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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238342 (32 seq.)
>W1710881439
LMTB01000076
Actinomycetota
Dietzia timorensis [LMTB]
10302
10229
-
Glu
TTC
[ENA]
¡û
>W1711081613
LSSV01000001
Actinomycetota
Dietzia sp. 111N12-1 [LSSV]
275444
275517
+
Glu
TTC
[ENA]
¡û
>W1711082303
LSTT01000223
Actinomycetota
Dietzia cinnamea [LSTT]
9234
9161
-
Glu
TTC
[ENA]
¡û
>W1711139718
LVFF01000006
Actinomycetota
Dietzia maris [LVFF]
10383
10310
-
Glu
TTC
[ENA]
¡û
>W1711187608
LWPP01000477
Actinomycetota
Dietzia sp. HMSC21D01 [LWPP]
5338
5265
-
Glu
TTC
[ENA]
¡û
>W1711351216
MDCG01000061
Actinomycetota
Dietzia alimentaria [MDCG]
872
799
-
Glu
TTC
[ENA]
¡û
>C171044540
CP015961
Actinomycetota
Dietzia timorensis ID05-A0528 [CP015961]
862933
863006
+
Glu
TTC
-
¡û
>W131099089
AOSR01000008
Actinomycetota
Dietzia sp. UCD-THP [AOSR]
9313
9240
-
Glu
TTC
[ENA]
¡û
>WENV181169793
OEIV010010329
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
459
532
+
Glu
TTC
[ENA]
¢þ
>W141233322
BAVQ01000022
Actinomycetota
Tomitella biformata AHU 1821 [BAVQ]
116442
116367
-
Glu
TTC
[ENA]
¡û
>WENV170974317
MTKY01057672
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
882
955
+
Glu
TTC
[ENA]
¢þ
>C181017336
CP015449
Actinomycetota
Dietzia lutea YIM 80766 [CP015449]
902140
902213
+
Glu
TTC
-
¡û
>C181017385
CP015453
Actinomycetota
Dietzia psychralcaliphila ILA-1 [CP015453]
845992
846065
+
Glu
TTC
-
¡û
>C181107039
CP024869
Actinomycetota
Dietzia sp. JS16-p6b [CP024869]
826733
826806
+
Glu
TTC
-
¡û
>C181148312
CP027238
Actinomycetota
Dietzia sp. oral taxon 368 W5195 [CP027238]
2094955
2095028
+
Glu
TTC
-
¡û
>C191130620
CP034766
Actinomycetota
Rhodococcus sp. X156 [CP034766]
3168736
3168663
-
Glu
TTC
-
¡û
>W1911279026
NTGA01000031
Actinomycetota
Dietzia natronolimnaea S-XJ-1 [NTGA]
9096
9023
-
Glu
TTC
[ENA]
¡û
>W1911422554
NXEI01000001
Actinomycetota
Dietzia sp. WMMA184 [NXEI]
1539764
1539691
-
Glu
TTC
[ENA]
¡û
>W1810463960
PZZY01000007
Actinomycetota
Dietzia psychralcaliphila DSM 44820 [PZZY]
136418
136491
+
Glu
TTC
[ENA]
¡û
>W1810580873
QETM01000046
Actinomycetota
Dietzia maris AMT [QETM]
18953
19026
+
Glu
TTC
[ENA]
¡û
>W1810721982
QNTT01000004
Actinomycetota
Dietzia maris SST1 [QNTT]
116852
116925
+
Glu
TTC
[ENA]
¡û
>SRA1014972
SRR023845.404035
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
30
103
+
Glu
TTC
[SRA]
>W11139533
AEKG01000321
Actinomycetota
Dietzia cinnamea P4 [AEKG]
12934
13007
+
Glu
TTC
[ENA]
¡û
>W11178791
AGFF01000033
Actinomycetota
Dietzia alimentaria 72 [AGFF]
14595
14522
-
Glu
TTC
[ENA]
¡û
>W1610069405
BCSL01000026
Actinomycetota
Dietzia papillomatosis NBRC 105045 [BCSL]
44601
44674
+
Glu
TTC
[ENA]
¡û
>W1610069912
BCSW01000022
Actinomycetota
Dietzia cinnamea NBRC 102147 [BCSW]
8909
8836
-
Glu
TTC
[ENA]
¡û
>W1610743785
LMTB01000076
Actinomycetota
Dietzia timorensis [LMTB]
10302
10229
-
Glu
TTC
[ENA]
¡û
>W1610920448
LSSV01000001
Actinomycetota
Dietzia sp. 111N12-1 [LSSV]
275444
275517
+
Glu
TTC
[ENA]
¡û
>W1610921088
LSTT01000223
Actinomycetota
Dietzia cinnamea [LSTT]
9234
9161
-
Glu
TTC
[ENA]
¡û
>W1610950726
LVFF01000006
Actinomycetota
Dietzia maris [LVFF]
10383
10310
-
Glu
TTC
[ENA]
¡û
>W1710066778
BCSL01000026
Actinomycetota
Dietzia papillomatosis NBRC 105045 [BCSL]
44601
44674
+
Glu
TTC
[ENA]
¡û
>W1710067285
BCSW01000022
Actinomycetota
Dietzia cinnamea NBRC 102147 [BCSW]
8909
8836
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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