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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238386 (38 seq.)
>W131236944
AUMS01000004
Betaproteobacteria
Chitinilyticum aquatile DSM 21506 [AUMS]
439167
439242
+
Lys
CTT
[ENA]
¡û
>W131236945
AUMS01000004
Betaproteobacteria
Chitinilyticum aquatile DSM 21506 [AUMS]
439279
439354
+
Lys
CTT
[ENA]
¡û
>W1711387444
MEGQ01000050
Betaproteobacteria
Thiomonas sp. SCN 64-16 [MEGQ]
11806
11731
-
Lys
CTT
[ENA]
¡û
>C171094928
CP019509
Betaproteobacteria
Aquaspirillum sp. LM1 [CP019509]
3507888
3507963
+
Lys
CTT
-
¡û
>C171103254
CP020046
Betaproteobacteria
Thiomonas intermedia ATCC 15466 [CP020046]
2351352
2351277
-
Lys
CTT
-
¡û
>WENV181027344
ODXD01000130
[ODXD] human metagenome; G_DNA_Buccal mucosa
101
176
+
Lys
CTT
[ENA]
¢þ
>WENV181230988
OFEK01006658
[OFEK] activated sludge metagenome; Anaerobic digester
4017
4092
+
Lys
CTT
[ENA]
¢þ
>WENV170705815
LNAP01000379
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
21126
21051
-
Lys
CTT
[ENA]
¢þ
>WENV170706807
LNAP01007000
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
29
104
+
Lys
CTT
[ENA]
¢þ
>WENV170707164
LNAP01014082
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
5367
5292
-
Lys
CTT
[ENA]
¢þ
>WENV170708387
LNAP01076737
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
671
596
-
Lys
CTT
[ENA]
¢þ
>WENV170961873
MLJW01003435
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
1616
1691
+
Lys
CTT
[ENA]
¢þ
>C191023148
CP022987
Betaproteobacteria
Pollutimonas thiosulfatoxidans YE3 [CP022987]
1548897
1548822
-
Lys
CTT
-
¡û
>W141557764
JHVK01000004
Betaproteobacteria
Microvirgula aerodenitrificans DSM 15089 [JHVK]
109643
109568
-
Lys
CTT
[ENA]
¡û
>W141557765
JHVK01000004
Betaproteobacteria
Microvirgula aerodenitrificans DSM 15089 [JHVK]
109535
109460
-
Lys
CTT
[ENA]
¡û
>W1810089021
PGEK01000012
Betaproteobacteria
Castellaniella caeni CD04 [PGEK]
69393
69468
+
Lys
CTT
[ENA]
¡û
>W1810696481
QLTJ01000001
Betaproteobacteria
Microvirgula sp. AG722 [QLTJ]
528975
528900
-
Lys
CTT
[ENA]
¡û
>W1810696482
QLTJ01000001
Betaproteobacteria
Microvirgula sp. AG722 [QLTJ]
528867
528792
-
Lys
CTT
[ENA]
¡û
>W10105778
ACXV01000001
Betaproteobacteria
Thiomonas intermedia K12 [ACXV]
2659
2584
-
Lys
CTT
[ENA]
¡û
>C10113337
CP002021
Betaproteobacteria
Thiomonas intermedia [CP002021]
2615051
2615126
+
Lys
CTT
[Ensembl]
¡û
>W11108098
ACXV01000001
Betaproteobacteria
Thiomonas intermedia K12 [ACXV]
2659
2584
-
Lys
CTT
[ENA]
¡û
>W1510741265
CYHF01000001
Betaproteobacteria
Thiomonas bhubaneswarensis DSM 18181 [CYHF]
23113
23188
+
Lys
CTT
[ENA]
¡û
>C11118216
CP002663
Betaproteobacteria
Pusillimonas sp. T7-7 [CP002663]
1644123
1644048
-
Lys
CTT
[Ensembl]
¡û
>C121016353
FP475956
Betaproteobacteria
Thiomonas arsenitoxydans 3As [FP475956]
2789057
2789132
+
Lys
CTT
[Ensembl]
¡û
>W1610074251
BCWN01000003
Betaproteobacteria
Castellaniella caeni NBRC 101664 [BCWN]
78266
78191
-
Lys
CTT
[ENA]
¡û
>W1610085403
CTRI01000027
Betaproteobacteria
Thiomonas arsenitoxydans B1 [CTRI]
282624
282699
+
Lys
CTT
[ENA]
¡û
>W1610085437
CTRJ01000012
Betaproteobacteria
Thiomonas arsenitoxydans CB6 [CTRJ]
34270
34195
-
Lys
CTT
[ENA]
¡û
>W1610085486
CTRK01000047
Betaproteobacteria
Thiomonas arsenitoxydans ACO3 [CTRK]
279980
280055
+
Lys
CTT
[ENA]
¡û
>W1610085527
CTRL01000047
Betaproteobacteria
Thiomonas arsenitoxydans ACO7 [CTRL]
279977
280052
+
Lys
CTT
[ENA]
¡û
>W1610085563
CTRM01000027
Betaproteobacteria
Thiomonas sp. CB3 [CTRM]
21348
21273
-
Lys
CTT
[ENA]
¡û
>W1610632406
LIPV01000001
Betaproteobacteria
Thiomonas bhubaneswarensis [LIPV]
23113
23188
+
Lys
CTT
[ENA]
¡û
>W1710071369
BCWN01000003
Betaproteobacteria
Castellaniella caeni NBRC 101664 [BCWN]
78266
78191
-
Lys
CTT
[ENA]
¡û
>W1710089992
CTRI01000027
Betaproteobacteria
Thiomonas arsenitoxydans B1 [CTRI]
282624
282699
+
Lys
CTT
[ENA]
¡û
>W1710090026
CTRJ01000012
Betaproteobacteria
Thiomonas arsenitoxydans CB6 [CTRJ]
34270
34195
-
Lys
CTT
[ENA]
¡û
>W1710090075
CTRK01000047
Betaproteobacteria
Thiomonas arsenitoxydans ACO3 [CTRK]
279980
280055
+
Lys
CTT
[ENA]
¡û
>W1710090116
CTRL01000047
Betaproteobacteria
Thiomonas arsenitoxydans ACO7 [CTRL]
279977
280052
+
Lys
CTT
[ENA]
¡û
>W1710090152
CTRM01000027
Betaproteobacteria
Thiomonas sp. CB3 [CTRM]
21348
21273
-
Lys
CTT
[ENA]
¡û
>W1710766792
LIPV01000001
Betaproteobacteria
Thiomonas bhubaneswarensis [LIPV]
23113
23188
+
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK