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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238389 (20 seq.)
>W1711510446
MLAX01000005
Alphaproteobacteria
Alphaproteobacteria bacterium AO1-B [MLAX]
345640
345564
-
Arg
CCT
[ENA]
¡û
>W141200780
AYYG01000052
Alphaproteobacteria
Labrenzia sp. DG1229 [AYYG]
38229
38305
+
Arg
CCT
[ENA]
¡û
>WENV170372264
CETS01078994
[CETS] marine metagenome genome assembly TARA_122_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
3290
3366
+
Arg
CCT
[ENA]
¢þ
>WENV170487968
CEVO01110947
[CEVO] marine metagenome genome assembly TARA_152_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
377
301
-
Arg
CCT
[ENA]
¢þ
>WENV170652475
JRYH01004051
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
6274
6350
+
Arg
CCT
[ENA]
¢þ
>WENV170655122
JTFN01006174
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
12655
12731
+
Arg
CCT
[ENA]
¢þ
>WENV170655408
JTFN01029318
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
159
83
-
Arg
CCT
[ENA]
¢þ
>C181067705
CP022529
Alphaproteobacteria
Labrenzia sp. VG12 [CP022529]
4043056
4043132
+
Arg
CCT
-
¡û
>C181170883
CP028960
Alphaproteobacteria
Methyloceanibacter sp. wino2 [CP028960]
2095170
2095094
-
Arg
CCT
-
¡û
>C191188416
CP041191
Alphaproteobacteria
Labrenzia sp. PHM005 [CP041191]
1274865
1274789
-
Arg
CCT
-
¡û
>W1911143650
NPBC01000008
Alphaproteobacteria
Afifella marina DSM 2698 [NPBC]
172116
172040
-
Arg
CCT
[ENA]
¡û
>C151104307
LN829118
Alphaproteobacteria
Candidatus Filomicrobium marinum strain W [LN829118]
958541
958465
-
Arg
CCT
[Ensembl]
¡û
>C151104353
LN829119
Alphaproteobacteria
Candidatus Filomicrobium marinum Y [LN829119]
958536
958460
-
Arg
CCT
[Ensembl]
¡û
>W1610092113
CXWA01000002
Alphaproteobacteria
Roseibium album alba [CXWA]
414216
414292
+
Arg
CCT
[ENA]
¡û
>W1610092160
CXWC01000002
Alphaproteobacteria
Roseibium album alba [CXWC]
414216
414292
+
Arg
CCT
[ENA]
¡û
>W1610092218
CXWD01000007
Alphaproteobacteria
Roseibium alexandrii [CXWD]
180991
180915
-
Arg
CCT
[ENA]
¡û
>W1710095470
CXWA01000002
Alphaproteobacteria
Roseibium album alba [CXWA]
414216
414292
+
Arg
CCT
[ENA]
¡û
>W1710095517
CXWC01000002
Alphaproteobacteria
Roseibium album alba [CXWC]
414216
414292
+
Arg
CCT
[ENA]
¡û
>W1710095575
CXWD01000007
Alphaproteobacteria
Roseibium alexandrii [CXWD]
180991
180915
-
Arg
CCT
[ENA]
¡û
>W1710508122
FMVW01000002
Alphaproteobacteria
Afifella marina DSM 2698 [FMVW]
280862
280938
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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