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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238305 (71 seq.)
>W1711437536
MIPO01000006
Gammaproteobacteria
Pantoea deleyi [MIPO]
35527
35451
-
Arg
TCT
[ENA]
¡û
>W1711455296
MIZY01000001
Gammaproteobacteria
Pantoea brenneri conspicua [MIZY]
212440
212516
+
Arg
TCT
[ENA]
¡û
>W1711513230
MLFO01000042
Gammaproteobacteria
Mixta calida [MLFO]
6620
6696
+
Arg
TCT
[ENA]
¡û
>W1711513448
MLFS01000022
Gammaproteobacteria
Pantoea wallisii [MLFS]
47636
47560
-
Arg
TCT
[ENA]
¡û
>W1711517173
MLJI01000001
Gammaproteobacteria
Pantoea cypripedii [MLJI]
1132569
1132645
+
Arg
TCT
[ENA]
¡û
>W1711666331
MRBS01000001
Gammaproteobacteria
Pantoea sp. 1.19 [MRBS]
184723
184799
+
Arg
TCT
[ENA]
¡û
>W1711678768
MRUL01000032
Gammaproteobacteria
Izhakiella australiensis D4N98 [MRUL]
20493
20569
+
Arg
TCT
[ENA]
¡û
>W1711797988
MWUE01000016
Gammaproteobacteria
Pantoea latae AS1 [MWUE]
162701
162777
+
Arg
TCT
[ENA]
¡û
>W1712096113
NHZE01000013
Gammaproteobacteria
Pantoea sp. VS1 [NHZE]
92275
92351
+
Arg
TCT
[ENA]
¡û
>C171130494
LT670851
Gammaproteobacteria
Candidatus Erwinia haradaeae ErCipseudotaxifoliae [LT670851]
120644
120568
-
Arg
TCT
-
¡û
>WENV180310422
OBJT01000793
[OBJT] soil metagenome; soil
3812
3888
+
Arg
TCT
[ENA]
¢þ
>W141111678
AVSS01000023
Gammaproteobacteria
Pantoea dispersa EGD-AAK13 [AVSS]
417245
417169
-
Arg
TCT
[ENA]
¡û
>W141261061
CCAQ010000003
Gammaproteobacteria
Pantoea septica FF5 [CCAQ]
268867
268943
+
Arg
TCT
[ENA]
¡û
>WENV182808391
OJWF01000631
[OJWF] human gut metagenome; human gut
852
928
+
Arg
TCT
[ENA]
¢þ
>WENV182824054
OKBZ01000831
[OKBZ] human gut metagenome; human gut
1534
1610
+
Arg
TCT
[ENA]
¢þ
>WENV182845561
OKJE01000066
[OKJE] human gut metagenome; human gut
20302
20226
-
Arg
TCT
[ENA]
¢þ
>WENV182845920
OKJH01002513
[OKJH] human gut metagenome; human gut
756
680
-
Arg
TCT
[ENA]
¢þ
>WENV182864373
OKQC01001096
[OKQC] human gut metagenome; human gut
1988
2064
+
Arg
TCT
[ENA]
¢þ
>WENV170000316
AEWW01010319
[AEWW] ant fungus garden metagenome; Atta cephalotes fungus garden
79
3
-
Arg
TCT
[ENA]
¢þ
>WENV170001775
AGFS01156642
[AGFS] ant fungus garden metagenome; Atta colombica fungus garden top
232
156
-
Arg
TCT
[ENA]
¢þ
>C181064744
CP022427
Gammaproteobacteria
Pantoea ananatis YJ76 [CP022427]
2826389
2826313
-
Arg
TCT
-
¡û
>C181132817
CP026377
Gammaproteobacteria
Mixta gaviniae DSM 22758 [CP026377]
1345734
1345810
+
Arg
TCT
-
¡û
>C191159170
CP038281
Gammaproteobacteria
Raoultella ornithinolytica WLK218 [CP038281]
3865273
3865349
+
Arg
TCT
-
¡û
>C191219755
LR217705
Gammaproteobacteria
Candidatus Erwinia haradaeae ErCisplendens/pseudotsugae [LR217705]
115930
115854
-
Arg
TCT
-
¡û
>C191219791
LR217713
Gammaproteobacteria
Candidatus Erwinia haradaeae ErCicurvipes [LR217713]
119460
119384
-
Arg
TCT
-
¡û
>C191219898
LR217725
Gammaproteobacteria
Candidatus Erwinia haradaeae ErCipseudotaxifoliae [LR217725]
120345
120269
-
Arg
TCT
-
¡û
>W141808438
JPQA01000007
Gammaproteobacteria
Pantoea sp. NGS-ED-1003 [JPQA]
35793
35717
-
Arg
TCT
[ENA]
¡û
>W1910147944
BIIR01000026
Gammaproteobacteria
Klebsiella pneumoniae TUM14064 [BIIR]
10837
10761
-
Arg
TCT
[ENA]
¡û
>W1910760330
MNCH01000020
Gammaproteobacteria
Erwinia sp. OLSSP12 [MNCH]
42125
42201
+
Arg
TCT
[ENA]
¡û
>W1910760806
MNKW01000012
Gammaproteobacteria
Erwinia sp. OLCASP19 [MNKW]
20962
20886
-
Arg
TCT
[ENA]
¡û
>W1910760882
MNKX01000014
Gammaproteobacteria
Erwinia sp. OLMTSP26 [MNKX]
42125
42201
+
Arg
TCT
[ENA]
¡û
>W1910760951
MNKY01000014
Gammaproteobacteria
Erwinia sp. OLMDSP33 [MNKY]
42125
42201
+
Arg
TCT
[ENA]
¡û
>W1910768739
MOMA01000019
Gammaproteobacteria
Erwinia sp. OLTSP20 [MOMA]
20962
20886
-
Arg
TCT
[ENA]
¡û
>W1911397704
NWFM02000004
Gammaproteobacteria
Pantoea sp. FDAARGOS_194 [NWFM]
1619915
1619991
+
Arg
TCT
[ENA]
¡û
>W1911411363
NWUO01000003
Gammaproteobacteria
Mixta theicola QC88-366 [NWUO]
87909
87833
-
Arg
TCT
[ENA]
¡û
>W1911492939
OBEF01000002
Gammaproteobacteria
Enterobacter sp. CC120223-11 [OBEF]
338510
338586
+
Arg
TCT
[ENA]
¡û
>W1810013588
BGLR01000008
Gammaproteobacteria
Klebsiella pneumoniae TUM1811 [BGLR]
47163
47239
+
Arg
TCT
[ENA]
¡û
>W1810053894
PDET01000001
Gammaproteobacteria
Pantoea coffeiphila 342 [PDET]
259245
259321
+
Arg
TCT
[ENA]
¡û
>W1810226461
POWM01000001
Gammaproteobacteria
Pantoea sp. ICBG 985 [POWM]
236230
236306
+
Arg
TCT
[ENA]
¡û
>W1810226582
POWN01000007
Gammaproteobacteria
Pantoea sp. ICBG 828 [POWN]
55661
55585
-
Arg
TCT
[ENA]
¡û
>W1810257580
PQJV01000004
Gammaproteobacteria
Pantoea alvi PSNIH6 [PQJV]
217260
217184
-
Arg
TCT
[ENA]
¡û
>W1810257687
PQJW01000052
Gammaproteobacteria
Pantoea sp. PSNIH3 [PQJW]
573
497
-
Arg
TCT
[ENA]
¡û
>W1810257874
PQJZ01000007
Gammaproteobacteria
Pantoea sp. PSNIH4 [PQJZ]
164520
164444
-
Arg
TCT
[ENA]
¡û
>W1810326350
PUFZ01000009
Gammaproteobacteria
Pantoea sp. ARC607 [PUFZ]
13963
14039
+
Arg
TCT
[ENA]
¡û
>W1810326410
PUGA01000002
Gammaproteobacteria
Pantoea sp. ARC270 [PUGA]
70536
70612
+
Arg
TCT
[ENA]
¡û
>W10106223
ACYJ01000003
Gammaproteobacteria
Pantoea sp. At-9b [ACYJ]
198169
198245
+
Arg
TCT
[ENA]
¡û
>WENV11100674
AEWW01010319
[AEWW] ant fungus garden metagenome; Atta cephalotes fungus garden
79
3
-
Arg
TCT
[ENA]
¡û
>WENV11101847
AGFS01156642
[AGFS] ant fungus garden metagenome; Atta colombica fungus garden top
232
156
-
Arg
TCT
[ENA]
¡û
>W11108546
ACYJ01000003
Gammaproteobacteria
Pantoea sp. At-9b [ACYJ]
198169
198245
+
Arg
TCT
[ENA]
¡û
>W1511402174
JTJJ01000033
Gammaproteobacteria
Pantoea rodasii ND03 [JTJJ]
132349
132273
-
Arg
TCT
[ENA]
¡û
>W1511441525
JUQR01000069
Gammaproteobacteria
Pantoea vagans 848_PVAG [JUQR]
6720
6796
+
Arg
TCT
[ENA]
¡û
>W1511547934
JZRH01000024
Gammaproteobacteria
Pantoea sp. BL1 [JZRH]
23989
23913
-
Arg
TCT
[ENA]
¡û
>C161035395
CP011427
Gammaproteobacteria
Pantoea vagans ND02 [CP011427]
2915208
2915132
-
Arg
TCT
[Ensembl]
¡û
>W1610053218
BBOC01000056
Gammaproteobacteria
Type-D symbiont of Plautia stali [BBOC]
16796
16720
-
Arg
TCT
[ENA]
¡û
>W1610053280
BBOD01000020
Gammaproteobacteria
Type-E symbiont of Plautia stali [BBOD]
93140
93064
-
Arg
TCT
[ENA]
¡û
>W1610053322
BBOE01000001
Gammaproteobacteria
Type-F symbiont of Plautia stali [BBOE]
111447
111371
-
Arg
TCT
[ENA]
¡û
>W1610591105
LDRY01000018
Gammaproteobacteria
Pantoea dispersa [LDRY]
72059
71983
-
Arg
TCT
[ENA]
¡û
>W1610591151
LDRZ01000006
Gammaproteobacteria
Pantoea dispersa [LDRZ]
332037
331961
-
Arg
TCT
[ENA]
¡û
>W1610591279
LDSB01000003
Gammaproteobacteria
Pantoea dispersa [LDSB]
67112
67036
-
Arg
TCT
[ENA]
¡û
>W1610591330
LDSC01000001
Gammaproteobacteria
Pantoea dispersa [LDSC]
235623
235699
+
Arg
TCT
[ENA]
¡û
>W1610591404
LDSD01000004
Gammaproteobacteria
Pantoea dispersa [LDSD]
184714
184790
+
Arg
TCT
[ENA]
¡û
>W1610591601
LDSG01000007
Gammaproteobacteria
Pantoea dispersa [LDSG]
184895
184971
+
Arg
TCT
[ENA]
¡û
>W1710049596
BBOC01000056
Gammaproteobacteria
Type-D symbiont of Plautia stali [BBOC]
16796
16720
-
Arg
TCT
[ENA]
¡û
>W1710049658
BBOD01000020
Gammaproteobacteria
Type-E symbiont of Plautia stali [BBOD]
93140
93064
-
Arg
TCT
[ENA]
¡û
>W1710049700
BBOE01000001
Gammaproteobacteria
Type-F symbiont of Plautia stali [BBOE]
111447
111371
-
Arg
TCT
[ENA]
¡û
>W1710710385
LDRY01000018
Gammaproteobacteria
Pantoea dispersa [LDRY]
72059
71983
-
Arg
TCT
[ENA]
¡û
>W1710710431
LDRZ01000006
Gammaproteobacteria
Pantoea dispersa [LDRZ]
332037
331961
-
Arg
TCT
[ENA]
¡û
>W1710710559
LDSB01000003
Gammaproteobacteria
Pantoea dispersa [LDSB]
67112
67036
-
Arg
TCT
[ENA]
¡û
>W1710710610
LDSC01000001
Gammaproteobacteria
Pantoea dispersa [LDSC]
235623
235699
+
Arg
TCT
[ENA]
¡û
>W1710710684
LDSD01000004
Gammaproteobacteria
Pantoea dispersa [LDSD]
184714
184790
+
Arg
TCT
[ENA]
¡û
>W1710710881
LDSG01000007
Gammaproteobacteria
Pantoea dispersa [LDSG]
184895
184971
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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