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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238321 (119 seq.)
>W1710866826
LMHU01000005
Actinomycetota
Terrabacter sp. Root181 [LMHU]
561076
561149
+
Arg
ACG
[ENA]
¡û
>W1710877341
LMQA01000001
Actinomycetota
Geodermatophilus sp. Leaf369 [LMQA]
1413186
1413113
-
Arg
ACG
[ENA]
¡û
>W1710877436
LMQC01000012
Actinomycetota
Modestobacter sp. Leaf380 [LMQC]
712790
712717
-
Arg
ACG
[ENA]
¡û
>W1710881139
LMSW01000001
Actinomycetota
Terrabacter sp. Soil810 [LMSW]
208756
208829
+
Arg
ACG
[ENA]
¡û
>W1710881200
LMSX01000007
Actinomycetota
Terrabacter sp. Soil811 [LMSX]
357739
357666
-
Arg
ACG
[ENA]
¡û
>W1711074685
LSJT01000085
Actinomycetota
Dermacoccus sp. CCH2-D9 [LSJT]
5079
5152
+
Arg
ACG
[ENA]
¡û
>W1711326364
MBFF02000745
Actinomycetota
Modestobacter sp. VKM Ac-2676 [MBFF]
1222
1149
-
Arg
ACG
[ENA]
¡û
>W1711499940
MKQR01000023
Actinomycetota
Actinokineospora bangkokensis [MKQR]
48779
48854
+
Arg
ACG
[ENA]
¡û
>W1711724897
MTQO01000051
Actinomycetota
Actinosynnema sp. ALI-1.44 [MTQO]
133200
133273
+
Arg
ACG
[ENA]
¡û
>W1711724913
MTQO01000053
Actinomycetota
Actinosynnema sp. ALI-1.44 [MTQO]
27759
27686
-
Arg
ACG
[ENA]
¡û
>W131170527
ARFO01000024
Actinomycetota
Actinomadura flavalba DSM 45200 [ARFO]
1579758
1579831
+
Arg
ACG
[ENA]
¡û
>W131179863
ARMS01000039
Actinomycetota
Actinomadura atramentaria DSM 43919 [ARMS]
185796
185869
+
Arg
ACG
[ENA]
¡û
>W131185539
ARTT01000012
Actinomycetota
Terracoccus sp. 273MFTsu3.1 [ARTT]
494694
494767
+
Arg
ACG
[ENA]
¡û
>W131227592
AUFG01000057
Actinomycetota
Arsenicicoccus bolidensis DSM 15745 [AUFG]
13335
13262
-
Arg
ACG
[ENA]
¡û
>W131161620
AQXW01000004
Actinomycetota
Demetria terragena DSM 11295 [AQXW]
2313106
2313033
-
Arg
ACG
[ENA]
¡û
>WENV180690321
OCZS010002809
[OCZS] soil metagenome; soil
1105
1032
-
Arg
ACG
[ENA]
¢þ
>W141140044
AWOO02000013
Actinomycetota
Actinomadura madurae LIID-AJ290 [AWOO]
24176
24101
-
Arg
ACG
[ENA]
¡û
>W141142478
AWQS01000045
Actinomycetota
Intrasporangium chromatireducens Q5-1 [AWQS]
20116
20189
+
Arg
ACG
[ENA]
¡û
>W141199764
AYXG01000089
Actinomycetota
Actinokineospora spheciospongiae EG49 [AYXG]
29700
29775
+
Arg
ACG
[ENA]
¡û
>W141259303
CBYP010000032
Actinomycetota
Candidatus Blastococcus massiliensis AP3 [CBYP]
1156
1083
-
Arg
ACG
[ENA]
¡û
>W141275766
JADG01000008
Actinomycetota
Actinomadura oligospora ATCC 43269 [JADG]
162840
162913
+
Arg
ACG
[ENA]
¡û
>C181196278
CP031145
Actinomycetota
Intrasporangium calvum C5 [CP031145]
124920
124993
+
Arg
ACG
-
¡û
>C191089019
CP032402
Actinomycetota
Thermomonospora amylolytica YIM 77502 [CP032402]
256865
256938
+
Arg
ACG
-
¡û
>W141557980
JHVO01000007
Actinomycetota
Geodermatophilaceae bacterium URHB0062 [JHVO]
57470
57397
-
Arg
ACG
[ENA]
¡û
>W141558036
JHVP01000008
Actinomycetota
Geodermatophilaceae bacterium URHA0031 [JHVP]
164628
164555
-
Arg
ACG
[ENA]
¡û
>W141564774
JIBA01000005
Actinomycetota
Intrasporangiaceae bacterium URHB0013 [JIBA]
29677
29750
+
Arg
ACG
[ENA]
¡û
>W141730409
JNII01000006
Actinomycetota
Geodermatophilaceae bacterium URHB0048 [JNII]
63153
63226
+
Arg
ACG
[ENA]
¡û
>W141730515
JNIK01000011
Actinomycetota
Blastococcus sp. URHD0036 [JNIK]
497209
497136
-
Arg
ACG
[ENA]
¡û
>W141758259
JNYM01000707
Actinomycetota
Kibdelosporangium aridum subsp. largum [JNYM]
6164
6237
+
Arg
ACG
[ENA]
¡û
>W141760432
JOAA01000018
Actinomycetota
Rhodococcus rhodnii [JOAA]
303826
303751
-
Arg
ACG
[ENA]
¡û
>W141768714
JOFJ01000030
Actinomycetota
Spirillospora albida [JOFJ]
885
810
-
Arg
ACG
[ENA]
¡û
>W09109020
ABTU01000002
Actinomycetota
Geodermatophilus obscurus DSM 43160 [ABTU]
20250
20177
-
Arg
ACG
[ENA]
¡û
>W1910547180
FZNO01000024
Actinomycetota
Blastococcus mobilis DSM 44272 [FZNO]
2523
2450
-
Arg
ACG
[ENA]
¡û
>W1910547241
FZNP01000023
Actinomycetota
Actinomadura mexicana DSM 44485 [FZNP]
91570
91495
-
Arg
ACG
[ENA]
¡û
>W1910548139
FZOH01000010
Actinomycetota
Geodermatophilus saharensis DSM 45423 [FZOH]
203405
203478
+
Arg
ACG
[ENA]
¡û
>W1910548509
FZOO01000006
Actinomycetota
Geodermatophilus pulveris DSM 46839 [FZOO]
3759
3832
+
Arg
ACG
[ENA]
¡û
>W1910548688
FZOR01000045
Actinomycetota
Actinomadura meyerae DSM 44715 [FZOR]
64243
64317
+
Arg
ACG
[ENA]
¡û
>W1910646727
LWUA01000087
Actinomycetota
Blastococcus sp. CCUG 61487 [LWUA]
1999
1926
-
Arg
ACG
[ENA]
¡û
>W1910803623
MTBP01000001
Actinomycetota
Actinomadura rubteroloni 5·î2Æü [MTBP]
494478
494552
+
Arg
ACG
[ENA]
¡û
>W1911385168
NVPT01000155
Actinomycetota
Geodermatophilus chilensis B12 [NVPT]
4682
4609
-
Arg
ACG
[ENA]
¡û
>W1911492090
OBDO01000005
Actinomycetota
Geodermatophilus sabuli DSM 46844 [OBDO]
22783
22856
+
Arg
ACG
[ENA]
¡û
>W1911495729
OBQI01000001
Actinomycetota
Blastococcus aggregatus DSM 4725 [OBQI]
918506
918433
-
Arg
ACG
[ENA]
¡û
>W1911497442
OCNK01000003
Actinomycetota
Blastococcus haudaquaticus DSM 44270 [OCNK]
264875
264948
+
Arg
ACG
[ENA]
¡û
>W1911679538
QHKI01000093
Actinomycetota
Kibdelosporangium aridum A82846 [QHKI]
15490
15565
+
Arg
ACG
[ENA]
¡û
>W1810222142
POQT01000003
Actinomycetota
Blastococcus saxobsidens DSM 44509 [POQT]
167741
167814
+
Arg
ACG
[ENA]
¡û
>W1810222187
POQU01000007
Actinomycetota
Blastococcus atacamensis P6 [POQU]
3996
3923
-
Arg
ACG
[ENA]
¡û
>W1810364470
PVTG01000010
Actinomycetota
Geodermatophilus tzadiensis DSM 45416 [PVTG]
74661
74734
+
Arg
ACG
[ENA]
¡û
>W1810533117
QCZF01000001
Actinomycetota
Blastococcus litoris GP-S2-8 [QCZF]
233420
233493
+
Arg
ACG
[ENA]
¡û
>W1810609404
QGTX01000001
Actinomycetota
Geodermatophilus normandii DSM 45417 [QGTX]
898022
897949
-
Arg
ACG
[ENA]
¡û
>W1810623464
QHCP01000006
Actinomycetota
Actinokineospora spheciospongiae CECT 8578 [QHCP]
410315
410390
+
Arg
ACG
[ENA]
¡û
>W1810676856
QKMH01000012
Actinomycetota
Geodermatophilus sp. DSM 44511 [QKMH]
24014
24087
+
Arg
ACG
[ENA]
¡û
>W1810678999
QKNV01000017
Actinomycetota
Modestobacter versicolor CP153-2 [QKNV]
4912
4839
-
Arg
ACG
[ENA]
¡û
>W1810733375
QOHF01000012
Actinomycetota
Geodermatophilus sp. TF02-6 [QOHF]
23989
24062
+
Arg
ACG
[ENA]
¡û
>W1810733422
QOHG01000005
Actinomycetota
Blastococcus sp. TF02A-26 [QOHG]
68440
68367
-
Arg
ACG
[ENA]
¡û
>W1810733497
QOHH01000015
Actinomycetota
Blastococcus sp. TF02-9 [QOHH]
72296
72369
+
Arg
ACG
[ENA]
¡û
>W1810733504
QOHI01000001
Actinomycetota
Blastococcus sp. TBT05-19 [QOHI]
197820
197893
+
Arg
ACG
[ENA]
¡û
>W1810733590
QOHJ01000008
Actinomycetota
Blastococcus sp. TF02A-30 [QOHJ]
103446
103519
+
Arg
ACG
[ENA]
¡û
>W1810733620
QOHK01000004
Actinomycetota
Blastococcus sp. TF02-8 [QOHK]
199531
199458
-
Arg
ACG
[ENA]
¡û
>W1810861681
QTUA01000001
Actinomycetota
Calidifontibacter indicus DSM 22967 [QTUA]
874891
874818
-
Arg
ACG
[ENA]
¡û
>W1810888886
QURH01000211
Actinomycetota
Actinomadura logoneensis NEAU-G17 [QURH]
20484
20411
-
Arg
ACG
[ENA]
¡û
>W1810913798
QVNQ01000001
Actinomycetota
Actinomadura spongiicola LHW52907 [QVNQ]
106125
106199
+
Arg
ACG
[ENA]
¡û
>C151039219
CP008889
Actinomycetota
Dermacoccus nishinomiyaensis M25 [CP008889]
563276
563203
-
Arg
ACG
[Ensembl]
¡û
>C151077129
CP011112
Actinomycetota
Luteipulveratus mongoliensis MN07-A0370 [CP011112]
5130676
5130749
+
Arg
ACG
-
¡û
>C151090479
CP012070
Actinomycetota
Arsenicicoccus sp. oral taxon 190 F0371 [CP012070]
645707
645634
-
Arg
ACG
-
¡û
>W1510073600
CDME01000002
Actinomycetota
Kibdelosporangium sp. MJ126-NF4 [CDME]
1404146
1404073
-
Arg
ACG
[ENA]
¡û
>W1510073611
CDME01000006
Actinomycetota
Kibdelosporangium sp. MJ126-NF4 [CDME]
622764
622839
+
Arg
ACG
[ENA]
¡û
>C10107390
CP001867
Actinomycetota
Geodermatophilus obscurus DSM 43160 [CP001867]
497876
497949
+
Arg
ACG
[Ensembl]
¡û
>C10112492
CP001958
Actinomycetota
Segniliparus rotundus DSM 44985 [CP001958]
714809
714734
-
Arg
ACG
[Ensembl]
¡û
>W1510456351
CPWZ01000101
Actinomycetota
Mycobacterium tuberculosis 401416 [CPWZ]
2390
2463
+
Arg
ACG
[ENA]
¡û
>W11109728
ACZI01000027
Actinomycetota
Segniliparus rugosus ATCC BAA-974 [ACZI]
42774
42701
-
Arg
ACG
[ENA]
¡û
>C11111414
CP002343
Actinomycetota
Intrasporangium calvum DSM 43043 [CP002343]
337709
337782
+
Arg
ACG
[Ensembl]
¡û
>C11114898
AP012204
Actinomycetota
Microlunatus phosphovorus NM-1 [AP012204]
5436434
5436359
-
Arg
ACG
[Ensembl]
¡û
>W1511534734
JYOE01000013
Actinomycetota
Terrabacter sp. 28 [JYOE]
206190
206117
-
Arg
ACG
[ENA]
¡û
>W1511629585
LDCM01000001
Actinomycetota
Dermacoccus sp. PE3 [LDCM]
470657
470730
+
Arg
ACG
[ENA]
¡û
>W11155919
AFAQ01000586
Actinomycetota
Rhodococcus sp. R04 [AFAQ]
1671
1598
-
Arg
ACG
[ENA]
¡û
>C121016090
FO117623
Actinomycetota
Blastococcus saxobsidens DD2 [FO117623]
416487
416560
+
Arg
ACG
[Ensembl]
¡û
>C121016188
FO203431
Actinomycetota
Modestobacter marinus BC501 [FO203431]
516658
516731
+
Arg
ACG
[Ensembl]
¡û
>C161045485
CP012752
Actinomycetota
Kibdelosporangium phytohabitans KLBMP1111 [CP012752]
239025
239098
+
Arg
ACG
[Ensembl]
¡û
>C161045510
CP012752
Actinomycetota
Kibdelosporangium phytohabitans KLBMP1111 [CP012752]
5194814
5194887
+
Arg
ACG
[Ensembl]
¡û
>W1610062595
BCNQ01000133
Actinomycetota
Piscicoccus intestinalis NBRC 104926 [BCNQ]
2436
2509
+
Arg
ACG
[ENA]
¡û
>W1610067491
BCQP01000089
Actinomycetota
Actinomadura chibensis NBRC 106107 [BCQP]
2732
2807
+
Arg
ACG
[ENA]
¡û
>W1610067676
BCQS01000044
Actinomycetota
Actinomadura latina NBRC 106108 [BCQS]
35831
35758
-
Arg
ACG
[ENA]
¡û
>W1610067688
BCQT01000002
Actinomycetota
Actinomadura macra NBRC 14102 [BCQT]
406019
406092
+
Arg
ACG
[ENA]
¡û
>W1610068755
BCRO01000063
Actinomycetota
Actinomadura hibisca NBRC 15177 [BCRO]
3018
2945
-
Arg
ACG
[ENA]
¡û
>W1610729172
LMHU01000005
Actinomycetota
Terrabacter sp. Root181 [LMHU]
561076
561149
+
Arg
ACG
[ENA]
¡û
>W1610739687
LMQA01000001
Actinomycetota
Geodermatophilus sp. Leaf369 [LMQA]
1413186
1413113
-
Arg
ACG
[ENA]
¡û
>W1610739782
LMQC01000012
Actinomycetota
Modestobacter sp. Leaf380 [LMQC]
712790
712717
-
Arg
ACG
[ENA]
¡û
>W1610743485
LMSW01000001
Actinomycetota
Terrabacter sp. Soil810 [LMSW]
208756
208829
+
Arg
ACG
[ENA]
¡û
>W1610743546
LMSX01000007
Actinomycetota
Terrabacter sp. Soil811 [LMSX]
357739
357666
-
Arg
ACG
[ENA]
¡û
>W1610913990
LSJT01000085
Actinomycetota
Dermacoccus sp. CCH2-D9 [LSJT]
5079
5152
+
Arg
ACG
[ENA]
¡û
>W1611063212
MBFF01000804
Actinomycetota
Modestobacter sp. VKM Ac-2676 [MBFF]
335
408
+
Arg
ACG
[ENA]
¡û
>W1710064864
BCQP01000089
Actinomycetota
Actinomadura chibensis NBRC 106107 [BCQP]
2732
2807
+
Arg
ACG
[ENA]
¡û
>W1710065049
BCQS01000044
Actinomycetota
Actinomadura latina NBRC 106108 [BCQS]
35831
35758
-
Arg
ACG
[ENA]
¡û
>W1710065061
BCQT01000002
Actinomycetota
Actinomadura macra NBRC 14102 [BCQT]
406019
406092
+
Arg
ACG
[ENA]
¡û
>W1710066128
BCRO01000063
Actinomycetota
Actinomadura hibisca NBRC 15177 [BCRO]
3018
2945
-
Arg
ACG
[ENA]
¡û
>W1710506060
FMUH01000001
Actinomycetota
Klenkia marina DSM 45722 [FMUH]
755025
754952
-
Arg
ACG
[ENA]
¡û
>W1710512193
FMZF01000002
Actinomycetota
Geodermatophilus telluris [FMZF]
232231
232304
+
Arg
ACG
[ENA]
¡û
>W1710514342
FNAW01000004
Actinomycetota
Blastococcus fimeti DSM 44205 [FNAW]
450263
450190
-
Arg
ACG
[ENA]
¡û
>W1710515375
FNBT01000005
Actinomycetota
Blastococcus aurantiacus DSM 44268 [FNBT]
210684
210611
-
Arg
ACG
[ENA]
¡û
>W1710515942
FNCF01000001
Actinomycetota
Klenkia brasiliensis [FNCF]
574195
574122
-
Arg
ACG
[ENA]
¡û
>W1710522436
FNHE01000006
Actinomycetota
Geodermatophilus siccatus [FNHE]
290653
290580
-
Arg
ACG
[ENA]
¡û
>W1710524305
FNIQ01000001
Actinomycetota
Geodermatophilus sp. DSM 45219 [FNIQ]
754800
754727
-
Arg
ACG
[ENA]
¡û
>W1710524381
FNIR01000008
Actinomycetota
Klenkia soli [FNIR]
18497
18570
+
Arg
ACG
[ENA]
¡û
>W1710530451
FNOT01000004
Actinomycetota
Geodermatophilus africanus [FNOT]
490194
490121
-
Arg
ACG
[ENA]
¡û
>W1710530760
FNOZ01000101
Actinomycetota
Modestobacter sp. DSM 44400 [FNOZ]
4913
4986
+
Arg
ACG
[ENA]
¡û
>W1710544054
FOAO01000002
Actinomycetota
Blastococcus sp. DSM 46786 [FOAO]
42930
43003
+
Arg
ACG
[ENA]
¡û
>W1710548994
FOEE01000015
Actinomycetota
Trujillella endophytica endophyticus [FOEE]
59090
59163
+
Arg
ACG
[ENA]
¡û
>W1710551772
FOGI01000016
Actinomycetota
Actinokineospora terrae [FOGI]
83009
83082
+
Arg
ACG
[ENA]
¡û
>W1710554081
FOIE01000005
Actinomycetota
Geodermatophilus poikilotrophus [FOIE]
400779
400706
-
Arg
ACG
[ENA]
¡û
>W1710558760
FOMD01000002
Actinomycetota
Klenkia taihuensis [FOMD]
592893
592820
-
Arg
ACG
[ENA]
¡û
>W1710560118
FOND01000002
Actinomycetota
Blastococcus sp. DSM 46838 [FOND]
26030
26103
+
Arg
ACG
[ENA]
¡û
>W1710567590
FOSW01000004
Actinomycetota
Geodermatophilus ruber [FOSW]
344999
344926
-
Arg
ACG
[ENA]
¡û
>W1710570670
FOVH01000011
Actinomycetota
Actinomadura madurae [FOVH]
130999
130924
-
Arg
ACG
[ENA]
¡û
>W1710571756
FOWE01000003
Actinomycetota
Geodermatophilus obscurus [FOWE]
222662
222735
+
Arg
ACG
[ENA]
¡û
>W1710572370
FOWQ01000003
Actinomycetota
Geodermatophilus dictyosporus DSM 44208 [FOWQ]
218986
219059
+
Arg
ACG
[ENA]
¡û
>W1710577713
FPBA01000001
Actinomycetota
Geodermatophilus amargosae [FPBA]
260408
260481
+
Arg
ACG
[ENA]
¡û
>W1710584862
FQVX01000001
Actinomycetota
Geodermatophilus nigrescens [FQVX]
237055
237128
+
Arg
ACG
[ENA]
¡û
>W1710593500
FRDM01000055
Actinomycetota
Geodermatophilus obscurus [FRDM]
3902
3975
+
Arg
ACG
[ENA]
¡û
>W1710606450
FWXV01000002
Actinomycetota
Kibdelosporangium aridum [FWXV]
1607155
1607230
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
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Representative sequence of each cluster
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