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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238480 (73 seq.)
>W1710777599
LJBS01000041
Bacillota
Pediococcus acidilactici [LJBS]
24215
24141
-
Thr
CGT
[ENA]
¡û
>W1710915767
LNUM01000007
Bacillota
Pediococcus acidilactici [LNUM]
95597
95523
-
Thr
CGT
[ENA]
¡û
>W1711005321
LQNM01000025
Bacillota
Pediococcus pentosaceus [LQNM]
13828
13754
-
Thr
CGT
[ENA]
¡û
>W1711005580
LQNQ01000011
Bacillota
Pediococcus acidilactici [LQNQ]
20502
20428
-
Thr
CGT
[ENA]
¡û
>W1711005643
LQNR01000054
Bacillota
Pediococcus acidilactici [LQNR]
5902
5828
-
Thr
CGT
[ENA]
¡û
>W1711025282
LRBW01000018
Bacillota
Pediococcus acidilactici [LRBW]
20501
20427
-
Thr
CGT
[ENA]
¡û
>W1711068923
LSFE01000001
Bacillota
Pediococcus pentosaceus [LSFE]
289930
289856
-
Thr
CGT
[ENA]
¡û
>W131146226
AQGT01000001
Bacillota
Pediococcus acidilactici D3 [AQGT]
7197
7123
-
Thr
CGT
[ENA]
¡û
>W1711258416
LYUJ01000019
Bacillota
Pediococcus acidilactici [LYUJ]
293
367
+
Thr
CGT
[ENA]
¡û
>W1711352489
MDDF01000140
Bacillota
Pediococcus acidilactici [MDDF]
16720
16646
-
Thr
CGT
[ENA]
¡û
>W131239209
BANK01000035
Bacillota
Pediococcus acidilactici NGRI 0510Q [BANK]
59
133
+
Thr
CGT
[ENA]
¡û
>C171036805
CP015206
Bacillota
Pediococcus acidilactici ZPA017 [CP015206]
1028040
1027966
-
Thr
CGT
-
¡û
>C171083287
CP018763
Bacillota
Pediococcus acidilactici BCC1 [CP018763]
1734398
1734324
-
Thr
CGT
-
¡û
>C171119446
CP021474
Bacillota
Pediococcus pentosaceus SRCM100892 [CP021474]
328909
328983
+
Thr
CGT
-
¡û
>C171119594
CP021484
Bacillota
Pediococcus acidilactici SRCM100424 [CP021484]
1662782
1662708
-
Thr
CGT
-
¡û
>C171119651
CP021487
Bacillota
Pediococcus acidilactici SRCM100313 [CP021487]
1662653
1662579
-
Thr
CGT
-
¡û
>C171120454
CP021529
Bacillota
Pediococcus acidilactici SRCM101189 [CP021529]
1662792
1662718
-
Thr
CGT
-
¡û
>C171126464
CP021927
Bacillota
Pediococcus pentosaceus SRCM100194 [CP021927]
321348
321422
+
Thr
CGT
-
¡û
>C017434
CP000422
Bacillota
Pediococcus pentosaceus ATCC 25745 [CP000422]
1502727
1502655
-
Thr
CGT
[Ensembl]
¡û
>WENV180349193
OBLO01027338
[OBLO] metagenome; feces
1758
1684
-
Thr
CGT
[ENA]
¢þ
>W141241995
CAHU01000028
Bacillota
Pediococcus pentosaceus IE-3 [CAHU]
46
120
+
Thr
CGT
[ENA]
¡û
>W141280117
JAGU01000001
Bacillota
Pediococcus acidilactici AGR20 [JAGU]
1375833
1375907
+
Thr
CGT
[ENA]
¡û
>WENV183238294
OLQY01019796
[OLQY] human gut metagenome; faeces
609
683
+
Thr
CGT
[ENA]
¢þ
>WENV183762520
PPYE01276328
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
138
212
+
Thr
CGT
[ENA]
¢þ
>WENV183769028
PPYE01412468
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
206
280
+
Thr
CGT
[ENA]
¢þ
>WENV183789039
PPYF01373844
[PPYF] human gut metagenome; stool from patient with Crohn's disease
2456
2382
-
Thr
CGT
[ENA]
¢þ
>WENV183790260
PPYF01411155
[PPYF] human gut metagenome; stool from patient with Crohn's disease
295850
295776
-
Thr
CGT
[ENA]
¢þ
>WENV183792352
PPYF01459024
[PPYF] human gut metagenome; stool from patient with Crohn's disease
138
212
+
Thr
CGT
[ENA]
¢þ
>W141402973
JDVW01000008
Bacillota
Pediococcus pentosaceus CGMCC 7049 [JDVW]
295877
295803
-
Thr
CGT
[ENA]
¡û
>WENV170659504
JXWR01007608
[JXWR] soil metagenome; rice field; ambient CO2
148
222
+
Thr
CGT
[ENA]
¢þ
>C181042793
CP020018
Bacillota
Pediococcus pentosaceus KCCM 40703 [CP020018]
757166
757092
-
Thr
CGT
-
¡û
>W09101474
AAEV01000012
Bacillota
Pediococcus pentosaceus ATCC 25745 [AAEV]
38454
38380
-
Thr
CGT
[ENA]
¡û
>C191023245
CP023008
Bacillota
Pediococcus pentosaceus SS1-3 [CP023008]
1429570
1429496
-
Thr
CGT
-
¡û
>C191035352
CP025471
Bacillota
Pediococcus acidilactici PB22 [CP025471]
1599569
1599495
-
Thr
CGT
-
¡û
>C191106178
CP033438
Bacillota
Pediococcus acidilactici ATCC 8042 [CP033438]
466594
466668
+
Thr
CGT
-
¡û
>C191135590
CP035151
Bacillota
Pediococcus acidilactici SRCM103367 [CP035151]
1507598
1507524
-
Thr
CGT
-
¡û
>C191135649
CP035154
Bacillota
Pediococcus acidilactici SRCM103387 [CP035154]
1624465
1624391
-
Thr
CGT
-
¡û
>C191137780
CP035266
Bacillota
Pediococcus acidilactici SRCM103444 [CP035266]
352663
352737
+
Thr
CGT
-
¡û
>W1910181661
BJMF01000003
Bacillota
Pediococcus acidilactici NBRC 12231 [BJMF]
212337
212263
-
Thr
CGT
[ENA]
¡û
>W1910373921
FUHV01000003
Bacillota
Pediococcus acidilactici S7 [FUHV]
90245
90171
-
Thr
CGT
[ENA]
¡û
>C141009503
CP006854
Bacillota
Pediococcus pentosaceus SL4 [CP006854]
1467072
1466998
-
Thr
CGT
[Ensembl]
¡û
>W1911631285
PUFB01000016
Bacillota
Pediococcus pentosaceus ATCC 33316 [PUFB]
283
357
+
Thr
CGT
[ENA]
¡û
>W1911696867
QNGC01000024
Bacillota
Pediococcus acidilactici GS1 [QNGC]
174472
174398
-
Thr
CGT
[ENA]
¡û
>W1911798495
QYRQ01000037
Bacillota
Pediococcus acidilactici WT [QYRQ]
174500
174426
-
Thr
CGT
[ENA]
¡û
>W1810000830
BEWQ01000004
Bacillota
Pediococcus pentosaceus NBRC 3182 [BEWQ]
48
122
+
Thr
CGT
[ENA]
¡û
>W1810049825
PCYQ01000002
Bacillota
Pediococcus acidilactici UMNPBX20 [PCYQ]
195
269
+
Thr
CGT
[ENA]
¡û
>W10105141
ACXB01000014
Bacillota
Pediococcus acidilactici 7_4 [ACXB]
315297
315223
-
Thr
CGT
[ENA]
¡û
>W10127362
AEEG01000003
Bacillota
Pediococcus acidilactici DSM 20284 [AEEG]
313411
313337
-
Thr
CGT
[ENA]
¡û
>W11107461
ACXB01000014
Bacillota
Pediococcus acidilactici 7_4 [ACXB]
315297
315223
-
Thr
CGT
[ENA]
¡û
>W11134850
AEEG01000003
Bacillota
Pediococcus acidilactici DSM 20284 [AEEG]
313411
313337
-
Thr
CGT
[ENA]
¡û
>C161092313
CP015918
Bacillota
Pediococcus pentosaceus wikim20 [CP015918]
569444
569518
+
Thr
CGT
[Ensembl]
¡û
>W121011505
AGKB01000010
Bacillota
Pediococcus acidilactici MA18/5M [AGKB]
315722
315648
-
Thr
CGT
[ENA]
¡û
>W1610057807
BBZC01000019
Bacillota
Pediococcus pentosaceus [BBZC]
92740
92666
-
Thr
CGT
[ENA]
¡û
>W1610527736
JQAQ01000003
Bacillota
Pediococcus acidilactici [JQAQ]
169
243
+
Thr
CGT
[ENA]
¡û
>W1610528404
JQBF01000003
Bacillota
Pediococcus pentosaceus [JQBF]
158
232
+
Thr
CGT
[ENA]
¡û
>W1610529251
JQBX01000036
Bacillota
Pediococcus stilesii [JQBX]
73
147
+
Thr
CGT
[ENA]
¡û
>W1610529458
JQCC01000003
Bacillota
Pediococcus acidilactici [JQCC]
169
243
+
Thr
CGT
[ENA]
¡û
>W1610530177
JQCQ01000058
Bacillota
Pediococcus argentinicus [JQCQ]
51
126
+
Thr
CGT
[ENA]
¡û
>W1610641785
LJBS01000041
Bacillota
Pediococcus acidilactici [LJBS]
24215
24141
-
Thr
CGT
[ENA]
¡û
>W1610650101
LJIU01000008
Bacillota
Pediococcus pentosaceus wikim20 [LJIU]
152522
152448
-
Thr
CGT
[ENA]
¡û
>W1610774006
LNUM01000007
Bacillota
Pediococcus acidilactici [LNUM]
95597
95523
-
Thr
CGT
[ENA]
¡û
>W1610855971
LQNM01000025
Bacillota
Pediococcus pentosaceus [LQNM]
13828
13754
-
Thr
CGT
[ENA]
¡û
>W1610856230
LQNQ01000011
Bacillota
Pediococcus acidilactici [LQNQ]
20502
20428
-
Thr
CGT
[ENA]
¡û
>W1610856293
LQNR01000054
Bacillota
Pediococcus acidilactici [LQNR]
5902
5828
-
Thr
CGT
[ENA]
¡û
>W1610873394
LRBW01000018
Bacillota
Pediococcus acidilactici [LRBW]
20501
20427
-
Thr
CGT
[ENA]
¡û
>W1610909493
LSFE01000001
Bacillota
Pediococcus pentosaceus [LSFE]
289930
289856
-
Thr
CGT
[ENA]
¡û
>W1611020888
LYUJ01000019
Bacillota
Pediococcus acidilactici [LYUJ]
293
367
+
Thr
CGT
[ENA]
¡û
>W1710054506
BBZC01000019
Bacillota
Pediococcus pentosaceus [BBZC]
92740
92666
-
Thr
CGT
[ENA]
¡û
>W1710629367
JQAQ01000003
Bacillota
Pediococcus acidilactici [JQAQ]
169
243
+
Thr
CGT
[ENA]
¡û
>W1710629994
JQBF01000003
Bacillota
Pediococcus pentosaceus [JQBF]
158
232
+
Thr
CGT
[ENA]
¡û
>W1710630841
JQBX01000036
Bacillota
Pediococcus stilesii [JQBX]
73
147
+
Thr
CGT
[ENA]
¡û
>W1710631048
JQCC01000003
Bacillota
Pediococcus acidilactici [JQCC]
169
243
+
Thr
CGT
[ENA]
¡û
>W1710631767
JQCQ01000058
Bacillota
Pediococcus argentinicus [JQCQ]
51
126
+
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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