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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238203 (31 seq.)
>C171085180
CP018839
Betaproteobacteria
Thauera chlorobenzoica 3CB1 [CP018839]
3272545
3272470
-
Thr
TGT
-
¡û
>W131050708
AMXA01000006
Betaproteobacteria
Thauera sp. 28 [AMXA]
134044
133969
-
Thr
TGT
[ENA]
¡û
>W131050759
AMXB01000005
Betaproteobacteria
Thauera sp. 27 [AMXB]
134854
134779
-
Thr
TGT
[ENA]
¡û
>W131050798
AMXC01000002
Betaproteobacteria
Thauera sp. 63 [AMXC]
19401
19476
+
Thr
TGT
[ENA]
¡û
>W131050849
AMXD01000002
Betaproteobacteria
Thauera aminoaromatica S2 [AMXD]
75003
74928
-
Thr
TGT
[ENA]
¡û
>W131050908
AMXE01000006
Betaproteobacteria
Thauera linaloolentis 47Lol = DSM 12138 [AMXE]
18639
18714
+
Thr
TGT
[ENA]
¡û
>W131050982
AMXF01000084
Betaproteobacteria
Thauera phenylacetica B4P [AMXF]
12942
13017
+
Thr
TGT
[ENA]
¡û
>W141078517
ATJV01000048
Betaproteobacteria
Thauera terpenica 58Eu [ATJV]
313824
313749
-
Thr
TGT
[ENA]
¡û
>W08007975
ABKT01000001
Betaproteobacteria
Thauera sp. MZ1T [ABKT] MZ1T [ABKT]
211273
211201
-
Thr
TGT
[ENA]
¡û
>WENV170650028
JRYD01005308
[JRYD] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 2 ppm DO
2212
2137
-
Thr
TGT
[ENA]
¢þ
>WENV170652432
JRYH01003159
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
274
199
-
Thr
TGT
[ENA]
¢þ
>WENV170653108
JRYI01004138
[JRYI] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 1 ppm DO
77
2
-
Thr
TGT
[ENA]
¢þ
>WENV170654718
JRYL01008885
[JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different
3992
4067
+
Thr
TGT
[ENA]
¢þ
>WENV170709244
LNFM01000213
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
46913
46988
+
Thr
TGT
[ENA]
¢þ
>C181042991
CP020026
Betaproteobacteria
Rhodocyclaceae bacterium Thauera-like [CP020026]
1997984
1998059
+
Thr
TGT
-
¡û
>C181164174
CP028339
Betaproteobacteria
Thauera aromatica K172 [CP028339]
1926768
1926843
+
Thr
TGT
-
¡û
>C181165153
CP028425
Betaproteobacteria
Zoogloeaceae bacteirum Par-f-2 [CP028425]
1896615
1896690
+
Thr
TGT
-
¡û
>C181176825
CP029331
Betaproteobacteria
Thauera hydrothermalis GD-2 [CP029331]
1089072
1088997
-
Thr
TGT
-
¡û
>W141561693
JHYR01000002
Betaproteobacteria
Thauera linaloolentis 47Lol = DSM 12138 [JHYR]
36345
36420
+
Thr
TGT
[ENA]
¡û
>W1910128335
BHVT01000033
Betaproteobacteria
Sulfurirhabdus autotrophica BiS0 [BHVT]
779
704
-
Thr
TGT
[ENA]
¡û
>W1911114376
NOIH01000015
Betaproteobacteria
Thauera propionica KNDSS-Mac4 [NOIH]
191659
191584
-
Thr
TGT
[ENA]
¡û
>C10113202
CP001281
Betaproteobacteria
Thauera aminoaromatica MZ1T [CP001281]
3395996
3395921
-
Thr
TGT
[Ensembl]
¡û
>W1511398321
JTDM01000021
Betaproteobacteria
Thauera sp. SWB20 [JTDM]
874161
874086
-
Thr
TGT
[ENA]
¡û
>W1511686464
LFRJ01000015
Betaproteobacteria
Thauera humireducens SgZ-1 [LFRJ]
1978503
1978578
+
Thr
TGT
[ENA]
¡û
>W11185889
CACR01001357
Betaproteobacteria
Thauera selenatis AX [CACR]
18068
18143
+
Thr
TGT
[ENA]
¡û
>C161075087
CP014646
Betaproteobacteria
Thauera humireducens SgZ-1 [CP014646]
351852
351927
+
Thr
TGT
[Ensembl]
¡û
>W1610042898
BAZL01000048
Betaproteobacteria
Thauera sp. DNT-1 [BAZL]
3695
3620
-
Thr
TGT
[ENA]
¡û
>W1610071679
BCUG01000003
Betaproteobacteria
Thauera butanivorans NBRC 103042 [BCUG]
11013
10938
-
Thr
TGT
[ENA]
¡û
>W1710040058
BAZL01000048
Betaproteobacteria
Thauera sp. DNT-1 [BAZL]
3695
3620
-
Thr
TGT
[ENA]
¡û
>W1710068881
BCUG01000003
Betaproteobacteria
Thauera butanivorans NBRC 103042 [BCUG]
11013
10938
-
Thr
TGT
[ENA]
¡û
>W1710539479
FNVJ01000036
Betaproteobacteria
Thauera chlorobenzoica [FNVJ]
22095
22170
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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