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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238364 (54 seq.)
>W1710909217
LNQI01000009
Bacillota
[Bacillus] enclensis [LNQI]
102038
101966
-
Ala
GGC
[ENA]
¡û
>W1711020308
LQYN01000089
Bacillota
Heyndrickxia sporothermodurans [LQYN]
3736
3664
-
Ala
GGC
[ENA]
¡û
>W1711129995
LUUN01000003
Bacillota
Cytobacillus horneckiae [LUUN]
1811102
1811174
+
Ala
GGC
[ENA]
¡û
>W1711224839
LXUH01000138
Bacillota
Bacillus sp. MKU004 [LXUH]
13097
13169
+
Ala
GGC
[ENA]
¡û
>W1711434738
MINN01000071
Bacillota
Rossellomorea aquimaris [MINN]
41747
41675
-
Ala
GGC
[ENA]
¡û
>W1711720451
MTIT01000002
Bacillota
Sutcliffiella halmapala halmapalus [MTIT]
1027168
1027096
-
Ala
GGC
[ENA]
¡û
>W1711720644
MTIV01000010
Bacillota
Evansella clarkii [MTIV]
41550
41625
+
Ala
GGC
[ENA]
¡û
>W1711775028
MVJM01000002
Bacillota
Halalkalibacter urbisdiaboli 45385 [MVJM]
563655
563583
-
Ala
GGC
[ENA]
¡û
>W131065529
ANNK01000044
Bacillota
Halalkalibacterium ligniniphilum L1(2012) [ANNK]
15885
15957
+
Ala
GGC
[ENA]
¡û
>WENV180101263
OAOU01014844
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
281
209
-
Ala
GGC
[ENA]
¢þ
>W08003027
ABFU01000068
Bacillota
Bacillus coahuilensis m4-4 [ABFU]
7643
7715
+
Ala
GGC
[ENA]
¡û
>W141263819
CCDN010000005
Bacillota
Rossellomorea vietnamensis [CCDN]
336775
336703
-
Ala
GGC
[ENA]
¡û
>W141266364
CCMN01000022
Bacillota
Rossellomorea aquimaris [CCMN]
14937
15009
+
Ala
GGC
[ENA]
¡û
>WENV170015198
AZIE01012288
[AZIE] marine sediment metagenome; sample MGS-MCh from oil contaminated site at the lagoon of Mar Chica, located in the north-west
433
361
-
Ala
GGC
[ENA]
¢þ
>C181033553
CP018866
Bacillota
Sutcliffiella cohnii DSM 6307 [CP018866]
3559542
3559614
+
Ala
GGC
-
¡û
>C191099121
CP033051
Bacillota
Rossellomorea marisflavi Bac144 [CP033051]
214203
214131
-
Ala
GGC
-
¡û
>W1910227916
FNMN01000002
Bacillota
Bacillus sp. ES3 [FNMN]
522750
522822
+
Ala
GGC
[ENA]
¡û
>W1910805397
MTSR01000001
Bacillota
Evansella clarkii CCTCC AB 2014251 [MTSR]
778557
778632
+
Ala
GGC
[ENA]
¡û
>W1910827217
MWSH01000017
Bacillota
Bacillus sp. DSM 27956 [MWSH]
17870
17942
+
Ala
GGC
[ENA]
¡û
>W1910843143
NAZA01000121
Bacillota
Heyndrickxia sporothermodurans SA01 [NAZA]
3359
3431
+
Ala
GGC
[ENA]
¡û
>W1910843216
NAZB01000020
Bacillota
Heyndrickxia sporothermodurans SAD [NAZB]
3892
3820
-
Ala
GGC
[ENA]
¡û
>W1910843357
NAZC01000443
Bacillota
Heyndrickxia sporothermodurans BR12 [NAZC]
2205
2133
-
Ala
GGC
[ENA]
¡û
>W1910843372
NAZD01000057
Bacillota
Heyndrickxia sporothermodurans DSM 10599 [NAZD]
2979
3051
+
Ala
GGC
[ENA]
¡û
>W1910930714
NIST01000001
Bacillota
Evansella halocellulosilytica FJAT-44876 [NIST]
4953621
4953546
-
Ala
GGC
[ENA]
¡û
>W1911299497
NTUP01000002
Bacillota
Bacillus sp. AFS015802 [NTUP]
176243
176171
-
Ala
GGC
[ENA]
¡û
>W1911503164
OEQK01000007
Bacillota
Salirhabdus sp. Marseille-P4669 [OEQK]
200305
200232
-
Ala
GGC
[ENA]
¡û
>W1810057753
PDIY01000001
Bacillota
Bacillus sp. es.034 [PDIY]
1690045
1689973
-
Ala
GGC
[ENA]
¡û
>W1810357483
PVNS01000020
Bacillota
Alkalicoccus urumqiensis BZ-SZ-XJ18 [PVNS]
15416
15491
+
Ala
GGC
[ENA]
¡û
>W1810367776
PVYY01000017
Bacillota
Bacillus sp. V-88 [PVYY]
17870
17942
+
Ala
GGC
[ENA]
¡û
>W1810533187
QCZG01000042
Bacillota
Pueribacillus theae T8 [QCZG]
25554
25626
+
Ala
GGC
[ENA]
¡û
>W1810658932
QJJR01000011
Bacillota
Streptohalobacillus salinus DSM 22440 [QJJR]
31934
31861
-
Ala
GGC
[ENA]
¡û
>W1810720552
QNRJ01000004
Bacillota
Rossellomorea aquimaris 97B [QNRJ]
38370
38442
+
Ala
GGC
[ENA]
¡û
>W10112741
ADFH01000002
Bacillota
Evansella cellulosilytica DSM 2522 [ADFH]
21959
22034
+
Ala
GGC
[ENA]
¡û
>C11102653
CP002394
Bacillota
Evansella cellulosilytica DSM 2522 [CP002394]
3602591
3602516
-
Ala
GGC
[Ensembl]
¡û
>W11115968
ADFH01000002
Bacillota
Evansella cellulosilytica DSM 2522 [ADFH]
21959
22034
+
Ala
GGC
[ENA]
¡û
>W1511519341
JXZC01000002
Bacillota
Rossellomorea aquimaris JM7 [JXZC]
23344
23416
+
Ala
GGC
[ENA]
¡û
>W1610072326
BCUW01000007
Bacillota
Sutcliffiella cohnii NBRC 15565 [BCUW]
79732
79660
-
Ala
GGC
[ENA]
¡û
>W1610073087
BCVQ01000065
Bacillota
Rossellomorea vietnamensis NBRC 101237 [BCVQ]
7353
7425
+
Ala
GGC
[ENA]
¡û
>W1610515130
FMAU01000006
Bacillota
[Bacillus] enclensis [FMAU]
102038
101966
-
Ala
GGC
[ENA]
¡û
>W1610594768
LDYF01000041
Bacillota
Bacillus coahuilensis m2-6 [LDYF]
23527
23455
-
Ala
GGC
[ENA]
¡û
>W1610594850
LDYG01000039
Bacillota
Bacillus coahuilensis p1.1.43 [LDYG]
23178
23106
-
Ala
GGC
[ENA]
¡û
>W1610638669
LIXZ01000010
Bacillota
Rossellomorea vietnamensis [LIXZ]
112188
112116
-
Ala
GGC
[ENA]
¡û
>W1610767576
LNQI01000009
Bacillota
[Bacillus] enclensis [LNQI]
102038
101966
-
Ala
GGC
[ENA]
¡û
>W1610868596
LQYN01000089
Bacillota
Heyndrickxia sporothermodurans [LQYN]
3736
3664
-
Ala
GGC
[ENA]
¡û
>W1610941068
LUUN01000003
Bacillota
Cytobacillus horneckiae [LUUN]
1811102
1811174
+
Ala
GGC
[ENA]
¡û
>W1611008803
LXUH01000138
Bacillota
Bacillus sp. MKU004 [LXUH]
13097
13169
+
Ala
GGC
[ENA]
¡û
>W1710069528
BCUW01000007
Bacillota
Sutcliffiella cohnii NBRC 15565 [BCUW]
79732
79660
-
Ala
GGC
[ENA]
¡û
>W1710070205
BCVQ01000065
Bacillota
Rossellomorea vietnamensis NBRC 101237 [BCVQ]
7353
7425
+
Ala
GGC
[ENA]
¡û
>W1710500820
FMAU01000006
Bacillota
[Bacillus] enclensis [FMAU]
102038
101966
-
Ala
GGC
[ENA]
¡û
>W1710531139
FNPI01000014
Bacillota
Evansella caseinilytica caseinilyticus [FNPI]
122106
122031
-
Ala
GGC
[ENA]
¡û
>W1710604710
FVZH01000017
Bacillota
Bacillus sp. V-88 [FVZH]
17870
17942
+
Ala
GGC
[ENA]
¡û
>W1710714220
LDYF01000041
Bacillota
Bacillus coahuilensis m2-6 [LDYF]
23527
23455
-
Ala
GGC
[ENA]
¡û
>W1710714302
LDYG01000039
Bacillota
Bacillus coahuilensis p1.1.43 [LDYG]
23178
23106
-
Ala
GGC
[ENA]
¡û
>W1710774500
LIXZ01000010
Bacillota
Rossellomorea vietnamensis [LIXZ]
112188
112116
-
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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