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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238476 (126 seq.)
>W1710822188
LKUR01000017
Actinomycetota
Bifidobacterium bifidum [LKUR]
228465
228392
-
Val
CAC
[ENA]
¡û
>W1710822207
LKUR01000020
Actinomycetota
Bifidobacterium bifidum [LKUR]
146454
146529
+
Val
CAC
[ENA]
¡û
>W1711048329
LRPO01000043
Actinomycetota
Bifidobacterium bifidum [LRPO]
78965
78890
-
Val
CAC
[ENA]
¡û
>W1711048338
LRPO01000050
Actinomycetota
Bifidobacterium bifidum [LRPO]
182
255
+
Val
CAC
[ENA]
¡û
>W131218204
ATXM01000001
Actinomycetota
Bifidobacterium minimum DSM 20102 [ATXM]
265836
265763
-
Val
CAC
[ENA]
¡û
>W131227616
AUFH01000005
Actinomycetota
Bifidobacterium subtile DSM 20096 [AUFH]
159809
159882
+
Val
CAC
[ENA]
¡û
>W131227667
AUFI01000010
Actinomycetota
Bifidobacterium thermacidophilum subsp. thermacidophilum DSM 15837 [AUFI]
56099
56172
+
Val
CAC
[ENA]
¡û
>W131043443
AMPL01000009
Actinomycetota
Bifidobacterium bifidum LMG 13195 [AMPL]
50356
50283
-
Val
CAC
[ENA]
¡û
>W131043461
AMPL01000047
Actinomycetota
Bifidobacterium bifidum LMG 13195 [AMPL]
35277
35202
-
Val
CAC
[ENA]
¡û
>WENV180136578
OATN01000103
[OATN] human gut metagenome; faeces
43577
43504
-
Val
CAC
[ENA]
¢þ
>WENV180136735
OATN01000707
[OATN] human gut metagenome; faeces
2186
2113
-
Val
CAC
[ENA]
¢þ
>WENV180152958
OAUR01000051
[OAUR] human gut metagenome; faeces
9151
9078
-
Val
CAC
[ENA]
¢þ
>WENV180152983
OAUR01000098
[OAUR] human gut metagenome; faeces
16446
16519
+
Val
CAC
[ENA]
¢þ
>WENV180176001
OAWC01006607
[OAWC] human gut metagenome; faeces
1615
1542
-
Val
CAC
[ENA]
¢þ
>WENV180452609
OBXK01000051
[OBXK] human gut metagenome; faeces
83326
83399
+
Val
CAC
[ENA]
¢þ
>WENV180452651
OBXK01000087
[OBXK] human gut metagenome; faeces
68295
68222
-
Val
CAC
[ENA]
¢þ
>WENV180465106
OBYE01000792
[OBYE] human gut metagenome; faeces
2172
2245
+
Val
CAC
[ENA]
¢þ
>WENV180473533
OBYR01000380
[OBYR] human gut metagenome; faeces
19329
19402
+
Val
CAC
[ENA]
¢þ
>WENV180492655
OBZX01000052
[OBZX] human gut metagenome; faeces
51019
51092
+
Val
CAC
[ENA]
¢þ
>WENV180492684
OBZX01000107
[OBZX] human gut metagenome; faeces
24232
24159
-
Val
CAC
[ENA]
¢þ
>WENV180492903
OBZY01000006
[OBZY] human gut metagenome; faeces
137601
137674
+
Val
CAC
[ENA]
¢þ
>WENV180605041
OCPS01078088
[OCPS] human gut metagenome; human gut
228
301
+
Val
CAC
[ENA]
¢þ
>WENV181394651
OFRZ01000343
[OFRZ] human gut metagenome; human gut
1868
1941
+
Val
CAC
[ENA]
¢þ
>WENV181803555
OGSD01022890
[OGSD] human gut metagenome; faeces
1742
1669
-
Val
CAC
[ENA]
¢þ
>WENV181903642
OGXX01002025
[OGXX] human gut metagenome; faeces
423
496
+
Val
CAC
[ENA]
¢þ
>W08009118
ABOT01000001
Actinomycetota
Bifidobacterium animalis subsp. lactis HN019 [ABOT]
344758
344833
+
Val
CAC
[ENA]
¡û
>WENV182324356
OHYR01002921
[OHYR] human gut metagenome; feces
910
837
-
Val
CAC
[ENA]
¢þ
>WENV182450001
OILT01008840
[OILT] human gut metagenome; human gut
512
439
-
Val
CAC
[ENA]
¢þ
>WENV182628676
OJKQ01025469
[OJKQ] metagenome; faeces
848
921
+
Val
CAC
[ENA]
¢þ
>WENV182781625
OJSE01007204
[OJSE] human gut metagenome; human gut
2097
2170
+
Val
CAC
[ENA]
¢þ
>WENV182805077
OJVC01000004
[OJVC] human gut metagenome; human gut
76328
76255
-
Val
CAC
[ENA]
¢þ
>WENV182805114
OJVC01000134
[OJVC] human gut metagenome; human gut
1902
1975
+
Val
CAC
[ENA]
¢þ
>WENV182821821
OKBA01002267
[OKBA] human gut metagenome; human gut
98
171
+
Val
CAC
[ENA]
¢þ
>WENV182943819
OKVI01000923
[OKVI] human gut metagenome; human gut
12263
12190
-
Val
CAC
[ENA]
¢þ
>WENV182947832
OKVN01000109
[OKVN] human gut metagenome; human gut
926
999
+
Val
CAC
[ENA]
¢þ
>WENV182947869
OKVN01000193
[OKVN] human gut metagenome; human gut
9086
9159
+
Val
CAC
[ENA]
¢þ
>WENV183100650
OLNG01000186
[OLNG] human gut metagenome; faeces
63968
63895
-
Val
CAC
[ENA]
¢þ
>WENV183171242
OLPC01000006
[OLPC] human gut metagenome; faeces
150370
150296
-
Val
CAC
[ENA]
¢þ
>WENV183314066
OLVR01000640
[OLVR] human gut metagenome; faeces
13815
13888
+
Val
CAC
[ENA]
¢þ
>WENV183523076
ONZS01000026
[ONZS] human gut metagenome; human gut
225
298
+
Val
CAC
[ENA]
¢þ
>WENV183523728
ONZS01002987
[ONZS] human gut metagenome; human gut
3204
3131
-
Val
CAC
[ENA]
¢þ
>WENV183781586
PPYF01198694
[PPYF] human gut metagenome; stool from patient with Crohn's disease
598
671
+
Val
CAC
[ENA]
¢þ
>WENV183782636
PPYF01219408
[PPYF] human gut metagenome; stool from patient with Crohn's disease
1927
2000
+
Val
CAC
[ENA]
¢þ
>WENV183787703
PPYF01346466
[PPYF] human gut metagenome; stool from patient with Crohn's disease
369
442
+
Val
CAC
[ENA]
¢þ
>WENV183790382
PPYF01411280
[PPYF] human gut metagenome; stool from patient with Crohn's disease
7050
6977
-
Val
CAC
[ENA]
¢þ
>WENV183790431
PPYF01411344
[PPYF] human gut metagenome; stool from patient with Crohn's disease
32919
32846
-
Val
CAC
[ENA]
¢þ
>WENV183792902
PPYF01465153
[PPYF] human gut metagenome; stool from patient with Crohn's disease
315
389
+
Val
CAC
[ENA]
¢þ
>WENV170540226
CWGX01000012
[CWGX] human gut metagenome; ENVO:feces
164100
164025
-
Val
CAC
[ENA]
¢þ
>WENV170540241
CWGX01000035
[CWGX] human gut metagenome; ENVO:feces
95742
95669
-
Val
CAC
[ENA]
¢þ
>C181033239
CP018757
Actinomycetota
Bifidobacterium bifidum PRI 1 [CP018757]
145740
145813
+
Val
CAC
-
¡û
>C181033276
CP018757
Actinomycetota
Bifidobacterium bifidum PRI 1 [CP018757]
941170
941097
-
Val
CAC
-
¡û
>C191057559
CP028460
Actinomycetota
Bifidobacterium animalis subsp. animalis CNCM I-4602 [CP028460]
970746
970671
-
Val
CAC
-
¡û
>W141523588
JGYK01000001
Actinomycetota
Bifidobacterium actinocoloniiforme DSM 22766 [JGYK]
493871
493796
-
Val
CAC
[ENA]
¡û
>W141523607
JGYL01000001
Actinomycetota
Bifidobacterium angulatum [JGYL]
270060
270133
+
Val
CAC
[ENA]
¡û
>W141523635
JGYL01000004
Actinomycetota
Bifidobacterium angulatum [JGYL]
491459
491534
+
Val
CAC
[ENA]
¡û
>C191073873
CP031154
Actinomycetota
Bifidobacterium animalis subsp. lactis HN019 [CP031154]
959393
959319
-
Val
CAC
-
¡û
>W141523850
JGYQ01000002
Actinomycetota
Bifidobacterium boum [JGYQ]
52495
52570
+
Val
CAC
[ENA]
¡û
>W141524073
JGYU01000004
Actinomycetota
Bifidobacterium choerinum [JGYU]
70783
70708
-
Val
CAC
[ENA]
¡û
>W141524548
JGZD01000009
Actinomycetota
Bifidobacterium minimum [JGZD]
631580
631507
-
Val
CAC
[ENA]
¡û
>W141524579
JGZE01000011
Actinomycetota
Bifidobacterium mongoliense DSM 21395 [JGZE]
78195
78122
-
Val
CAC
[ENA]
¡û
>W141524677
JGZG01000005
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum [JGZG]
401110
401037
-
Val
CAC
[ENA]
¡û
>W141525202
JGZR01000002
Actinomycetota
Bifidobacterium subtile [JGZR]
159838
159911
+
Val
CAC
[ENA]
¡û
>W141525254
JGZS01000003
Actinomycetota
Bifidobacterium porcinum subsp. porcinum [JGZS]
615074
615147
+
Val
CAC
[ENA]
¡û
>W141525317
JGZT01000008
Actinomycetota
Bifidobacterium thermacidophilum subsp. thermacidophilum [JGZT]
150872
150945
+
Val
CAC
[ENA]
¡û
>W141525384
JGZV01000002
Actinomycetota
Bifidobacterium thermophilum [JGZV]
52927
53002
+
Val
CAC
[ENA]
¡û
>W141559112
JHWM01000003
Actinomycetota
Bifidobacterium thermophilum DSM 20212 [JHWM]
166702
166629
-
Val
CAC
[ENA]
¡û
>W141559215
JHWO01000004
Actinomycetota
Bifidobacterium boum DSM 20432 [JHWO]
52273
52348
+
Val
CAC
[ENA]
¡û
>W1910828966
MWWS01000002
Actinomycetota
Bombiscardovia coagulans DSM 22924 [MWWS]
73806
73733
-
Val
CAC
[ENA]
¡û
>W1911079591
NMYC01000001
Actinomycetota
Bifidobacterium anseris 72 [NMYC]
468093
468020
-
Val
CAC
[ENA]
¡û
>W1911722382
QRAJ01000002
Actinomycetota
Bifidobacterium mongoliense BMONG18 [QRAJ]
202798
202871
+
Val
CAC
[ENA]
¡û
>W1911768187
QXGI01000001
Actinomycetota
Bifidobacterium castoris 2020B [QXGI]
356506
356432
-
Val
CAC
[ENA]
¡û
>W1810049030
PCGX01000009
Actinomycetota
Bifidobacterium thermophilum 1543B [PCGX]
73285
73212
-
Val
CAC
[ENA]
¡û
>W1810049072
PCGY01000012
Actinomycetota
Bifidobacterium thermophilum 1542B [PCGY]
245892
245819
-
Val
CAC
[ENA]
¡û
>W1810052416
PDCH01000007
Actinomycetota
Bifidobacterium xylocopae XV2 [PDCH]
40523
40450
-
Val
CAC
[ENA]
¡û
>W1810069417
PEBI01000002
Actinomycetota
Bifidobacterium primatium TRE 1 [PEBI]
17900
17973
+
Val
CAC
[ENA]
¡û
>W1810069432
PEBI01000003
Actinomycetota
Bifidobacterium primatium TRE 1 [PEBI]
31560
31635
+
Val
CAC
[ENA]
¡û
>W1810541520
QDIJ01000001
Actinomycetota
Bifidobacterium bifidum DS30_23 [QDIJ]
237788
237715
-
Val
CAC
[ENA]
¡û
>W1810541539
QDIJ01000004
Actinomycetota
Bifidobacterium bifidum DS30_23 [QDIJ]
100634
100561
-
Val
CAC
[ENA]
¡û
>W1810541615
QDIL01000001
Actinomycetota
Bifidobacterium animalis subsp. lactis DS27_2 [QDIL]
344886
344960
+
Val
CAC
[ENA]
¡û
>W1810542322
QDIZ01000006
Actinomycetota
Bifidobacterium animalis DS20_2 [QDIZ]
344984
345058
+
Val
CAC
[ENA]
¡û
>W1810586664
QFFN01000001
Actinomycetota
Bifidobacterium catulorum MRM 8.19 [QFFN]
128820
128745
-
Val
CAC
[ENA]
¡û
>W1810586683
QFFN01000007
Actinomycetota
Bifidobacterium catulorum MRM 8.19 [QFFN]
64016
63943
-
Val
CAC
[ENA]
¡û
>W1810793146
QRJN01000002
Actinomycetota
Bifidobacterium bifidum AM18-11 [QRJN]
197897
197824
-
Val
CAC
[ENA]
¡û
>W1810793154
QRJN01000003
Actinomycetota
Bifidobacterium bifidum AM18-11 [QRJN]
252147
252220
+
Val
CAC
[ENA]
¡û
>W1810832829
QSPI01000003
Actinomycetota
Bifidobacterium bifidum TM06-10 [QSPI]
31264
31337
+
Val
CAC
[ENA]
¡û
>W1810836950
QSSE01000002
Actinomycetota
Bifidobacterium bifidum TF06-13 [QSSE]
389750
389823
+
Val
CAC
[ENA]
¡û
>W1810836960
QSSE01000003
Actinomycetota
Bifidobacterium bifidum TF06-13 [QSSE]
201951
202024
+
Val
CAC
[ENA]
¡û
>W1810837154
QSSI01000001
Actinomycetota
Bifidobacterium bifidum TF05-39 [QSSI]
395530
395603
+
Val
CAC
[ENA]
¡û
>W1810837165
QSSI01000001
Actinomycetota
Bifidobacterium bifidum TF05-39 [QSSI]
1184762
1184689
-
Val
CAC
[ENA]
¡û
>C151024257
CP007457
Actinomycetota
Bifidobacterium pseudolongum PV8-2 [CP007457]
1016208
1016135
-
Val
CAC
[Ensembl]
¡û
>C151086308
CP011786
Actinomycetota
Bifidobacterium actinocoloniiforme DSM 22766 [CP011786]
552399
552324
-
Val
CAC
-
¡û
>C10101319
CP001853
Actinomycetota
Bifidobacterium animalis subsp. lactis BB-12 [CP001853]
1594486
1594411
-
Val
CAC
[Ensembl]
¡û
>C10101370
CP001892
Actinomycetota
Bifidobacterium animalis subsp. lactis V9 [CP001892]
959526
959451
-
Val
CAC
[Ensembl]
¡û
>W1511566677
LAHN01000001
Actinomycetota
Bifidobacterium angulatum GT102 [LAHN]
246515
246440
-
Val
CAC
[ENA]
¡û
>W1511566697
LAHN01000003
Actinomycetota
Bifidobacterium angulatum GT102 [LAHN]
251924
251851
-
Val
CAC
[ENA]
¡û
>C121001419
CP001361
Actinomycetota
Bifidobacterium bifidum BGN4 [CP001361]
346140
346213
+
Val
CAC
[Ensembl]
¡û
>C121001448
CP001361
Actinomycetota
Bifidobacterium bifidum BGN4 [CP001361]
1138093
1138018
-
Val
CAC
[Ensembl]
¡û
>C121013669
CP003497
Actinomycetota
Bifidobacterium animalis subsp. lactis B420 [CP003497]
959521
959446
-
Val
CAC
[Ensembl]
¡û
>C161087457
CP015407
Actinomycetota
Bifidobacterium animalis subsp. animalis YL2 [CP015407]
1438058
1437983
-
Val
CAC
[Ensembl]
¡û
>W121031686
AHGW01000003
Actinomycetota
Bifidobacterium animalis subsp. lactis BS 01 [AHGW]
186441
186366
-
Val
CAC
[ENA]
¡û
>C131013365
CP004346
Actinomycetota
Bifidobacterium thermophilum RBL67 [CP004346]
1312383
1312310
-
Val
CAC
[Ensembl]
¡û
>W1610518677
JDTO01000005
Actinomycetota
Bifidobacterium thermacidophilum subsp. thermacidophilum DSM 15837 [JDTO]
56035
56108
+
Val
CAC
[ENA]
¡û
>W1610518755
JDTQ01000004
Actinomycetota
Bifidobacterium porcinum subsp. porcinum DSM 17755 [JDTQ]
450140
450067
-
Val
CAC
[ENA]
¡û
>W1610519107
JDTX01000015
Actinomycetota
Bifidobacterium subtile DSM 20096 [JDTX]
30941
30868
-
Val
CAC
[ENA]
¡û
>W1610519231
JDUA01000006
Actinomycetota
Bifidobacterium minimum DSM 20102 [JDUA]
59349
59276
-
Val
CAC
[ENA]
¡û
>W1610519268
JDUB01000005
Actinomycetota
Bifidobacterium thermophilum DSM 20210 [JDUB]
54968
55041
+
Val
CAC
[ENA]
¡û
>W1610519552
JDUH01000007
Actinomycetota
Bifidobacterium boum DSM 20432 [JDUH]
163480
163405
-
Val
CAC
[ENA]
¡û
>W1610519873
JDUO01000003
Actinomycetota
Bifidobacterium mongoliense DSM 21395 [JDUO]
234192
234119
-
Val
CAC
[ENA]
¡û
>W1610520006
JDUR01000017
Actinomycetota
Bifidobacterium actinocoloniiforme DSM 22766 [JDUR]
36773
36698
-
Val
CAC
[ENA]
¡û
>W1610686247
LKUR01000017
Actinomycetota
Bifidobacterium bifidum [LKUR]
228465
228392
-
Val
CAC
[ENA]
¡û
>W1610686266
LKUR01000020
Actinomycetota
Bifidobacterium bifidum [LKUR]
146454
146529
+
Val
CAC
[ENA]
¡û
>W1710072498
BCXK01000004
Actinomycetota
Bifidobacterium bifidum [BCXK]
108086
108013
-
Val
CAC
[ENA]
¡û
>W1710072540
BCXK01000026
Actinomycetota
Bifidobacterium bifidum [BCXK]
44785
44860
+
Val
CAC
[ENA]
¡û
>W1710582439
FQTX01000002
Actinomycetota
Bifidobacterium merycicum DSM 6492 [FQTX]
1294
1221
-
Val
CAC
[ENA]
¡û
>W1710614113
JDTM01000009
Actinomycetota
Bifidobacterium pullorum DSM 6531 = LMG 14934 [JDTM]
9840
9913
+
Val
CAC
[ENA]
¡û
>W1710614126
JDTM01000067
Actinomycetota
Bifidobacterium pullorum DSM 6531 = LMG 14934 [JDTM]
67
140
+
Val
CAC
[ENA]
¡û
>W1710614197
JDTO01000005
Actinomycetota
Bifidobacterium thermacidophilum subsp. thermacidophilum DSM 15837 [JDTO]
56035
56108
+
Val
CAC
[ENA]
¡û
>W1710614275
JDTQ01000004
Actinomycetota
Bifidobacterium porcinum subsp. porcinum DSM 17755 [JDTQ]
450140
450067
-
Val
CAC
[ENA]
¡û
>W1710614562
JDTX01000015
Actinomycetota
Bifidobacterium subtile DSM 20096 [JDTX]
30941
30868
-
Val
CAC
[ENA]
¡û
>W1710614667
JDTZ01000016
Actinomycetota
Bifidobacterium pseudolongum subsp. pseudolongum DSM 20099 [JDTZ]
63
136
+
Val
CAC
[ENA]
¡û
>W1710614686
JDUA01000006
Actinomycetota
Bifidobacterium minimum DSM 20102 [JDUA]
59349
59276
-
Val
CAC
[ENA]
¡û
>W1710614723
JDUB01000005
Actinomycetota
Bifidobacterium thermophilum DSM 20210 [JDUB]
54968
55041
+
Val
CAC
[ENA]
¡û
>W1710615007
JDUH01000007
Actinomycetota
Bifidobacterium boum DSM 20432 [JDUH]
163480
163405
-
Val
CAC
[ENA]
¡û
>W1710615039
JDUI01000007
Actinomycetota
Bifidobacterium pullorum DSM 20433 [JDUI]
161161
161234
+
Val
CAC
[ENA]
¡û
>W1710615286
JDUO01000003
Actinomycetota
Bifidobacterium mongoliense DSM 21395 [JDUO]
234192
234119
-
Val
CAC
[ENA]
¡û
>W1710615419
JDUR01000017
Actinomycetota
Bifidobacterium actinocoloniiforme DSM 22766 [JDUR]
36773
36698
-
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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