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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238340 (28 seq.)
>W1710881424
LMTB01000016
Actinomycetota
Dietzia timorensis [LMTB]
9494
9419
-
Arg
CCG
[ENA]
¡û
>W131099109
AOSR01000024
Actinomycetota
Dietzia sp. UCD-THP [AOSR]
117491
117566
+
Arg
CCG
[ENA]
¡û
>W1711081646
LSSV01000060
Actinomycetota
Dietzia sp. 111N12-1 [LSSV]
77925
77998
+
Arg
CCG
[ENA]
¡û
>W1711082285
LSTT01000046
Actinomycetota
Dietzia cinnamea [LSTT]
176413
176338
-
Arg
CCG
[ENA]
¡û
>W1711139743
LVFF01000039
Actinomycetota
Dietzia maris [LVFF]
43783
43708
-
Arg
CCG
[ENA]
¡û
>W1711187604
LWPP01000431
Actinomycetota
Dietzia sp. HMSC21D01 [LWPP]
2508
2433
-
Arg
CCG
[ENA]
¡û
>W1711351232
MDCG01000244
Actinomycetota
Dietzia alimentaria [MDCG]
9390
9463
+
Arg
CCG
[ENA]
¡û
>C171044551
CP015961
Actinomycetota
Dietzia timorensis ID05-A0528 [CP015961]
2171385
2171460
+
Arg
CCG
-
¡û
>WENV181170029
OEIV010020286
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
1526
1601
+
Arg
CCG
[ENA]
¢þ
>C181017352
CP015449
Actinomycetota
Dietzia lutea YIM 80766 [CP015449]
2098357
2098430
+
Arg
CCG
-
¡û
>C181017401
CP015453
Actinomycetota
Dietzia psychralcaliphila ILA-1 [CP015453]
2181326
2181401
+
Arg
CCG
-
¡û
>C181107054
CP024869
Actinomycetota
Dietzia sp. JS16-p6b [CP024869]
2124324
2124399
+
Arg
CCG
-
¡û
>C181148328
CP027238
Actinomycetota
Dietzia sp. oral taxon 368 W5195 [CP027238]
3333467
3333540
+
Arg
CCG
-
¡û
>W1911279013
NTGA01000017
Actinomycetota
Dietzia natronolimnaea S-XJ-1 [NTGA]
66982
67057
+
Arg
CCG
[ENA]
¡û
>W1911422568
NXEI01000001
Actinomycetota
Dietzia sp. WMMA184 [NXEI]
231280
231207
-
Arg
CCG
[ENA]
¡û
>W1810463939
PZZY01000003
Actinomycetota
Dietzia psychralcaliphila DSM 44820 [PZZY]
46487
46412
-
Arg
CCG
[ENA]
¡û
>W1810580870
QETM01000035
Actinomycetota
Dietzia maris AMT [QETM]
33358
33431
+
Arg
CCG
[ENA]
¡û
>W1810721979
QNTT01000002
Actinomycetota
Dietzia maris SST1 [QNTT]
147983
147910
-
Arg
CCG
[ENA]
¡û
>W11139518
AEKG01000113
Actinomycetota
Dietzia cinnamea P4 [AEKG]
2775
2700
-
Arg
CCG
[ENA]
¡û
>W11178780
AGFF01000023
Actinomycetota
Dietzia alimentaria 72 [AGFF]
89998
89923
-
Arg
CCG
[ENA]
¡û
>W1610069404
BCSL01000025
Actinomycetota
Dietzia papillomatosis NBRC 105045 [BCSL]
25074
25149
+
Arg
CCG
[ENA]
¡û
>W1610069888
BCSW01000002
Actinomycetota
Dietzia cinnamea NBRC 102147 [BCSW]
138591
138516
-
Arg
CCG
[ENA]
¡û
>W1610743770
LMTB01000016
Actinomycetota
Dietzia timorensis [LMTB]
9494
9419
-
Arg
CCG
[ENA]
¡û
>W1610920481
LSSV01000060
Actinomycetota
Dietzia sp. 111N12-1 [LSSV]
77925
77998
+
Arg
CCG
[ENA]
¡û
>W1610921070
LSTT01000046
Actinomycetota
Dietzia cinnamea [LSTT]
176413
176338
-
Arg
CCG
[ENA]
¡û
>W1610950751
LVFF01000039
Actinomycetota
Dietzia maris [LVFF]
43783
43708
-
Arg
CCG
[ENA]
¡û
>W1710066777
BCSL01000025
Actinomycetota
Dietzia papillomatosis NBRC 105045 [BCSL]
25074
25149
+
Arg
CCG
[ENA]
¡û
>W1710067261
BCSW01000002
Actinomycetota
Dietzia cinnamea NBRC 102147 [BCSW]
138591
138516
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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