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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238339 (30 seq.)
>W1710881437
LMTB01000071
Actinomycetota
Dietzia timorensis [LMTB]
4653
4578
-
Thr
CGT
[ENA]
¡û
>W1711081611
LSSV01000001
Actinomycetota
Dietzia sp. 111N12-1 [LSSV]
33351
33426
+
Thr
CGT
[ENA]
¡û
>W1711082287
LSTT01000057
Actinomycetota
Dietzia cinnamea [LSTT]
171574
171649
+
Thr
CGT
[ENA]
¡û
>W1711139738
LVFF01000037
Actinomycetota
Dietzia maris [LVFF]
18673
18598
-
Thr
CGT
[ENA]
¡û
>W1711187601
LWPP01000403
Actinomycetota
Dietzia sp. HMSC21D01 [LWPP]
7819
7744
-
Thr
CGT
[ENA]
¡û
>W1711351222
MDCG01000121
Actinomycetota
Dietzia alimentaria [MDCG]
2901
2976
+
Thr
CGT
[ENA]
¡û
>C171044538
CP015961
Actinomycetota
Dietzia timorensis ID05-A0528 [CP015961]
618306
618381
+
Thr
CGT
-
¡û
>W131099115
AOSR01000032
Actinomycetota
Dietzia sp. UCD-THP [AOSR]
18242
18317
+
Thr
CGT
[ENA]
¡û
>WENV181169899
OEIV010014162
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
1671
1746
+
Thr
CGT
[ENA]
¢þ
>WENV170738803
LULP01004258
[LULP] marine metagenome; Red Sea water column Station 149 - depth 25m
3565
3490
-
Thr
CGT
[ENA]
¢þ
>WENV170974825
MTKY01076339
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1474
1399
-
Thr
CGT
[ENA]
¢þ
>C181017334
CP015449
Actinomycetota
Dietzia lutea YIM 80766 [CP015449]
653596
653669
+
Thr
CGT
-
¡û
>C181017383
CP015453
Actinomycetota
Dietzia psychralcaliphila ILA-1 [CP015453]
582243
582316
+
Thr
CGT
-
¡û
>C181107037
CP024869
Actinomycetota
Dietzia sp. JS16-p6b [CP024869]
578015
578090
+
Thr
CGT
-
¡û
>C181148310
CP027238
Actinomycetota
Dietzia sp. oral taxon 368 W5195 [CP027238]
1857390
1857464
+
Thr
CGT
-
¡û
>W1911279011
NTGA01000014
Actinomycetota
Dietzia natronolimnaea S-XJ-1 [NTGA]
52145
52070
-
Thr
CGT
[ENA]
¡û
>W1911422552
NXEI01000001
Actinomycetota
Dietzia sp. WMMA184 [NXEI]
1817217
1817144
-
Thr
CGT
[ENA]
¡û
>W1810463964
PZZY01000008
Actinomycetota
Dietzia psychralcaliphila DSM 44820 [PZZY]
125666
125593
-
Thr
CGT
[ENA]
¡û
>W1810580854
QETM01000005
Actinomycetota
Dietzia maris AMT [QETM]
19004
18930
-
Thr
CGT
[ENA]
¡û
>W1810722021
QNTT01000046
Actinomycetota
Dietzia maris SST1 [QNTT]
17570
17645
+
Thr
CGT
[ENA]
¡û
>W11139542
AEKG01000387
Actinomycetota
Dietzia cinnamea P4 [AEKG]
10571
10496
-
Thr
CGT
[ENA]
¡û
>W11178754
AGFF01000007
Actinomycetota
Dietzia alimentaria 72 [AGFF]
138041
138116
+
Thr
CGT
[ENA]
¡û
>W1610069390
BCSL01000007
Actinomycetota
Dietzia papillomatosis NBRC 105045 [BCSL]
88735
88810
+
Thr
CGT
[ENA]
¡û
>W1610069887
BCSW01000001
Actinomycetota
Dietzia cinnamea NBRC 102147 [BCSW]
172011
171936
-
Thr
CGT
[ENA]
¡û
>W1610743783
LMTB01000071
Actinomycetota
Dietzia timorensis [LMTB]
4653
4578
-
Thr
CGT
[ENA]
¡û
>W1610920446
LSSV01000001
Actinomycetota
Dietzia sp. 111N12-1 [LSSV]
33351
33426
+
Thr
CGT
[ENA]
¡û
>W1610921072
LSTT01000057
Actinomycetota
Dietzia cinnamea [LSTT]
171574
171649
+
Thr
CGT
[ENA]
¡û
>W1610950746
LVFF01000037
Actinomycetota
Dietzia maris [LVFF]
18673
18598
-
Thr
CGT
[ENA]
¡û
>W1710066763
BCSL01000007
Actinomycetota
Dietzia papillomatosis NBRC 105045 [BCSL]
88735
88810
+
Thr
CGT
[ENA]
¡û
>W1710067260
BCSW01000001
Actinomycetota
Dietzia cinnamea NBRC 102147 [BCSW]
172011
171936
-
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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