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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.23830 (35 seq.)
>W1710934470
LOJI01000035
Betaproteobacteria
Polynucleobacter yangtzensis [LOJI]
374923
374834
-
Ser
CGA
[ENA]
¡û
>W1710934515
LOJJ01000005
Betaproteobacteria
Polynucleobacter sinensis [LOJJ]
129062
129151
+
Ser
CGA
[ENA]
¡û
>W1711147344
LVJO01000001
Betaproteobacteria
Polynucleobacter asymbioticus [LVJO]
693706
693795
+
Ser
CGA
[ENA]
¡û
>W1711149053
LVLD01000007
Betaproteobacteria
Polynucleobacter asymbioticus P1-KOL8 [LVLD]
352821
352910
+
Ser
CGA
[ENA]
¡û
>W1711149089
LVLE01000005
Betaproteobacteria
Polynucleobacter asymbioticus [LVLE]
379539
379628
+
Ser
CGA
[ENA]
¡û
>W1711149126
LVLF01000005
Betaproteobacteria
Polynucleobacter asymbioticus [LVLF]
129707
129796
+
Ser
CGA
[ENA]
¡û
>W1711149163
LVLG01000001
Betaproteobacteria
Polynucleobacter asymbioticus [LVLG]
799959
800048
+
Ser
CGA
[ENA]
¡û
>W1711272443
LZFI01000009
Betaproteobacteria
Polynucleobacter sp. MWH-Adler-W8 [LZFI]
19264
19353
+
Ser
CGA
[ENA]
¡û
>W1711281991
LZMQ01000003
Betaproteobacteria
Polynucleobacter sp. QLW-P1DATA-2 [LZMQ]
1166646
1166735
+
Ser
CGA
[ENA]
¡û
>W1711282024
LZMR01000002
Betaproteobacteria
Polynucleobacter sp. MWH-Tro8-2-5-gr [LZMR]
634903
634992
+
Ser
CGA
[ENA]
¡û
>W131220808
ATZV01000049
Betaproteobacteria
beta proteobacterium SCGC AAA027-C02 [ATZV]
15131
15042
-
Ser
CGA
[ENA]
¡û
>W1711421587
MHZG01000002
Betaproteobacteria
Polynucleobacter sp. GWA2_45_21 [MHZG]
14817
14906
+
Ser
CGA
[ENA]
¡û
>W1711504650
MKUT01000274
Betaproteobacteria
Burkholderiales bacterium 68-20 [MKUT]
12239
12328
+
Ser
CGA
[ENA]
¡û
>W1711625778
MPIY01000003
Betaproteobacteria
Polynucleobacter sphagniphilus MWH-Weng1-1 [MPIY]
206515
206604
+
Ser
CGA
[ENA]
¡û
>W1711932808
NAIA01000003
Betaproteobacteria
Polynucleobacter hirudinilacicola MWH-EgelM1-30-B4 [NAIA]
1124681
1124592
-
Ser
CGA
[ENA]
¡û
>W1712077049
NGUP01000001
Betaproteobacteria
Polynucleobacter campilacus MWH-Feld-100 [NGUP]
378215
378126
-
Ser
CGA
[ENA]
¡û
>C171035108
CP015016
Betaproteobacteria
Polynucleobacter asymbioticus MWH-RechtKolB [CP015016]
836015
836104
+
Ser
CGA
-
¡û
>C171035147
CP015017
Betaproteobacteria
Polynucleobacter asymbioticus MWH-RechtKol4 [CP015017]
835544
835633
+
Ser
CGA
-
¡û
>C171035185
CP015018
Betaproteobacteria
Polynucleobacter asymbioticus Tro8F10W22 [CP015018]
784309
784398
+
Ser
CGA
-
¡û
>W131104539
APCR01000322
Betaproteobacteria
Comamonas sp. B-9 [APCR]
36549
36638
+
Ser
CGA
[ENA]
¡û
>C017377
CP000655
Betaproteobacteria
Polynucleobacter asymbioticus QLW-P1DMWA-1 [CP000655]
693706
693795
+
Ser
CGA
[Ensembl]
¡û
>WENV170598746
FUWD010047434
[FUWD] metagenome; unknown
97
186
+
Ser
CGA
[ENA]
¢þ
>WENV170599746
FUWD010090193
[FUWD] metagenome; unknown
156
67
-
Ser
CGA
[ENA]
¢þ
>WENV170624233
FUWD013178193
[FUWD] metagenome; unknown
820
731
-
Ser
CGA
[ENA]
¢þ
>WENV170632515
FUWD013383781
[FUWD] metagenome; unknown
820
731
-
Ser
CGA
[ENA]
¢þ
>C181187677
CP030086
Betaproteobacteria
Polynucleobacter paneuropaeus MWH-Creno-4B4 [CP030086]
500823
500912
+
Ser
CGA
-
¡û
>C181219012
LT606951
Betaproteobacteria
Polynucleobacter necessarius [LT606951]
700467
700556
+
Ser
CGA
-
¡û
>W09106273
AAUC01000002
Betaproteobacteria
Polynucleobacter asymbioticus QLW-P1DMWA-1 [AAUC]
280980
281069
+
Ser
CGA
[ENA]
¡û
>C141003786
CP004348
Betaproteobacteria
beta proteobacterium CB [CP004348]
524724
524813
+
Ser
CGA
[Ensembl]
¡û
>W1810580642
QETI01000014
Betaproteobacteria
Comamonas sp. JNW [QETI]
24831
24920
+
Ser
CGA
[ENA]
¡û
>W1810699190
QMCH01000003
Betaproteobacteria
Polynucleobacter paneuropaeus FUKU-NW-11 [QMCH]
138570
138659
+
Ser
CGA
[ENA]
¡û
>C161092388
CP015922
Betaproteobacteria
Polynucleobacter wuianus QLW-P1FAT50C-4 [CP015922]
1343564
1343475
-
Ser
CGA
[Ensembl]
¡û
>WENV057456
AACY023295302
Marine microbial communities from Global Ocean Sampling (GOS)
970
1061
+
Ser
CGA
[ENA]
>W1610792001
LOJI01000035
Betaproteobacteria
Polynucleobacter yangtzensis [LOJI]
374923
374834
-
Ser
CGA
[ENA]
¡û
>W1610792046
LOJJ01000005
Betaproteobacteria
Polynucleobacter sinensis [LOJJ]
129062
129151
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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