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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238346 (36 seq.)
>W131046038
AMSA01000036
Betaproteobacteria
Herbaspirillum rubrisubalbicans Os45 [AMSA]
1183
1258
+
Thr
CGT
[ENA]
¡û
>W131046086
AMSB01000022
Betaproteobacteria
Herbaspirillum rubrisubalbicans Os34 [AMSB]
5720
5645
-
Thr
CGT
[ENA]
¡û
>W131062264
ANJR01000014
Betaproteobacteria
Herbaspirillum huttiense subsp. putei IAM 15032 [ANJR]
4825
4750
-
Thr
CGT
[ENA]
¡û
>W1711430733
MIJG01000008
Betaproteobacteria
Herbaspirillum camelliae WT00C [MIJG]
1858758
1858833
+
Thr
CGT
[ENA]
¡û
>W1711765142
MUXB01000168
Betaproteobacteria
Herbaspirillum sp. VT-16-41 [MUXB]
171629
171704
+
Thr
CGT
[ENA]
¡û
>W1712110272
NJGU01000006
Betaproteobacteria
Herbaspirillum robiniae HZ10 [NJGU]
359603
359678
+
Thr
CGT
[ENA]
¡û
>W1712110338
NJGV01000028
Betaproteobacteria
Herbaspirillum aquaticum [NJGV]
487
562
+
Thr
CGT
[ENA]
¡û
>C171021217
CP013136
Betaproteobacteria
Herbaspirillum seropedicae AU14040 [CP013136]
3839909
3839984
+
Thr
CGT
-
¡û
>C171085374
CP018845
Betaproteobacteria
Herbaspirillum robiniae AA6 [CP018845]
5089777
5089702
-
Thr
CGT
-
¡û
>W141003831
AEEC02000022
Betaproteobacteria
Herbaspirillum frisingense GSF30 [AEEC]
82162
82237
+
Thr
CGT
[ENA]
¡û
>W141223405
BADF01000400
Betaproteobacteria
Herbaspirillum sp. B39 [BADF]
1356
1431
+
Thr
CGT
[ENA]
¡û
>W141223501
BADI01000720
Betaproteobacteria
Herbaspirillum sp. B65 [BADI]
9954
9879
-
Thr
CGT
[ENA]
¡û
>W141223550
BADJ01001286
Betaproteobacteria
Herbaspirillum sp. B501 [BADJ]
5845
5920
+
Thr
CGT
[ENA]
¡û
>WENV183727903
PJTP01004721
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
1021
1096
+
Thr
CGT
[ENA]
¢þ
>WENV183730145
PJTR01001300
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
997
1072
+
Thr
CGT
[ENA]
¢þ
>WENV183735032
PJUA01000459
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
3094
3019
-
Thr
CGT
[ENA]
¢þ
>WENV183735816
PJUB01003710
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
1971
1896
-
Thr
CGT
[ENA]
¢þ
>WENV183739498
PJUE01024346
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
451
376
-
Thr
CGT
[ENA]
¢þ
>WENV183743631
PJUJ01012777
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
391
316
-
Thr
CGT
[ENA]
¢þ
>WENV170165610
CEON01196926
[CEON] marine metagenome genome assembly TARA_034_SRF_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
753
678
-
Thr
CGT
[ENA]
¢þ
>WENV170201444
CEPQ01020863
[CEPQ] marine metagenome genome assembly TARA_038_MES_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
16233
16158
-
Thr
CGT
[ENA]
¢þ
>C191029348
CP024996
Betaproteobacteria
Herbaspirillum rubrisubalbicans DSM 11543 [CP024996]
4177525
4177600
+
Thr
CGT
-
¡û
>C191124245
CP034395
Betaproteobacteria
Herbaspirillum seropedicae AU13965 [CP034395]
3870737
3870812
+
Thr
CGT
-
¡û
>C191156631
CP037993
Betaproteobacteria
Herbaspirillum huttiense NFYY 53159 [CP037993]
4013257
4013332
+
Thr
CGT
-
¡û
>W1910577859
JUGD01000012
Betaproteobacteria
Herbaspirillum rubrisubalbicans Os38 [JUGD]
201351
201426
+
Thr
CGT
[ENA]
¡û
>W1910578286
JWJC01000003
Betaproteobacteria
Herbaspirillum rubrisubalbicans Os44 [JWJC]
144751
144676
-
Thr
CGT
[ENA]
¡û
>W1810194072
PKOI01000033
Betaproteobacteria
Herbaspirillum sp. BH-1 [PKOI]
33860
33935
+
Thr
CGT
[ENA]
¡û
>C151087580
CP011930
Betaproteobacteria
Herbaspirillum seropedicae Z67 [CP011930]
3978932
3979007
+
Thr
CGT
[Ensembl]
¡û
>C10107814
CP002039
Betaproteobacteria
Herbaspirillum seropedicae SmR1 [CP002039]
3982644
3982719
+
Thr
CGT
[Ensembl]
¡û
>W1511683834
LFLT01000012
Betaproteobacteria
Herbaspirillum chlorophenolicum CPW301 [LFLT]
57050
56975
-
Thr
CGT
[ENA]
¡û
>C161060453
CP013737
Betaproteobacteria
Herbaspirillum rubrisubalbicans M1 [CP013737]
4089238
4089313
+
Thr
CGT
[Ensembl]
¡û
>W1610070418
BCTG01000002
Betaproteobacteria
Herbaspirillum chlorophenolicum NBRC 102525 [BCTG]
203406
203331
-
Thr
CGT
[ENA]
¡û
>W1610071868
BCUJ01000048
Betaproteobacteria
Herbaspirillum rubrisubalbicans NBRC 102523 [BCUJ]
3031
2956
-
Thr
CGT
[ENA]
¡û
>W121068720
AJVC01000004
Betaproteobacteria
Herbaspirillum sp. GW103 [AJVC]
383429
383504
+
Thr
CGT
[ENA]
¡û
>W1710067791
BCTG01000002
Betaproteobacteria
Herbaspirillum chlorophenolicum NBRC 102525 [BCTG]
203406
203331
-
Thr
CGT
[ENA]
¡û
>W1710069070
BCUJ01000048
Betaproteobacteria
Herbaspirillum rubrisubalbicans NBRC 102523 [BCUJ]
3031
2956
-
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK