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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238259 (16 seq.)
>A171000986
CP001742
Thermoproteota
Acidilobus saccharovorans 345-15 [CP001742]
952531
952604
+
Met
CAT
-
¡û
>A171002424
CP002838
Thermoproteota
Pyrolobus fumarii 1A [CP002838]
1360352
1360428
+
Met
CAT
-
¡û
>A171002433
CP002838
Thermoproteota
Pyrolobus fumarii 1A [CP002838]
786634
786558
-
Met
CAT
-
¡û
>A171003910
CP006867
Thermoproteota
Ignicoccus islandicus DSM 13165 [CP006867]
160400
160476
+
Met
CAT
-
¡û
>A171006431
CP013011
Thermoproteota
Pyrodictium delaneyi Su06 [CP013011]
1172034
1172110
+
Met
CAT
-
¡û
>WENV181228576
OFEH01000281
[OFEH] hypersaline lake metagenome; Grendel Spring, Yellowstone National Park, Wyoming, USA
1032
1108
+
fMet
CAT
[ENA]
¢þ
>WENV181228627
OFEH01000519
[OFEH] hypersaline lake metagenome; Grendel Spring, Yellowstone National Park, Wyoming, USA
9161
9235
+
fMet
CAT
[ENA]
¢þ
>At0108
CP000493
Thermoproteota
Hyperthermus butylicus DSM 5456 [CP000493]
1134522
1134598
+
Met
CAT
[Ensembl]
¡û
>At2235
CP000816
Thermoproteota
Ignicoccus hospitalis KIN4/I [CP000816]
527572
527496
-
Met
CAT
[Ensembl]
¡û
>W1910015293
BDMD01000011
Thermoproteota
Aeropyrum pernix YK1-12-2013 [BDMD]
12411
12335
-
Met
CAT
[ENA]
¡û
>W1910869994
NCQP01000001
Thermoproteota
Pyrodictium delaneyi Hulk [NCQP]
493146
493070
-
Met
CAT
[ENA]
¡û
>W1911654384
QEFF01000036
Thermoproteota
Acidilobus sp. SCGC AC-742_E15 [QEFF]
2758
2832
+
Met
CAT
[ENA]
¡û
>ENV09004104
ADKH01001520
Hot springs metagenome ctg_1106445186506
4402
4326
-
Met
CAT
[ENA]
¡û
>W1610004202
AGIW01000001
Thermoproteota
Desulfurococcus amylolyticus DSM 16532 [AGIW]
250249
250323
+
Met
CAT
[ENA]
¡û
>W1610040465
AZUU01000002
Thermoproteota
Desulfurococcus amylolyticus Z-533 [AZUU]
459852
459926
+
Met
CAT
[ENA]
¡û
>W1610772511
LNTB01000001
Thermoproteota
Pyrodictium occultum PL-19 [LNTB]
1055596
1055520
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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