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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238481 (81 seq.)
>W1710777597
LJBS01000029
Bacillota
Pediococcus acidilactici [LJBS]
15149
15073
-
Gln
CTG
[ENA]
¡û
>W1710915780
LNUM01000011
Bacillota
Pediococcus acidilactici [LNUM]
15862
15938
+
Gln
CTG
[ENA]
¡û
>W1711005319
LQNM01000019
Bacillota
Pediococcus pentosaceus [LQNM]
12005
12080
+
Gln
CTG
[ENA]
¡û
>W1711005571
LQNQ01000009
Bacillota
Pediococcus acidilactici [LQNQ]
120378
120454
+
Gln
CTG
[ENA]
¡û
>W1711005633
LQNR01000045
Bacillota
Pediococcus acidilactici [LQNR]
315
391
+
Gln
CTG
[ENA]
¡û
>W1711025274
LRBW01000016
Bacillota
Pediococcus acidilactici [LRBW]
120336
120412
+
Gln
CTG
[ENA]
¡û
>W1711068921
LSFE01000001
Bacillota
Pediococcus pentosaceus [LSFE]
115224
115299
+
Gln
CTG
[ENA]
¡û
>W131146234
AQGT01000003
Bacillota
Pediococcus acidilactici D3 [AQGT]
183663
183739
+
Gln
CTG
[ENA]
¡û
>W1711166894
LVVN01000031
Bacillota
Weissella halotolerans [LVVN]
5924
5999
+
Gln
CTG
[ENA]
¡û
>W1711258428
LYUJ01000019
Bacillota
Pediococcus acidilactici [LYUJ]
195878
195802
-
Gln
CTG
[ENA]
¡û
>W1711352481
MDDF01000118
Bacillota
Pediococcus acidilactici [MDDF]
957
1033
+
Gln
CTG
[ENA]
¡û
>W131239168
BANK01000002
Bacillota
Pediococcus acidilactici NGRI 0510Q [BANK]
84473
84397
-
Gln
CTG
[ENA]
¡û
>W1711585793
MOAB01000001
Bacillota
Pediococcus acidilactici [MOAB]
216633
216557
-
Gln
CTG
[ENA]
¡û
>C171034286
CP014933
Bacillota
Pediococcus claussenii TMW 2.53 [CP014933]
1497306
1497378
+
Gln
CTG
-
¡û
>C171034343
CP014936
Bacillota
Pediococcus claussenii TMW 2.54 [CP014936]
1495100
1495172
+
Gln
CTG
-
¡û
>C171036772
CP015206
Bacillota
Pediococcus acidilactici ZPA017 [CP015206]
758454
758530
+
Gln
CTG
-
¡û
>C171083282
CP018763
Bacillota
Pediococcus acidilactici BCC1 [CP018763]
1485425
1485501
+
Gln
CTG
-
¡û
>C171119497
CP021474
Bacillota
Pediococcus pentosaceus SRCM100892 [CP021474]
503573
503498
-
Gln
CTG
-
¡û
>C171119589
CP021484
Bacillota
Pediococcus acidilactici SRCM100424 [CP021484]
1467198
1467274
+
Gln
CTG
-
¡û
>C171119646
CP021487
Bacillota
Pediococcus acidilactici SRCM100313 [CP021487]
1467084
1467160
+
Gln
CTG
-
¡û
>C171120449
CP021529
Bacillota
Pediococcus acidilactici SRCM101189 [CP021529]
1467207
1467283
+
Gln
CTG
-
¡û
>C171126514
CP021927
Bacillota
Pediococcus pentosaceus SRCM100194 [CP021927]
492928
492853
-
Gln
CTG
-
¡û
>C017429
CP000422
Bacillota
Pediococcus pentosaceus ATCC 25745 [CP000422]
1330798
1330873
+
Gln
CTG
[Ensembl]
¡û
>WENV180279518
OBHX01044491
[OBHX] metagenome; feces
980
1055
+
Gln
CTG
[ENA]
¢þ
>WENV180333834
OBLF01002334
[OBLF] metagenome; feces
5717
5789
+
Gln
CTG
[ENA]
¢þ
>W141241969
CAHU01000007
Bacillota
Pediococcus pentosaceus IE-3 [CAHU]
14840
14765
-
Gln
CTG
[ENA]
¡û
>W141280140
JAGU01000001
Bacillota
Pediococcus acidilactici AGR20 [JAGU]
1574737
1574661
-
Gln
CTG
[ENA]
¡û
>WENV183762493
PPYE01276137
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
9645
9570
-
Gln
CTG
[ENA]
¢þ
>WENV183769041
PPYE01412605
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
358
286
-
Gln
CTG
[ENA]
¢þ
>WENV183790258
PPYF01411155
[PPYF] human gut metagenome; stool from patient with Crohn's disease
115223
115295
+
Gln
CTG
[ENA]
¢þ
>WENV183792324
PPYF01458470
[PPYF] human gut metagenome; stool from patient with Crohn's disease
5135
5210
+
Gln
CTG
[ENA]
¢þ
>W141402969
JDVW01000008
Bacillota
Pediococcus pentosaceus CGMCC 7049 [JDVW]
115213
115288
+
Gln
CTG
[ENA]
¡û
>WENV170659159
JXWR01000854
[JXWR] soil metagenome; rice field; ambient CO2
40215
40290
+
Gln
CTG
[ENA]
¢þ
>C181042762
CP020018
Bacillota
Pediococcus pentosaceus KCCM 40703 [CP020018]
581021
581093
+
Gln
CTG
-
¡û
>C191023240
CP023008
Bacillota
Pediococcus pentosaceus SS1-3 [CP023008]
1251438
1251510
+
Gln
CTG
-
¡û
>C191035347
CP025471
Bacillota
Pediococcus acidilactici PB22 [CP025471]
1406536
1406611
+
Gln
CTG
-
¡û
>C191106229
CP033438
Bacillota
Pediococcus acidilactici ATCC 8042 [CP033438]
660094
660019
-
Gln
CTG
-
¡û
>C191135585
CP035151
Bacillota
Pediococcus acidilactici SRCM103367 [CP035151]
1306906
1306981
+
Gln
CTG
-
¡û
>C191135642
CP035154
Bacillota
Pediococcus acidilactici SRCM103387 [CP035154]
1430103
1430178
+
Gln
CTG
-
¡û
>C191137831
CP035266
Bacillota
Pediococcus acidilactici SRCM103444 [CP035266]
544805
544730
-
Gln
CTG
-
¡û
>W09101451
AAEV01000001
Bacillota
Pediococcus pentosaceus ATCC 25745 [AAEV]
115739
115814
+
Gln
CTG
[ENA]
¡û
>W1910181660
BJMF01000003
Bacillota
Pediococcus acidilactici NBRC 12231 [BJMF]
15679
15754
+
Gln
CTG
[ENA]
¡û
>W1910373926
FUHV01000006
Bacillota
Pediococcus acidilactici S7 [FUHV]
118829
118904
+
Gln
CTG
[ENA]
¡û
>C141009500
CP006854
Bacillota
Pediococcus pentosaceus SL4 [CP006854]
1294768
1294843
+
Gln
CTG
[Ensembl]
¡û
>W1911631296
PUFB01000016
Bacillota
Pediococcus pentosaceus ATCC 33316 [PUFB]
180911
180839
-
Gln
CTG
[ENA]
¡û
>W1911696865
QNGC01000017
Bacillota
Pediococcus acidilactici GS1 [QNGC]
19138
19063
-
Gln
CTG
[ENA]
¡û
>W1911798458
QYRQ01000011
Bacillota
Pediococcus acidilactici WT [QYRQ]
86219
86294
+
Gln
CTG
[ENA]
¡û
>W1810000842
BEWQ01000005
Bacillota
Pediococcus pentosaceus NBRC 3182 [BEWQ]
136704
136632
-
Gln
CTG
[ENA]
¡û
>W1810049837
PCYQ01000002
Bacillota
Pediococcus acidilactici UMNPBX20 [PCYQ]
232490
232415
-
Gln
CTG
[ENA]
¡û
>W10105140
ACXB01000014
Bacillota
Pediococcus acidilactici 7_4 [ACXB]
120265
120341
+
Gln
CTG
[ENA]
¡û
>W10127360
AEEG01000003
Bacillota
Pediococcus acidilactici DSM 20284 [AEEG]
120376
120452
+
Gln
CTG
[ENA]
¡û
>W11107460
ACXB01000014
Bacillota
Pediococcus acidilactici 7_4 [ACXB]
120265
120341
+
Gln
CTG
[ENA]
¡û
>W11134848
AEEG01000003
Bacillota
Pediococcus acidilactici DSM 20284 [AEEG]
120376
120452
+
Gln
CTG
[ENA]
¡û
>C121006603
CP003137
Bacillota
Pediococcus claussenii ATCC BAA-344 [CP003137]
647352
647424
+
Gln
CTG
[Ensembl]
¡û
>C161092362
CP015918
Bacillota
Pediococcus pentosaceus wikim20 [CP015918]
741025
740950
-
Gln
CTG
[Ensembl]
¡û
>W121011500
AGKB01000010
Bacillota
Pediococcus acidilactici MA18/5M [AGKB]
122924
123000
+
Gln
CTG
[ENA]
¡û
>W1610057800
BBZC01000018
Bacillota
Pediococcus pentosaceus [BBZC]
94757
94832
+
Gln
CTG
[ENA]
¡û
>W1610527748
JQAQ01000003
Bacillota
Pediococcus acidilactici [JQAQ]
193204
193128
-
Gln
CTG
[ENA]
¡û
>W1610528253
JQBB01000007
Bacillota
Pediococcus claussenii [JQBB]
126514
126442
-
Gln
CTG
[ENA]
¡û
>W1610528415
JQBF01000003
Bacillota
Pediococcus pentosaceus [JQBF]
180786
180711
-
Gln
CTG
[ENA]
¡û
>W1610529222
JQBX01000006
Bacillota
Pediococcus stilesii [JQBX]
33197
33123
-
Gln
CTG
[ENA]
¡û
>W1610529470
JQCC01000003
Bacillota
Pediococcus acidilactici [JQCC]
198760
198684
-
Gln
CTG
[ENA]
¡û
>W1610530155
JQCQ01000020
Bacillota
Pediococcus argentinicus [JQCQ]
11030
11105
+
Gln
CTG
[ENA]
¡û
>W1610641783
LJBS01000029
Bacillota
Pediococcus acidilactici [LJBS]
15149
15073
-
Gln
CTG
[ENA]
¡û
>W1610650100
LJIU01000007
Bacillota
Pediococcus pentosaceus wikim20 [LJIU]
115106
115181
+
Gln
CTG
[ENA]
¡û
>W1610774019
LNUM01000011
Bacillota
Pediococcus acidilactici [LNUM]
15862
15938
+
Gln
CTG
[ENA]
¡û
>W1610855969
LQNM01000019
Bacillota
Pediococcus pentosaceus [LQNM]
12005
12080
+
Gln
CTG
[ENA]
¡û
>W1610856221
LQNQ01000009
Bacillota
Pediococcus acidilactici [LQNQ]
120378
120454
+
Gln
CTG
[ENA]
¡û
>W1610856283
LQNR01000045
Bacillota
Pediococcus acidilactici [LQNR]
315
391
+
Gln
CTG
[ENA]
¡û
>W1610873386
LRBW01000016
Bacillota
Pediococcus acidilactici [LRBW]
120336
120412
+
Gln
CTG
[ENA]
¡û
>W1610909491
LSFE01000001
Bacillota
Pediococcus pentosaceus [LSFE]
115224
115299
+
Gln
CTG
[ENA]
¡û
>W1610977434
LVVN01000031
Bacillota
Weissella halotolerans [LVVN]
5924
5999
+
Gln
CTG
[ENA]
¡û
>W1611020900
LYUJ01000019
Bacillota
Pediococcus acidilactici [LYUJ]
195878
195802
-
Gln
CTG
[ENA]
¡û
>W1710028538
AYYY01000063
Bacillota
Paucilactobacillus vaccinostercus DSM 20634 [AYYY]
170786
170712
-
Gln
CTG
[ENA]
¡û
>W1710054499
BBZC01000018
Bacillota
Pediococcus pentosaceus [BBZC]
94757
94832
+
Gln
CTG
[ENA]
¡û
>W1710629379
JQAQ01000003
Bacillota
Pediococcus acidilactici [JQAQ]
193204
193128
-
Gln
CTG
[ENA]
¡û
>W1710629843
JQBB01000007
Bacillota
Pediococcus claussenii [JQBB]
126514
126442
-
Gln
CTG
[ENA]
¡û
>W1710630005
JQBF01000003
Bacillota
Pediococcus pentosaceus [JQBF]
180786
180711
-
Gln
CTG
[ENA]
¡û
>W1710630812
JQBX01000006
Bacillota
Pediococcus stilesii [JQBX]
33197
33123
-
Gln
CTG
[ENA]
¡û
>W1710631060
JQCC01000003
Bacillota
Pediococcus acidilactici [JQCC]
198760
198684
-
Gln
CTG
[ENA]
¡û
>W1710631745
JQCQ01000020
Bacillota
Pediococcus argentinicus [JQCQ]
11030
11105
+
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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