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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238413 (96 seq.)
>W1710876707
LMPL01000004
Actinomycetota
Williamsia sp. Leaf354 [LMPL]
286506
286582
+
Leu
TAA
[ENA]
¡û
>W1710994958
LPZN01000044
Actinomycetota
Rhodococcus gordoniae [LPZN]
47372
47296
-
Leu
TAA
[ENA]
¡û
>W1711050326
LRRL01000020
Actinomycetota
Rhodococcus ruber [LRRL]
51767
51843
+
Leu
TAA
[ENA]
¡û
>W1711069506
LSFR01000002
Actinomycetota
Tsukamurella tyrosinosolvens [LSFR]
930240
930164
-
Leu
TAA
[ENA]
¡û
>W1711075012
LSKA01000454
Actinomycetota
Mycolicibacterium mucogenicum [LSKA]
2312
2236
-
Leu
TAA
[ENA]
¡û
>W1711075508
LSKL01000467
Actinomycetota
Mycolicibacterium mucogenicum [LSKL]
75791
75867
+
Leu
TAA
[ENA]
¡û
>W1711186955
LWOR01000015
Actinomycetota
Corynebacterium sp. HMSC29G08 [LWOR]
29744
29820
+
Leu
TAA
[ENA]
¡û
>W131219752
ATYV01000001
Actinomycetota
Corynebacterium sputi DSM 45148 [ATYV]
23498
23574
+
Leu
TAA
[ENA]
¡û
>W1711747309
MUKP01000010
Actinomycetota
Nocardia donostiensis [MUKP]
48407
48331
-
Leu
TAA
[ENA]
¡û
>WENV180006706
FLRY01231327
[FLRY] metagenome; saliva
41
117
+
Leu
TAA
[ENA]
¢þ
>WENV180731308
ODGW01000059
[ODGW] human metagenome; G_DNA_Supragingival plaque
23249
23325
+
Leu
TAA
[ENA]
¢þ
>WENV180732297
ODGY01000109
[ODGY] human metagenome; G_DNA_Supragingival plaque
12792
12868
+
Leu
TAA
[ENA]
¢þ
>WENV180750242
ODHS01000955
[ODHS] human metagenome; G_DNA_Supragingival plaque
5567
5491
-
Leu
TAA
[ENA]
¢þ
>WENV180777374
ODIL01002965
[ODIL] human metagenome; G_DNA_Supragingival plaque
44
120
+
Leu
TAA
[ENA]
¢þ
>WENV180778044
ODIM01000376
[ODIM] human metagenome; G_DNA_Supragingival plaque
12935
13011
+
Leu
TAA
[ENA]
¢þ
>WENV180781662
ODIP01001662
[ODIP] human metagenome; G_DNA_Supragingival plaque
6631
6555
-
Leu
TAA
[ENA]
¢þ
>WENV180787061
ODIS01001022
[ODIS] human metagenome; G_DNA_Supragingival plaque
1134
1058
-
Leu
TAA
[ENA]
¢þ
>WENV180804228
ODJG01001186
[ODJG] human metagenome; G_DNA_Supragingival plaque
83
7
-
Leu
TAA
[ENA]
¢þ
>WENV180814376
ODJO01014876
[ODJO] human metagenome; G_DNA_Supragingival plaque
2140
2064
-
Leu
TAA
[ENA]
¢þ
>WENV180822274
ODJT01000183
[ODJT] human metagenome; G_DNA_Supragingival plaque
23786
23862
+
Leu
TAA
[ENA]
¢þ
>WENV180832156
ODKC01000604
[ODKC] human metagenome; G_DNA_Supragingival plaque
23221
23297
+
Leu
TAA
[ENA]
¢þ
>WENV180833724
ODKD01000145
[ODKD] human metagenome; G_DNA_Supragingival plaque
26454
26378
-
Leu
TAA
[ENA]
¢þ
>WENV180835875
ODKE01017557
[ODKE] human metagenome; G_DNA_Supragingival plaque
6
82
+
Leu
TAA
[ENA]
¢þ
>WENV180844635
ODKN01268436
[ODKN] human metagenome; G_DNA_Supragingival plaque
111
187
+
Leu
TAA
[ENA]
¢þ
>WENV180845448
ODKT01000435
[ODKT] human metagenome; G_DNA_Supragingival plaque
2157
2081
-
Leu
TAA
[ENA]
¢þ
>WENV180887997
ODMN01000011
[ODMN] human metagenome; G_DNA_Supragingival plaque
30398
30474
+
Leu
TAA
[ENA]
¢þ
>WENV180891503
ODMQ01000509
[ODMQ] human metagenome; G_DNA_Supragingival plaque
8698
8622
-
Leu
TAA
[ENA]
¢þ
>WENV180922041
ODTJ01001094
[ODTJ] human metagenome; G_DNA_Supragingival plaque
11989
12065
+
Leu
TAA
[ENA]
¢þ
>WENV180933494
ODTR01000316
[ODTR] human metagenome; G_DNA_Supragingival plaque
12853
12929
+
Leu
TAA
[ENA]
¢þ
>WENV180934532
ODTS01000271
[ODTS] human metagenome; G_DNA_Subgingival plaque
9007
9083
+
Leu
TAA
[ENA]
¢þ
>WENV180943129
ODUC01000002
[ODUC] human metagenome; G_DNA_Supragingival plaque
28571
28647
+
Leu
TAA
[ENA]
¢þ
>WENV180958204
ODUL01001070
[ODUL] human metagenome; G_DNA_Supragingival plaque
117
41
-
Leu
TAA
[ENA]
¢þ
>WENV180980417
ODVE01000133
[ODVE] human metagenome; G_DNA_Supragingival plaque
14110
14186
+
Leu
TAA
[ENA]
¢þ
>WENV180982655
ODVF01000233
[ODVF] human metagenome; G_DNA_Supragingival plaque
35853
35777
-
Leu
TAA
[ENA]
¢þ
>WENV181003033
ODVX01003805
[ODVX] human metagenome; G_DNA_Supragingival plaque
397
321
-
Leu
TAA
[ENA]
¢þ
>WENV181007935
ODWE01001237
[ODWE] human metagenome; G_DNA_Supragingival plaque
11932
12008
+
Leu
TAA
[ENA]
¢þ
>WENV181018991
ODWU01000309
[ODWU] human metagenome; G_DNA_Supragingival plaque
8717
8793
+
Leu
TAA
[ENA]
¢þ
>WENV181049375
ODYD01000088
[ODYD] human metagenome; G_DNA_Supragingival plaque
12194
12270
+
Leu
TAA
[ENA]
¢þ
>WENV181063157
ODYP01000144
[ODYP] human metagenome; G_DNA_Supragingival plaque
23966
24042
+
Leu
TAA
[ENA]
¢þ
>WENV181079799
OEAS01015092
[OEAS] human metagenome; G_DNA_Supragingival plaque
2254
2330
+
Leu
TAA
[ENA]
¢þ
>WENV181082092
OEAT01000002
[OEAT] human metagenome; G_DNA_Supragingival plaque
30116
30192
+
Leu
TAA
[ENA]
¢þ
>WENV181082600
OEAV01000113
[OEAV] human metagenome; G_DNA_Supragingival plaque
23528
23604
+
Leu
TAA
[ENA]
¢þ
>WENV181121135
OEFL01000650
[OEFL] human metagenome; G_DNA_Supragingival plaque
5557
5481
-
Leu
TAA
[ENA]
¢þ
>WENV181123658
OEFQ01000231
[OEFQ] human metagenome; G_DNA_Supragingival plaque
13258
13182
-
Leu
TAA
[ENA]
¢þ
>WENV181137278
OEGJ01001400
[OEGJ] human metagenome; G_DNA_Supragingival plaque
9122
9046
-
Leu
TAA
[ENA]
¢þ
>WENV181142887
OEHM01000002
[OEHM] human metagenome; G_DNA_Supragingival plaque
362445
362369
-
Leu
TAA
[ENA]
¢þ
>WENV181151965
OEIA01000003
[OEIA] human metagenome; G_DNA_Supragingival plaque
27253
27329
+
Leu
TAA
[ENA]
¢þ
>WENV181181607
OEJV01000016
[OEJV] human metagenome; G_DNA_Supragingival plaque
30105
30181
+
Leu
TAA
[ENA]
¢þ
>WENV170552588
CXWK01000515
[CXWK] wastewater metagenome; activated sludge
58304
58380
+
Leu
TAA
[ENA]
¢þ
>WENV170975500
MTKZ01000941
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
278295
278371
+
Leu
TAA
[ENA]
¢þ
>C181035856
CP019066
Actinomycetota
Tsukamurella tyrosinosolvens MH1 [CP019066]
1150204
1150129
-
Leu
TAA
-
¡û
>C181099302
CP024315
Actinomycetota
Rhodococcus ruber P14 [CP024315]
4943491
4943567
+
Leu
TAA
-
¡û
>C181175131
CP029146
Actinomycetota
Rhodococcus ruber SD3 [CP029146]
1329921
1329997
+
Leu
TAA
-
¡û
>C181215436
LS483468
Actinomycetota
Rhodococcus coprophilus NCTC10994 [LS483468]
1765002
1764928
-
Leu
TAA
-
¡û
>C191117130
CP033972
Actinomycetota
Gordonia insulae MMS17-SY073 [CP033972]
1795648
1795722
+
Leu
TAA
-
¡û
>W1910128409
BHVW01000003
Actinomycetota
Mycolicibacterium sp. NCC-Tsukiji NCC Tsukiji [BHVW]
2444
2369
-
Leu
TAA
[ENA]
¡û
>W1910129208
BHYM01000002
Actinomycetota
Rhodococcus wratislaviensis C31-06 [BHYM]
312412
312488
+
Leu
TAA
[ENA]
¡û
>W1910584584
JXXO01000036
Actinomycetota
Rhodococcus ruber OA1 [JXXO]
45700
45776
+
Leu
TAA
[ENA]
¡û
>W1911180218
NQOE01000002
Actinomycetota
Gordonia polyisoprenivorans herm_1 [NQOE]
99049
98973
-
Leu
TAA
[ENA]
¡û
>W1810118414
PHQP01000098
Actinomycetota
Corynebacterium heidelbergense DSM 104638 [PHQP]
6109
6183
+
Leu
TAA
[ENA]
¡û
>W1810330051
PUIO01000004
Actinomycetota
Rhodococcus opacus 04-OD7 [PUIO]
22719
22643
-
Leu
TAA
[ENA]
¡û
>W1810477677
QAOZ01000010
Actinomycetota
Rhodococcus sp. OK611 [QAOZ]
97220
97146
-
Leu
TAA
[ENA]
¡û
>W1810532527
QCYJ01000116
Actinomycetota
Nocardia aurea SYSU K10002 [QCYJ]
102512
102586
+
Leu
TAA
[ENA]
¡û
>W1810623597
QHCV01000104
Actinomycetota
Corynebacterium heidelbergense 647 [QHCV]
971
897
-
Leu
TAA
[ENA]
¡û
>W1810760512
QPKD01000298
Actinomycetota
Tsukamurella tyrosinosolvens PW899 [QPKD]
7083
7008
-
Leu
TAA
[ENA]
¡û
>W1510001813
AZYO01000082
Actinomycetota
Rhodococcus rhodochrous KG-21 [AZYO]
25708
25632
-
Leu
TAA
[ENA]
¡û
>C121006236
CP003119
Actinomycetota
Gordonia polyisoprenivorans VH2 [CP003119]
1702996
1702920
-
Leu
TAA
[Ensembl]
¡û
>W121060037
AJFC01000079
Actinomycetota
Rhodococcus sp. P14 [AJFC]
10628
10552
-
Leu
TAA
[ENA]
¡û
>W121123872
BAEH01000115
Actinomycetota
Gordonia effusa NBRC 100432 [BAEH]
80875
80801
-
Leu
TAA
[ENA]
¡û
>W121124996
BAFR01000168
Actinomycetota
Nocardia araoensis NBRC 100135 [BAFR]
71561
71487
-
Leu
TAA
[ENA]
¡û
>W121125046
BAFS01000237
Actinomycetota
Nocardia asiatica NBRC 100129 [BAFS]
2246
2170
-
Leu
TAA
[ENA]
¡û
>W121125401
BAFZ01000099
Actinomycetota
Nocardia exalbida NBRC 100660 [BAFZ]
171433
171359
-
Leu
TAA
[ENA]
¡û
>W121125721
BAGF01000070
Actinomycetota
Nocardia pneumoniae NBRC 100136 [BAGF]
83335
83261
-
Leu
TAA
[ENA]
¡û
>W121125767
BAGG01000104
Actinomycetota
Nocardia takedensis NBRC 100417 [BAGG]
14034
13958
-
Leu
TAA
[ENA]
¡û
>W1610050173
BBFO01001501
Actinomycetota
Rhodococcus opacus RKJ300 = JCM 13270 [BBFO]
764
688
-
Leu
TAA
[ENA]
¡û
>W1610050789
BBGF01000603
Actinomycetota
Rhodococcus koreensis JCM 10743 = NBRC 100607 [BBGF]
1507
1583
+
Leu
TAA
[ENA]
¡û
>W1610078672
BDBB01000019
Actinomycetota
Nocardia arthritidis NBRC 100137 [BDBB]
161711
161637
-
Leu
TAA
[ENA]
¡û
>W1610080512
BDCK01000027
Actinomycetota
Nocardia niwae NBRC 108934 = DSM 45340 [BDCK]
159447
159521
+
Leu
TAA
[ENA]
¡û
>W1610080849
BDCT01000023
Actinomycetota
Nocardia arizonensis [BDCT]
87210
87284
+
Leu
TAA
[ENA]
¡û
>W1610739053
LMPL01000004
Actinomycetota
Williamsia sp. Leaf354 [LMPL]
286506
286582
+
Leu
TAA
[ENA]
¡û
>W1610849615
LPZN01000044
Actinomycetota
Rhodococcus gordoniae [LPZN]
47372
47296
-
Leu
TAA
[ENA]
¡û
>W1610891455
LRRL01000020
Actinomycetota
Rhodococcus ruber [LRRL]
51767
51843
+
Leu
TAA
[ENA]
¡û
>W1610910034
LSFR01000002
Actinomycetota
Tsukamurella tyrosinosolvens [LSFR]
930240
930164
-
Leu
TAA
[ENA]
¡û
>W1610914317
LSKA01000454
Actinomycetota
Mycolicibacterium mucogenicum [LSKA]
2312
2236
-
Leu
TAA
[ENA]
¡û
>W1610914813
LSKL01000467
Actinomycetota
Mycolicibacterium mucogenicum [LSKL]
75791
75867
+
Leu
TAA
[ENA]
¡û
>W1710046572
BBFO01001501
Actinomycetota
Rhodococcus opacus RKJ300 = JCM 13270 [BBFO]
764
688
-
Leu
TAA
[ENA]
¡û
>W1710047188
BBGF01000603
Actinomycetota
Rhodococcus koreensis JCM 10743 = NBRC 100607 [BBGF]
1507
1583
+
Leu
TAA
[ENA]
¡û
>W1710071969
BCXA01000002
Actinomycetota
Rhodococcus maanshanensis NBRC 100610 [BCXA]
56475
56549
+
Leu
TAA
[ENA]
¡û
>W1710072167
BCXE01000001
Actinomycetota
Rhodococcus ruber NBRC 15591 [BCXE]
76178
76254
+
Leu
TAA
[ENA]
¡û
>W1710072383
BCXI01000016
Actinomycetota
Rhodococcus zopfii NBRC 100606 = JCM 9919 [BCXI]
107367
107443
+
Leu
TAA
[ENA]
¡û
>W1710077231
BDBB01000019
Actinomycetota
Nocardia arthritidis NBRC 100137 [BDBB]
161711
161637
-
Leu
TAA
[ENA]
¡û
>W1710079071
BDCK01000027
Actinomycetota
Nocardia niwae NBRC 108934 = DSM 45340 [BDCK]
159447
159521
+
Leu
TAA
[ENA]
¡û
>W1710079408
BDCT01000023
Actinomycetota
Nocardia arizonensis [BDCT]
87210
87284
+
Leu
TAA
[ENA]
¡û
>W1710534532
FNRX01000002
Actinomycetota
Rhodococcus pyridinivorans [FNRX]
4305885
4305811
-
Leu
TAA
[ENA]
¡û
>W1710535893
FNSV01000005
Actinomycetota
Rhodococcus koreensis [FNSV]
2323829
2323753
-
Leu
TAA
[ENA]
¡û
>W1710544512
FOAW01000006
Actinomycetota
Rhodococcus maanshanensis [FOAW]
110381
110455
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK