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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238330 (131 seq.)
>W1710899499
LNIZ01000011
Actinomycetota
Trueperella bernardiae [LNIZ]
1164
1091
-
Glu
CTC
[ENA]
¡û
>W1710899500
LNIZ01000011
Actinomycetota
Trueperella bernardiae [LNIZ]
743
670
-
Glu
CTC
[ENA]
¡û
>W1711043881
LRMP01000003
Actinomycetota
Brachybacterium sp. sponge [LRMP]
335554
335629
+
Glu
CTC
[ENA]
¡û
>W1711184946
LWMY01000036
Actinomycetota
Trueperella sp. HMSC08H06 [LWMY]
29284
29357
+
Glu
CTC
[ENA]
¡û
>W1711184947
LWMY01000036
Actinomycetota
Trueperella sp. HMSC08H06 [LWMY]
29704
29777
+
Glu
CTC
[ENA]
¡û
>W1711185095
LWNB01000060
Actinomycetota
Trueperella sp. HMSC08B05 [LWNB]
448
375
-
Glu
CTC
[ENA]
¡û
>W1711185741
LWNQ01000016
Actinomycetota
Dermabacter sp. HMSC08H10 [LWNQ]
16471
16544
+
Glu
CTC
[ENA]
¡û
>W1711186356
LWOD01000031
Actinomycetota
Dermabacter sp. HMSC06F07 [LWOD]
399143
399070
-
Glu
CTC
[ENA]
¡û
>W1711772068
MVGS01000021
Actinomycetota
Trueperella pyogenes [MVGS]
3924
3851
-
Glu
CTC
[ENA]
¡û
>W1711772069
MVGS01000021
Actinomycetota
Trueperella pyogenes [MVGS]
3399
3326
-
Glu
CTC
[ENA]
¡û
>W131001166
AGWL01000008
Actinomycetota
Actinobaculum massiliense ACS-171-V-Col2 [AGWL]
37641
37716
+
Glu
CTC
[ENA]
¡û
>W131001167
AGWL01000008
Actinomycetota
Actinobaculum massiliense ACS-171-V-Col2 [AGWL]
37807
37882
+
Glu
CTC
[ENA]
¡û
>W131001203
AGWM01000011
Actinomycetota
Actinotignum schaalii FB123-CNA-2 [AGWM]
274627
274554
-
Glu
CTC
[ENA]
¡û
>W131206300
ATFO01000008
Actinomycetota
Dermabacter sp. HFH0086 [ATFO]
422452
422379
-
Glu
CTC
[ENA]
¡û
>W131222595
AUBK01000002
Actinomycetota
Actinotignum schaalii DSM 15541 [AUBK]
151648
151575
-
Glu
CTC
[ENA]
¡û
>WENV180312591
OBJZ01000011
[OBJZ] human gut metagenome; fecal sample
123735
123808
+
Glu
CTC
[ENA]
¢þ
>WENV180554436
OCJN01000923
[OCJN] human skin metagenome; Infant 1 DOL 23 skin
850
777
-
Glu
CTC
[ENA]
¢þ
>WENV182636490
OJKZ01009544
[OJKZ] metagenome; surface
1144
1217
+
Glu
CTC
[ENA]
¢þ
>WENV182812795
OJXV01000020
[OJXV] human gut metagenome; human gut
60391
60464
+
Glu
CTC
[ENA]
¢þ
>WENV182825521
OKCK01000216
[OKCK] human gut metagenome; human gut
12593
12520
-
Glu
CTC
[ENA]
¢þ
>WENV182831684
OKEG01000138
[OKEG] human gut metagenome; human gut
15287
15214
-
Glu
CTC
[ENA]
¢þ
>WENV182845689
OKJE01001979
[OKJE] human gut metagenome; human gut
1024
1097
+
Glu
CTC
[ENA]
¢þ
>WENV182849754
OKKT01004301
[OKKT] human gut metagenome; human gut
406
333
-
Glu
CTC
[ENA]
¢þ
>WENV182855176
OKMY01000225
[OKMY] human gut metagenome; human gut
23876
23949
+
Glu
CTC
[ENA]
¢þ
>W141284164
JALQ01000002
Actinomycetota
Trueperella pyogenes MS249 [JALQ]
21172
21245
+
Glu
CTC
[ENA]
¡û
>W141284200
JALQ01000083
Actinomycetota
Trueperella pyogenes MS249 [JALQ]
16707
16634
-
Glu
CTC
[ENA]
¡û
>WENV182962592
OKWN01008240
[OKWN] human gut metagenome; stool
355
428
+
Glu
CTC
[ENA]
¢þ
>WENV183087959
OLJQ01000626
[OLJQ] human gut metagenome; human gut
241
168
-
Glu
CTC
[ENA]
¢þ
>W141400444
JDRS01000009
Actinomycetota
Dermabacter hominis 1368 [JDRS]
89413
89486
+
Glu
CTC
[ENA]
¡û
>W141406650
JDYK01000002
Actinomycetota
Brachybacterium phenoliresistens [JDYK]
10999
11074
+
Glu
CTC
[ENA]
¡û
>C181084619
CP023563
Actinomycetota
Brachybacterium vulturis VM2412 [CP023563]
2144940
2145013
+
Glu
CTC
-
¡û
>C181084620
CP023563
Actinomycetota
Brachybacterium vulturis VM2412 [CP023563]
2145041
2145114
+
Glu
CTC
-
¡û
>C181084668
CP023564
Actinomycetota
Brachybacterium ginsengisoli DCY80 [CP023564]
1660356
1660429
+
Glu
CTC
-
¡û
>C181168829
CP028833
Actinomycetota
Trueperella pyogenes Arash114 [CP028833]
766815
766742
-
Glu
CTC
-
¡û
>C181168830
CP028833
Actinomycetota
Trueperella pyogenes Arash114 [CP028833]
766281
766208
-
Glu
CTC
-
¡û
>C181171287
CP029001
Actinomycetota
Trueperella pyogenes TP4479 [CP029001]
1837777
1837850
+
Glu
CTC
-
¡û
>C181171288
CP029001
Actinomycetota
Trueperella pyogenes TP4479 [CP029001]
1838304
1838377
+
Glu
CTC
-
¡û
>C181171514
CP029004
Actinomycetota
Trueperella pyogenes TP-2849 [CP029004]
2258525
2258598
+
Glu
CTC
-
¡û
>C181171515
CP029004
Actinomycetota
Trueperella pyogenes TP-2849 [CP029004]
2259052
2259125
+
Glu
CTC
-
¡û
>C181199726
CP031356
Actinomycetota
Brachybacterium saurashtrense DSM 23186 [CP031356]
1477761
1477688
-
Glu
CTC
-
¡û
>C181212669
LS483427
Actinomycetota
Arcanobacterium haemolyticum NCTC8452 [LS483427]
972826
972901
+
Glu
CTC
-
¡û
>C181212670
LS483427
Actinomycetota
Arcanobacterium haemolyticum NCTC8452 [LS483427]
972968
973041
+
Glu
CTC
-
¡û
>C191051314
CP027295
Actinomycetota
Brachybacterium sp. SGAir0954 [CP027295]
2133755
2133828
+
Glu
CTC
-
¡û
>C191051315
CP027295
Actinomycetota
Brachybacterium sp. SGAir0954 [CP027295]
2133875
2133948
+
Glu
CTC
-
¡û
>C191114720
CP033902
Actinomycetota
Trueperella pyogenes TP1 [CP033902]
1027430
1027357
-
Glu
CTC
-
¡û
>C191114721
CP033902
Actinomycetota
Trueperella pyogenes TP1 [CP033902]
1026896
1026823
-
Glu
CTC
-
¡û
>C191114771
CP033903
Actinomycetota
Trueperella pyogenes TP2 [CP033903]
87660
87587
-
Glu
CTC
-
¡û
>C191114772
CP033903
Actinomycetota
Trueperella pyogenes TP2 [CP033903]
87126
87053
-
Glu
CTC
-
¡û
>C191114780
CP033904
Actinomycetota
Trueperella pyogenes TP3 [CP033904]
427260
427333
+
Glu
CTC
-
¡û
>C191114781
CP033904
Actinomycetota
Trueperella pyogenes TP3 [CP033904]
427787
427860
+
Glu
CTC
-
¡û
>C191114856
CP033905
Actinomycetota
Trueperella pyogenes TP4 [CP033905]
574302
574229
-
Glu
CTC
-
¡û
>C191114857
CP033905
Actinomycetota
Trueperella pyogenes TP4 [CP033905]
573775
573702
-
Glu
CTC
-
¡û
>C191125305
CP034438
Actinomycetota
Flaviflexus salsibiostraticola KCTC 33148 [CP034438]
885830
885757
-
Glu
CTC
-
¡û
>C191125306
CP034438
Actinomycetota
Flaviflexus salsibiostraticola KCTC 33148 [CP034438]
885676
885603
-
Glu
CTC
-
¡û
>C191128006
CP034593
Actinomycetota
Flaviflexus ciconiae H23T48 [CP034593]
1167118
1167045
-
Glu
CTC
-
¡û
>W09108368
ABTF01000001
Actinomycetota
Brachybacterium faecium DSM 4810 [ABTF]
554442
554367
-
Glu
CTC
[ENA]
¡û
>W09108369
ABTF01000001
Actinomycetota
Brachybacterium faecium DSM 4810 [ABTF]
554341
554268
-
Glu
CTC
[ENA]
¡û
>W1910321323
FSEE01000002
Actinomycetota
Mycobacteroides abscessus subsp. abscessus 417 [FSEE]
16083
16156
+
Glu
CTC
[ENA]
¡û
>W1910340109
FTLO01000027
Actinomycetota
Actinotignum timonense type strain: Marseille-P2803 [FTLO]
61595
61522
-
Glu
CTC
[ENA]
¡û
>W1910442545
FWFH01000159
Actinomycetota
Brachybacterium faecium FM_RA_Lac3 [FWFH]
1818
1891
+
Glu
CTC
[ENA]
¡û
>W1910442546
FWFH01000159
Actinomycetota
Brachybacterium faecium FM_RA_Lac3 [FWFH]
1919
1992
+
Glu
CTC
[ENA]
¡û
>W1910442584
FWFI01000036
Actinomycetota
Corynebacterium xerosis B Mi 98.15 [FWFI]
30668
30741
+
Glu
CTC
[ENA]
¡û
>W1910442585
FWFI01000036
Actinomycetota
Corynebacterium xerosis B Mi 98.15 [FWFI]
30769
30842
+
Glu
CTC
[ENA]
¡û
>W1910442586
FWFI01000036
Actinomycetota
Corynebacterium xerosis B Mi 98.15 [FWFI]
30870
30943
+
Glu
CTC
[ENA]
¡û
>W1911203291
NRGR01000019
Actinomycetota
Brachybacterium alimentarium 341_9 [NRGR]
121602
121675
+
Glu
CTC
[ENA]
¡û
>W1911203341
NRGS01000017
Actinomycetota
Brachybacterium alimentarium 908_11 [NRGS]
75255
75182
-
Glu
CTC
[ENA]
¡û
>W1911532921
OIWY01000006
Actinomycetota
Brachybacterium timonense Marseille-P4339 [OIWY]
631286
631213
-
Glu
CTC
[ENA]
¡û
>W1911596803
PNHL01000002
Actinomycetota
Brachybacterium sp. UMB0905 [PNHL]
307502
307577
+
Glu
CTC
[ENA]
¡û
>W1911653699
QDIE01000022
Actinomycetota
Actinotignum sanguinis DSM 26039 [QDIE]
368
295
-
Glu
CTC
[ENA]
¡û
>W1911702214
QOCI01000002
Actinomycetota
Brachybacterium paraconglomeratum KCTC 9916 [QOCI]
22459
22532
+
Glu
CTC
[ENA]
¡û
>W1911702215
QOCI01000002
Actinomycetota
Brachybacterium paraconglomeratum KCTC 9916 [QOCI]
22560
22633
+
Glu
CTC
[ENA]
¡û
>W1911726655
QSWH01000005
Actinomycetota
Brachybacterium saurashtrense DSM 23186 [QSWH]
119395
119468
+
Glu
CTC
[ENA]
¡û
>W1911726656
QSWH01000005
Actinomycetota
Brachybacterium saurashtrense DSM 23186 [QSWH]
119495
119570
+
Glu
CTC
[ENA]
¡û
>W1911765358
QXCP01000006
Actinomycetota
Brachybacterium sp. EE-P12 [QXCP]
190657
190730
+
Glu
CTC
[ENA]
¡û
>W1810085229
PESV01000001
Actinomycetota
Trueperella pyogenes Bu5 [PESV]
572117
572190
+
Glu
CTC
[ENA]
¡û
>W1810085230
PESV01000001
Actinomycetota
Trueperella pyogenes Bu5 [PESV]
572644
572717
+
Glu
CTC
[ENA]
¡û
>W1810187294
PKHM01000001
Actinomycetota
Dermabacter hominis UMB0490 [PKHM]
251948
252021
+
Glu
CTC
[ENA]
¡û
>W1810187946
PKHY01000011
Actinomycetota
Trueperella bernardiae UMB0116 [PKHY]
1313
1240
-
Glu
CTC
[ENA]
¡û
>W1810187947
PKHY01000011
Actinomycetota
Trueperella bernardiae UMB0116 [PKHY]
890
817
-
Glu
CTC
[ENA]
¡û
>W1810192514
PKMD01000001
Actinomycetota
Actinotignum timonense UMB0063 [PKMD]
278358
278285
-
Glu
CTC
[ENA]
¡û
>W1810192560
PKME01000001
Actinomycetota
Actinotignum timonense UMB0086 [PKME]
283068
282995
-
Glu
CTC
[ENA]
¡û
>W1810196891
PNFB01000016
Actinomycetota
Brachybacterium sp. YJGR34 [PNFB]
60270
60197
-
Glu
CTC
[ENA]
¡û
>W1810484082
QASM01000002
Actinomycetota
Trueperella pyogenes SH01 [QASM]
120938
121011
+
Glu
CTC
[ENA]
¡û
>W1810484083
QASM01000002
Actinomycetota
Trueperella pyogenes SH01 [QASM]
121465
121538
+
Glu
CTC
[ENA]
¡û
>W1810587407
QFKX01000005
Actinomycetota
Brachybacterium endophyticum M1HQ-2 [QFKX]
163473
163546
+
Glu
CTC
[ENA]
¡û
>W1810756672
QPGF01000007
Actinomycetota
Brachybacterium alimentarium 738_10 [QPGF]
135164
135237
+
Glu
CTC
[ENA]
¡û
>W1810756673
QPGF01000007
Actinomycetota
Brachybacterium alimentarium 738_10 [QPGF]
135265
135338
+
Glu
CTC
[ENA]
¡û
>W1810756721
QPGG01000009
Actinomycetota
Brachybacterium alimentarium 862_8 [QPGG]
54454
54381
-
Glu
CTC
[ENA]
¡û
>W1810756778
QPGH01000017
Actinomycetota
Brachybacterium alimentarium 876_9 [QPGH]
126781
126854
+
Glu
CTC
[ENA]
¡û
>W1810756779
QPGH01000017
Actinomycetota
Brachybacterium alimentarium 876_9 [QPGH]
126882
126955
+
Glu
CTC
[ENA]
¡û
>W1810756839
QPGI01000019
Actinomycetota
Brachybacterium alimentarium 900_8 [QPGI]
354136
354063
-
Glu
CTC
[ENA]
¡û
>W1810756840
QPGI01000019
Actinomycetota
Brachybacterium alimentarium 900_8 [QPGI]
354035
353962
-
Glu
CTC
[ENA]
¡û
>W1810756902
QPGJ01000030
Actinomycetota
Brachybacterium alimentarium 947_11 [QPGJ]
76834
76761
-
Glu
CTC
[ENA]
¡û
>W1810756913
QPGK01000004
Actinomycetota
Brachybacterium alimentarium 962_10 [QPGK]
361457
361384
-
Glu
CTC
[ENA]
¡û
>W1810756914
QPGK01000004
Actinomycetota
Brachybacterium alimentarium 962_10 [QPGK]
361356
361283
-
Glu
CTC
[ENA]
¡û
>W1810757128
QPGN01000007
Actinomycetota
Brachybacterium sp. JB7 [QPGN]
28874
28947
+
Glu
CTC
[ENA]
¡û
>C151015766
CP007003
Actinomycetota
Trueperella pyogenes TP8 [CP007003]
908298
908371
+
Glu
CTC
[Ensembl]
¡û
>C151015767
CP007003
Actinomycetota
Trueperella pyogenes TP8 [CP007003]
908825
908898
+
Glu
CTC
[Ensembl]
¡û
>C151026382
CP007519
Actinomycetota
Trueperella pyogenes TP6375 [CP007519]
766893
766820
-
Glu
CTC
[Ensembl]
¡û
>C151026383
CP007519
Actinomycetota
Trueperella pyogenes TP6375 [CP007519]
766368
766295
-
Glu
CTC
[Ensembl]
¡û
>C151037588
CP008802
Actinomycetota
Actinotignum schaalii CCUG 27420 [CP008802]
677401
677328
-
Glu
CTC
[Ensembl]
¡û
>C151096866
CP012649
Actinomycetota
Trueperella pyogenes 2012CQ-ZSH [CP012649]
1518086
1518159
+
Glu
CTC
-
¡û
>C151096867
CP012649
Actinomycetota
Trueperella pyogenes 2012CQ-ZSH [CP012649]
1518613
1518686
+
Glu
CTC
-
¡û
>W1510021901
BCAK01000008
Actinomycetota
Brachybacterium sp. SW0106-09 [BCAK]
95100
95025
-
Glu
CTC
[ENA]
¡û
>W1510021902
BCAK01000008
Actinomycetota
Brachybacterium sp. SW0106-09 [BCAK]
94998
94923
-
Glu
CTC
[ENA]
¡û
>C10100474
CP002045
Actinomycetota
Arcanobacterium haemolyticum DSM 20595 [CP002045]
1239226
1239151
-
Glu
CTC
[Ensembl]
¡û
>C10100475
CP002045
Actinomycetota
Arcanobacterium haemolyticum DSM 20595 [CP002045]
1239084
1239009
-
Glu
CTC
[Ensembl]
¡û
>C10101574
CP001643
Actinomycetota
Brachybacterium faecium DSM 4810 [CP001643]
2080173
2080098
-
Glu
CTC
[Ensembl]
¡û
>C10101575
CP001643
Actinomycetota
Brachybacterium faecium DSM 4810 [CP001643]
2080072
2079999
-
Glu
CTC
[Ensembl]
¡û
>W11301813
AGBX01000007
Actinomycetota
Brachybacterium squillarum M-6-3 [AGBX]
504675
504602
-
Glu
CTC
[ENA]
¡û
>W1510544455
CSSZ01000007
Actinomycetota
Flaviflexus massiliensis SIT4 [CSSZ]
297814
297887
+
Glu
CTC
[ENA]
¡û
>W1511351069
JRMX01000011
Actinomycetota
Arcanobacterium sp. S3PF19 [JRMX]
57529
57456
-
Glu
CTC
[ENA]
¡û
>W11177863
AGBX01000007
Actinomycetota
Brachybacterium squillarum M-6-3 [AGBX]
504776
504701
-
Glu
CTC
[ENA]
¡û
>C161039632
CP012117
Actinomycetota
Dermabacter vaginalis AD1-86 [CP012117]
1447048
1446975
-
Glu
CTC
[Ensembl]
¡û
>C161106458
LN849456
Actinomycetota
Devriesea agamarum IMP2 [LN849456]
752079
752004
-
Glu
CTC
-
¡û
>W1610051592
BBHA01000076
Actinomycetota
Brachybacterium zhongshanense JCM 15471 [BBHA]
999
925
-
Glu
CTC
[ENA]
¡û
>W1610069259
BCSI01000003
Actinomycetota
Dermabacter hominis NBRC 106157 [BCSI]
148885
148958
+
Glu
CTC
[ENA]
¡û
>W1610095049
CYUG01000011
Actinomycetota
Dermabacter indicis massiliensis [CYUG]
444832
444759
-
Glu
CTC
[ENA]
¡û
>W1610095247
CYUL01000004
Actinomycetota
Actinobaculum massiliense [CYUL]
286817
286742
-
Glu
CTC
[ENA]
¡û
>W1610095248
CYUL01000004
Actinomycetota
Actinobaculum massiliense [CYUL]
286651
286576
-
Glu
CTC
[ENA]
¡û
>W121018129
AGSO01000013
Actinomycetota
Brachybacterium paraconglomeratum LC44 [AGSO]
29942
29867
-
Glu
CTC
[ENA]
¡û
>W121018130
AGSO01000013
Actinomycetota
Brachybacterium paraconglomeratum LC44 [AGSO]
29840
29765
-
Glu
CTC
[ENA]
¡û
>W1610759902
LNIZ01000011
Actinomycetota
Trueperella bernardiae [LNIZ]
1164
1091
-
Glu
CTC
[ENA]
¡û
>W1610759903
LNIZ01000011
Actinomycetota
Trueperella bernardiae [LNIZ]
743
670
-
Glu
CTC
[ENA]
¡û
>W1610885180
LRMP01000003
Actinomycetota
Brachybacterium sp. sponge [LRMP]
335554
335629
+
Glu
CTC
[ENA]
¡û
>W1710066632
BCSI01000003
Actinomycetota
Dermabacter hominis NBRC 106157 [BCSI]
148885
148958
+
Glu
CTC
[ENA]
¡û
>W1710097844
CYUG01000011
Actinomycetota
Dermabacter indicis massiliensis [CYUG]
444832
444759
-
Glu
CTC
[ENA]
¡û
>W1710098042
CYUL01000004
Actinomycetota
Actinobaculum massiliense [CYUL]
286817
286742
-
Glu
CTC
[ENA]
¡û
>W1710098043
CYUL01000004
Actinomycetota
Actinobaculum massiliense [CYUL]
286651
286576
-
Glu
CTC
[ENA]
¡û
>W1710743648
LGYI01000013
Actinomycetota
Trueperella bernardiae [LGYI]
1013
940
-
Glu
CTC
[ENA]
¡û
>W1710743649
LGYI01000013
Actinomycetota
Trueperella bernardiae [LGYI]
592
519
-
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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