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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238541 (86 seq.)
>A171000061
AP011532
Euryarchaeota
Methanocella paludicola SANAE [AP011532]
2053446
2053519
+
Asn
GTT
-
¡û
>A171000394
CP001338
Euryarchaeota
Methanosphaerula palustris E1-9c [CP001338]
2713787
2713862
+
Asn
GTT
-
¡û
>A171001738
CP002101
Euryarchaeota
Methanosalsum zhilinae DSM 4017 [CP002101]
832913
832841
-
Asn
GTT
-
¡û
>A171002922
CP003243
Euryarchaeota
Methanocella conradii HZ254 [CP003243]
1859057
1858983
-
Asn
GTT
-
¡û
>A171007204
HE964772
Euryarchaeota
Methanoculleus bourgensis MS2 MS2T [HE964772]
1625310
1625236
-
Asn
GTT
-
¡û
>A171007560
LT158599
Euryarchaeota
Methanoculleus bourgensis [LT158599]
1634737
1634663
-
Asn
GTT
-
¡û
>A171007606
LT549891
Euryarchaeota
Methanoculleus bourgensis [LT549891]
490051
490125
+
Asn
GTT
-
¡û
>WENV180036876
FVAA010410590
[FVAA] soil metagenome; Soil
32
106
+
Asn
GTT
[ENA]
¢þ
>WENV180094560
MTBK01015515
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
302
229
-
Asn
GTT
[ENA]
¢þ
>WENV180097381
MTBK01185281
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
2173
2099
-
Asn
GTT
[ENA]
¢þ
>WENV180097516
MTBK01193462
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
491
416
-
Asn
GTT
[ENA]
¢þ
>WENV180098454
MTBK01246130
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
2039
1966
-
Asn
GTT
[ENA]
¢þ
>WENV180098490
MTBK01249497
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
5884
5811
-
Asn
GTT
[ENA]
¢þ
>WENV180099109
MTBK01288601
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
140
67
-
Asn
GTT
[ENA]
¢þ
>WENV181230125
OFEK01000306
[OFEK] activated sludge metagenome; Anaerobic digester
10200
10275
+
Asn
GTT
[ENA]
¢þ
>WENV181230367
OFEK01000722
[OFEK] activated sludge metagenome; Anaerobic digester
21961
21888
-
Asn
GTT
[ENA]
¢þ
>WENV181230827
OFEK01003940
[OFEK] activated sludge metagenome; Anaerobic digester
6446
6372
-
Asn
GTT
[ENA]
¢þ
>WENV181412688
OGCK01004321
[OGCK] hot springs metagenome; hot spring sediment
865
938
+
Asn
GTT
[ENA]
¢þ
>WENV183513601
OMKS01006248
[OMKS] sediment metagenome; hot spring sediment
1335
1409
+
Asn
GTT
[ENA]
¢þ
>WENV183701660
PDVH01000099
[PDVH] alkali sediment metagenome; glacial lake sediment
16042
16116
+
Asn
GTT
[ENA]
¢þ
>WENV183702117
PDVH01015629
[PDVH] alkali sediment metagenome; glacial lake sediment
283
209
-
Asn
GTT
[ENA]
¢þ
>WENV170004307
AGTN01633356
[AGTN] bioreactor metagenome; poplar biomass
2365
2438
+
Asn
GTT
[ENA]
¢þ
>At0652
CP000780
Euryarchaeota
Methanoregula boonei 6A8 [CP000780]
473506
473578
+
Asn
GTT
[Ensembl]
¡û
>At1209
CP000559
Euryarchaeota
Methanocorpusculum labreanum Z [CP000559]
1297751
1297823
+
Asn
GTT
[Ensembl]
¡û
>At1267
CP000562
Euryarchaeota
Methanoculleus marisnigri JR1 [CP000562]
2080626
2080698
+
Asn
GTT
[Ensembl]
¡û
>At1615
CP000254
Euryarchaeota
Methanospirillum hungatei JF-1 [CP000254]
2596309
2596381
+
Asn
GTT
[Ensembl]
¡û
>At2063
AM114193
Euryarchaeota
Methanocella arvoryzae MRE50 [AM114193]
961756
961828
+
Asn
GTT
[Ensembl]
¡û
>WENV170561985
CZCB01000509
[CZCB] anaerobic digester metagenome; anaerobic digester
15476
15549
+
Asn
GTT
[ENA]
¢þ
>WENV170563200
CZCB01011825
[CZCB] anaerobic digester metagenome; anaerobic digester
3782
3856
+
Asn
GTT
[ENA]
¢þ
>WENV170668622
LAHQ01005627
[LAHQ] activated sludge metagenome; sample C-2; Sludge from acidogenic chamber (second chamber) of Anaerobic Baffled Reactor over
1618
1690
+
Asn
GTT
[ENA]
¢þ
>WENV170670274
LAHT01000923
[LAHT] activated sludge metagenome; Sample C-4; Sludge from methanogenic chamber (fourth chamber) of Anaerobic Baffled Reactor over
12326
12400
+
Asn
GTT
[ENA]
¢þ
>WENV170670367
LAHT01003951
[LAHT] activated sludge metagenome; Sample C-4; Sludge from methanogenic chamber (fourth chamber) of Anaerobic Baffled Reactor over
2384
2457
+
Asn
GTT
[ENA]
¢þ
>WENV170670452
LAHT01012359
[LAHT] activated sludge metagenome; Sample C-4; Sludge from methanogenic chamber (fourth chamber) of Anaerobic Baffled Reactor over
1823
1896
+
Asn
GTT
[ENA]
¢þ
>WENV170670510
LAHT01027524
[LAHT] activated sludge metagenome; Sample C-4; Sludge from methanogenic chamber (fourth chamber) of Anaerobic Baffled Reactor over
232
305
+
Asn
GTT
[ENA]
¢þ
>WENV170670735
LAHU01000125
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
11671
11745
+
Asn
GTT
[ENA]
¢þ
>WENV170670837
LAHU01002204
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
19748
19821
+
Asn
GTT
[ENA]
¢þ
>WENV170670942
LAHU01005645
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
825
898
+
Asn
GTT
[ENA]
¢þ
>WENV170671823
LAHU01182434
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
125
52
-
Asn
GTT
[ENA]
¢þ
>WENV170674765
LCWY01002773
[LCWY] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
1106
1032
-
Asn
GTT
[ENA]
¢þ
>WENV170675056
LCWZ01002707
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
1106
1032
-
Asn
GTT
[ENA]
¢þ
>WENV170675877
LDZQ01001160
[LDZQ] terrestrial metagenome; oil reservoir sample I2
13575
13650
+
Asn
GTT
[ENA]
¢þ
>WENV170676586
LDZS01001656
[LDZS] terrestrial metagenome; oil reservoir sample K3
5084
5009
-
Asn
GTT
[ENA]
¢þ
>WENV170677585
LDZT01007123
[LDZT] terrestrial metagenome; oil reservoir sample SB1
3558
3484
-
Asn
GTT
[ENA]
¢þ
>WENV170678720
LDZU01004074
[LDZU] terrestrial metagenome; oil reservoir sample SB2
82
9
-
Asn
GTT
[ENA]
¢þ
>WENV170689019
LFRM01272291
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
5215
5142
-
Asn
GTT
[ENA]
¢þ
>WENV170691315
LFRM01392012
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
323
247
-
Asn
GTT
[ENA]
¢þ
>WENV170715263
LNQE01001090
[LNQE] hydrocarbon metagenome; hydrocarbon-contaminated ditch
8061
8135
+
Asn
GTT
[ENA]
¢þ
>WENV170715365
LNQE01001808
[LNQE] hydrocarbon metagenome; hydrocarbon-contaminated ditch
8162
8235
+
Asn
GTT
[ENA]
¢þ
>WENV170715985
LQYC01000048
[LQYC] bioreactor metagenome; benzene-degrading methanogenic enrichment culture from a contaminated aquifer at an oil
21657
21731
+
Asn
GTT
[ENA]
¢þ
>WENV170716793
LSQX01011899
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1561
1488
-
Asn
GTT
[ENA]
¢þ
>WENV170719233
LSQX01106761
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
237
163
-
Asn
GTT
[ENA]
¢þ
>WENV170719355
LSQX01111933
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
4991
4918
-
Asn
GTT
[ENA]
¢þ
>WENV170722828
LSQX01245024
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
2992
2918
-
Asn
GTT
[ENA]
¢þ
>WENV170726270
LSQX01373328
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
238
164
-
Asn
GTT
[ENA]
¢þ
>WENV170971500
MTKX01006276
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
537
464
-
Asn
GTT
[ENA]
¢þ
>WENV170976977
MTKZ01015188
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
3771
3844
+
Asn
GTT
[ENA]
¢þ
>W1910211667
FMID01000011
Euryarchaeota
Methanoculleus chikugoensis [FMID]
18168
18242
+
Asn
GTT
[ENA]
¡û
>W1910226936
FNFT01000001
Euryarchaeota
Methanoculleus thermophilus DSM 2373 [FNFT]
151868
151944
+
Asn
GTT
[ENA]
¡û
>W1910572533
JMIO01000075
Euryarchaeota
Methanoculleus sp. MH98A [JMIO]
19926
19852
-
Asn
GTT
[ENA]
¡û
>W1910573198
JONQ01000014
Euryarchaeota
Methermicoccus shengliensis DSM 18856 [JONQ]
39603
39528
-
Asn
GTT
[ENA]
¡û
>W1910583813
JXOJ01000002
Euryarchaeota
Methanoculleus sediminis S3Fa [JXOJ]
400264
400338
+
Asn
GTT
[ENA]
¡û
>W1910617148
LHQS01000001
Euryarchaeota
Methanoculleus taiwanensis CYW4 [LHQS]
139334
139410
+
Asn
GTT
[ENA]
¡û
>W1910635215
LMVO01000025
Euryarchaeota
Methanocorpusculum parvum XII [LMVO]
5797
5723
-
Asn
GTT
[ENA]
¡û
>W1910783521
MPOY01000101
Euryarchaeota
Methanoculleus sp. EBM-46 [MPOY]
4710
4783
+
Asn
GTT
[ENA]
¡û
>W1910783558
MPPA01000009
Euryarchaeota
Methanococcoides sp. EBM-47 [MPPA]
251212
251140
-
Asn
GTT
[ENA]
¡û
>W1911581310
PGCL01000001
Euryarchaeota
Methanofollis fontis FWC-SCC2 [PGCL]
323767
323840
+
Asn
GTT
[ENA]
¡û
>W1911675936
QGMY01000017
Euryarchaeota
Methanospirillum lacunae Ki8-1 [QGMY]
27657
27585
-
Asn
GTT
[ENA]
¡û
>W1911675956
QGMZ01000018
Euryarchaeota
Methanospirillum stamsii Pt1 [QGMZ]
168311
168387
+
Asn
GTT
[ENA]
¡û
>W1610000167
AALU01000001
Euryarchaeota
Methanospirillum hungatei JF-1 [AALU]
113165
113093
-
Asn
GTT
[ENA]
¡û
>W1610000242
AASI01000001
Euryarchaeota
Methanoculleus marisnigri JR1 [AASI]
461052
461126
+
Asn
GTT
[ENA]
¡û
>W1610000995
ABZB01000002
Euryarchaeota
Methanosphaerula palustris palustris E1-9c [ABZB]
630482
630557
+
Asn
GTT
[ENA]
¡û
>W1610003466
AGCO01000001
Euryarchaeota
Methanofollis liminatans DSM 4140 [AGCO]
278662
278736
+
Asn
GTT
[ENA]
¡û
>W1610004260
AGIY02000001
Euryarchaeota
Methanolinea tarda NOBI-1 [AGIY]
1787869
1787796
-
Asn
GTT
[ENA]
¡û
>W1610024420
AUMX01000004
Euryarchaeota
Methanocorpusculum bavaricum DSM 4179 [AUMX]
5547
5473
-
Asn
GTT
[ENA]
¡û
>W1610045236
BBBH01000012
Euryarchaeota
Methanoculleus chikugoensis JCM 10825 [BBBH]
28406
28332
-
Asn
GTT
[ENA]
¡û
>W1610062956
BCNW01000001
Euryarchaeota
Methanofollis ethanolicus HASU [BCNW]
192430
192504
+
Asn
GTT
[ENA]
¡û
>W1610063015
BCNX01000006
Euryarchaeota
Methanoculleus thermophilus CR-1 [BCNX]
229436
229512
+
Asn
GTT
[ENA]
¡û
>W1610063075
BCNY01000015
Euryarchaeota
Methanoculleus horonobensis T10 [BCNY]
33359
33433
+
Asn
GTT
[ENA]
¡û
>W1610605030
LFRN01000192
Euryarchaeota
Candidatus Methanoculleus thermohydrogenotrophicum DTU006 [LFRN]
5215
5142
-
Asn
GTT
[ENA]
¡û
>W1610605077
LFRO01000101
Euryarchaeota
Methanoculleus sp. DTU007 [LFRO]
323
247
-
Asn
GTT
[ENA]
¡û
>W1610612573
LGEW01000016
Euryarchaeota
Euryarchaeota archaeon 55_53 [LGEW]
13575
13650
+
Asn
GTT
[ENA]
¡û
>W1610613085
LGFK01000029
Euryarchaeota
Methanosarcinales archeaon 56_1174 [LGFK]
5084
5009
-
Asn
GTT
[ENA]
¡û
>W1610613827
LGGJ01000161
Euryarchaeota
Methanocalculus sp. 52_23 [LGGJ]
3558
3484
-
Asn
GTT
[ENA]
¡û
>W1610686030
LKUF01000276
Euryarchaeota
Methanolinea sp. SDB [LKUF]
6476
6403
-
Asn
GTT
[ENA]
¡û
>W1610946081
LUYK01000192
Euryarchaeota
Methanomicrobiales archaeon Methan_07 [LUYK]
5234
5307
+
Asn
GTT
[ENA]
¡û
>ENV000758
AM114193
Environmental sample from ENV division of INSDC
961755
961832
+
Asn
GTT
[Ensembl]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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