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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238359 (49 seq.)
>W1711224198
LXTW01000003
Gammaproteobacteria
Moraxella nonliquefaciens [LXTW]
185324
185249
-
His
GTG
[ENA]
¡û
>W1711268986
LZDM01000007
Gammaproteobacteria
Moraxella nonliquefaciens [LZDM]
35272
35197
-
His
GTG
[ENA]
¡û
>W1711269026
LZDN01000006
Gammaproteobacteria
Moraxella nonliquefaciens [LZDN]
62849
62774
-
His
GTG
[ENA]
¡û
>W1711269222
LZDR01000097
Gammaproteobacteria
Moraxella lacunata [LZDR]
29873
29948
+
His
GTG
[ENA]
¡û
>W1711282087
LZMS01000117
Gammaproteobacteria
Moraxella lacunata [LZMS]
1737
1662
-
His
GTG
[ENA]
¡û
>W131223267
AUBY01000009
Gammaproteobacteria
Aliagarivorans marinus DSM 23064 [AUBY]
187847
187922
+
His
GTG
[ENA]
¡û
>W131223296
AUBY01000040
Gammaproteobacteria
Aliagarivorans marinus DSM 23064 [AUBY]
9960
10035
+
His
GTG
[ENA]
¡û
>W131223303
AUBZ01000002
Gammaproteobacteria
Aliagarivorans taiwanensis DSM 22990 [AUBZ]
185721
185796
+
His
GTG
[ENA]
¡û
>W131223336
AUBZ01000027
Gammaproteobacteria
Aliagarivorans taiwanensis DSM 22990 [AUBZ]
67696
67771
+
His
GTG
[ENA]
¡û
>W131228781
AUGF01000034
Gammaproteobacteria
Moraxella caprae DSM 19149 [AUGF]
2060
2135
+
His
GTG
[ENA]
¡û
>W131241475
BARX01000001
Gammaproteobacteria
Agarivorans albus MKT 106 [BARX]
120833
120758
-
His
GTG
[ENA]
¡û
>W131241479
BARX01000004
Gammaproteobacteria
Agarivorans albus MKT 106 [BARX]
180485
180410
-
His
GTG
[ENA]
¡û
>W1711765775
MUXV01000015
Gammaproteobacteria
Moraxella bovis [MUXV]
38627
38702
+
His
GTG
[ENA]
¡û
>W1711799870
MXAN01000136
Gammaproteobacteria
Moraxella lacunata [MXAN]
247
172
-
His
GTG
[ENA]
¡û
>W1711799927
MXAP01000029
Gammaproteobacteria
Moraxella equi [MXAP]
49123
49048
-
His
GTG
[ENA]
¡û
>W141055148
AOMT01000026
Gammaproteobacteria
Moraxella bovoculi 237 [AOMT]
2410
2335
-
His
GTG
[ENA]
¡û
>WENV180711391
ODFN01000388
[ODFN] human metagenome; G_DNA_Anterior nares
305
380
+
His
GTG
[ENA]
¢þ
>WENV180711651
ODFQ01000198
[ODFQ] human metagenome; G_DNA_Anterior nares
4157
4082
-
His
GTG
[ENA]
¢þ
>WENV180838846
ODKH01000001
[ODKH] human metagenome; G_DNA_Anterior nares
188760
188685
-
His
GTG
[ENA]
¢þ
>WENV180878950
ODLY01009853
[ODLY] human metagenome; G_DNA_Anterior nares
279
204
-
His
GTG
[ENA]
¢þ
>WENV180937538
ODTW01006561
[ODTW] human metagenome; G_DNA_Anterior nares
227
152
-
His
GTG
[ENA]
¢þ
>WENV180984636
ODVI01000002
[ODVI] human metagenome; G_DNA_Anterior nares
34820
34745
-
His
GTG
[ENA]
¢þ
>WENV181131494
OEGC01000728
[OEGC] human metagenome; G_DNA_Anterior nares
236
161
-
His
GTG
[ENA]
¢þ
>WENV170023762
BCQL01002749
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
653
578
-
His
GTG
[ENA]
¢þ
>C181190880
CP030241
Gammaproteobacteria
Moraxella bovis [CP030241]
2041617
2041692
+
His
GTG
-
¡û
>C191008784
CP011380
Gammaproteobacteria
Moraxella bovoculi 57922 [CP011380]
1463310
1463385
+
His
GTG
-
¡û
>W1910178264
BJEQ01000003
Gammaproteobacteria
Agarivorans sp. Toyoura001 [BJEQ]
27933
27858
-
His
GTG
[ENA]
¡û
>W1910178301
BJEQ01000029
Gammaproteobacteria
Agarivorans sp. Toyoura001 [BJEQ]
21262
21337
+
His
GTG
[ENA]
¡û
>W1910977012
NKHK01000002
Gammaproteobacteria
Moraxella sp. VT-16-12 [NKHK]
13494
13419
-
His
GTG
[ENA]
¡û
>W1810596792
QGGU01000001
Gammaproteobacteria
Pleionea mediterranea DSM 25350 [QGGU]
407603
407678
+
His
GTG
[ENA]
¡û
>C151001087
AP012978
Gammaproteobacteria
endosymbiont of unidentified scaly snail isolate Monju [AP012978]
833369
833444
+
His
GTG
[Ensembl]
¡û
>C161032148
CP011158
Gammaproteobacteria
Moraxella ovis 199/55 [CP011158]
618960
618885
-
His
GTG
[Ensembl]
¡û
>C161034455
CP011374
Gammaproteobacteria
Moraxella bovoculi 58069 [CP011374]
1458774
1458849
+
His
GTG
[Ensembl]
¡û
>C161034508
CP011376
Gammaproteobacteria
Moraxella bovoculi 22581 [CP011376]
1713984
1714059
+
His
GTG
-
¡û
>C161034575
CP011377
Gammaproteobacteria
Moraxella bovoculi 23343 [CP011377]
630198
630123
-
His
GTG
-
¡û
>C161034626
CP011378
Gammaproteobacteria
Moraxella bovoculi 28389 [CP011378]
634836
634761
-
His
GTG
[Ensembl]
¡û
>C161034677
CP011379
Gammaproteobacteria
Moraxella bovoculi 33362 [CP011379]
591072
590997
-
His
GTG
-
¡û
>C161034706
CP011381
Gammaproteobacteria
Moraxella bovoculi 58086 [CP011381]
1421628
1421703
+
His
GTG
-
¡û
>C161049612
CP013021
Gammaproteobacteria
Agarivorans gilvus WH0801 [CP013021]
30775
30850
+
His
GTG
-
¡û
>C161049639
CP013021
Gammaproteobacteria
Agarivorans gilvus WH0801 [CP013021]
3082651
3082726
+
His
GTG
-
¡û
>W1610071906
BCUK01000360
Gammaproteobacteria
Moraxella lacunata NBRC 102154 [BCUK]
227
152
-
His
GTG
[ENA]
¡û
>W1610076304
BCYQ01000018
Gammaproteobacteria
Moraxella oblonga NBRC 102422 [BCYQ]
7856
7781
-
His
GTG
[ENA]
¡û
>W1611008569
LXTW01000003
Gammaproteobacteria
Moraxella nonliquefaciens [LXTW]
185324
185249
-
His
GTG
[ENA]
¡û
>W1611029798
LZDM01000007
Gammaproteobacteria
Moraxella nonliquefaciens [LZDM]
35272
35197
-
His
GTG
[ENA]
¡û
>W1611029838
LZDN01000006
Gammaproteobacteria
Moraxella nonliquefaciens [LZDN]
62849
62774
-
His
GTG
[ENA]
¡û
>W1611030034
LZDR01000097
Gammaproteobacteria
Moraxella lacunata [LZDR]
29873
29948
+
His
GTG
[ENA]
¡û
>W1611041298
LZMS01000117
Gammaproteobacteria
Moraxella lacunata [LZMS]
1737
1662
-
His
GTG
[ENA]
¡û
>W1710069108
BCUK01000360
Gammaproteobacteria
Moraxella lacunata NBRC 102154 [BCUK]
227
152
-
His
GTG
[ENA]
¡û
>W1710074119
BCYQ01000018
Gammaproteobacteria
Moraxella oblonga NBRC 102422 [BCYQ]
7856
7781
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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