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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238272 (25 seq.)
>A171002052
CP002551
Euryarchaeota
Methanobacterium lacus AL-21 [CP002551]
299568
299496
-
His
GTG
-
¡û
>A171002250
CP002772
Euryarchaeota
Methanobacterium paludis SWAN1 [CP002772]
2210002
2210074
+
His
GTG
-
¡û
>A171004020
CP006933
Euryarchaeota
Methanobacterium formicicum BRM9 [CP006933]
339071
338996
-
His
GTG
-
¡û
>A171007316
HG425166
Euryarchaeota
Methanobacterium sp. MB1 [HG425166]
1716387
1716462
+
His
GTG
-
¡û
>A171007346
LN515531
Euryarchaeota
Methanobacterium formicicum [LN515531]
965157
965232
+
His
GTG
-
¡û
>A171007398
LN734822
Euryarchaeota
Methanobacterium formicicum [LN734822]
2096925
2097000
+
His
GTG
-
¡û
>A171007666
LT607756
Euryarchaeota
Methanobacterium congolense [LT607756]
2131519
2131591
+
His
GTG
-
¡û
>WENV180037386
FVAA010986548
[FVAA] soil metagenome; Soil
54
126
+
His
GTG
[ENA]
¢þ
>WENV181312372
OFJB01098575
[OFJB] sludge metagenome; sludge
322
394
+
His
GTG
[ENA]
¢þ
>WENV170021464
BBPF01012944
[BBPF] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
1723
1648
-
His
GTG
[ENA]
¢þ
>WENV170651530
JRYF01051929
[JRYF] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
1081
1009
-
His
GTG
[ENA]
¢þ
>WENV170661649
JXWV01080814
[JXWV] soil metagenome; rice field; organic FYM Plot
7
82
+
His
GTG
[ENA]
¢þ
>WENV170677322
LDZT01004936
[LDZT] terrestrial metagenome; oil reservoir sample SB1
4789
4864
+
His
GTG
[ENA]
¢þ
>WENV170976350
MTKZ01006900
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
2588
2663
+
His
GTG
[ENA]
¢þ
>W1910575098
JQLY01000001
Euryarchaeota
Methanobacterium sp. SMA-27 [JQLY]
2145559
2145631
+
His
GTG
[ENA]
¡û
>W1910583617
JXMW01000001
Euryarchaeota
Methanobrevibacter arboriphilus JCM 13429 = DSM 1125 DH1 [JXMW]
202216
202141
-
His
GTG
[ENA]
¡û
>W1910938900
NIZT01000038
Euryarchaeota
Candidatus Methanobinarius endosymbioticus NOE [NIZT]
31971
31896
-
His
GTG
[ENA]
¡û
>W1610006216
AMGN01000001
Euryarchaeota
Methanobacterium sp. Maddingley MBC34 [AMGN]
13459
13384
-
His
GTG
[ENA]
¡û
>W1610011024
AMPO01000008
Euryarchaeota
Methanobacterium formicicum DSM 3637 [AMPO]
49880
49805
-
His
GTG
[ENA]
¡û
>W1610049154
BBES01000007
Euryarchaeota
Methanobacterium formicicum JCM 10132 [BBES]
96235
96310
+
His
GTG
[ENA]
¡û
>W1610049183
BBET01000007
Euryarchaeota
Methanobrevibacter arboriphilus JCM 13429 = DSM 1125 [BBET]
7801
7726
-
His
GTG
[ENA]
¡û
>W1610083215
CBVX010000001
Euryarchaeota
Methanobrevibacter arboriphilus ANOR1 [CBVX]
496145
496070
-
His
GTG
[ENA]
¡û
>W1610613876
LGGL01000043
Euryarchaeota
Methanobacterium sp. 42_16 [LGGL]
4789
4864
+
His
GTG
[ENA]
¡û
>W1610990689
LWMT01000284
Euryarchaeota
Methanobrevibacter filiformis DSM 11501 [LWMT]
4753
4678
-
His
GTG
[ENA]
¡û
>W1610990765
LWMW01000087
Euryarchaeota
Methanobrevibacter cuticularis DSM 11139 [LWMW]
23510
23585
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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