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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238529 (17 seq.)
>A171001886
CP002372
Euryarchaeota
Thermococcus barophilus MP [CP002372]
1662332
1662257
-
Gln
TTG
-
¡û
>A171003785
CP006019
Euryarchaeota
Palaeococcus pacificus DY20341 [CP006019]
1684191
1684116
-
Gln
TTG
-
¡û
>A171003889
CP006670
Euryarchaeota
Thermococcus litoralis DSM 5473 [CP006670]
1587765
1587690
-
Gln
TTG
-
¡û
>A171003894
CP006670
Euryarchaeota
Thermococcus litoralis DSM 5473 [CP006670]
825279
825204
-
Undet
NTG
-
¡û
>A171004056
CP006965
Euryarchaeota
Thermococcus paralvinellae ES1 [CP006965]
1744272
1744197
-
Gln
TTG
-
¡û
>A171006354
CP012200
Euryarchaeota
Thermococcus sp. 2319x1 [CP012200]
1316710
1316785
+
Gln
TTG
-
¡û
>A171006483
CP013050
Euryarchaeota
Thermococcus barophilus CH5 [CP013050]
1883137
1883062
-
Gln
TTG
-
¡û
>WENV170675982
LDZQ01001619
[LDZQ] terrestrial metagenome; oil reservoir sample I2
5914
5839
-
Gln
TTG
[ENA]
¢þ
>WENV170676192
LDZR01001547
[LDZR] terrestrial metagenome; oil reservoir sample K2
340
415
+
Gln
TTG
[ENA]
¢þ
>WENV170676715
LDZS01002031
[LDZS] terrestrial metagenome; oil reservoir sample K3
19705
19630
-
Gln
TTG
[ENA]
¢þ
>W1910200332
FJMQ01000128
Euryarchaeota
Thermococcus litoralis [FJMQ]
222
147
-
Gln
TTG
[ENA]
¡û
>W1610000728
ABSF01000012
Euryarchaeota
Thermococcus barophilus MP [ABSF]
115680
115755
+
Gln
TTG
[ENA]
¡û
>W1610004918
AHVB01000035
Euryarchaeota
Thermococcus litoralis DSM 5473 [AHVB]
31946
32021
+
Gln
TTG
[ENA]
¡û
>W1610004938
AHVB01000063
Euryarchaeota
Thermococcus litoralis DSM 5473 [AHVB]
100313
100388
+
Gln
TTG
[ENA]
¡û
>W1610005600
AKID01000127
Euryarchaeota
Thermococcus sp. PK [AKID]
5077
5002
-
Gln
TTG
[ENA]
¡û
>W1610612444
LGET01000078
Euryarchaeota
Thermococcales archaeon 44_46 [LGET]
5914
5839
-
Gln
TTG
[ENA]
¡û
>W1610717931
LLYW01000025
Euryarchaeota
Thermococcus celericrescens DSM 17994 [LLYW]
81076
81151
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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