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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238582 (63 seq.)
>W1711505583
MKVR01000013
Betaproteobacteria
Nitrosospira sp. 56-18 [MKVR]
4865
4790
-
Thr
CGT
[ENA]
¡û
>C171083805
CP018787
Betaproteobacteria
Oxalobacter formigenes HC-1 [CP018787]
305758
305833
+
Thr
CGT
-
¡û
>C171089790
CP019169
Betaproteobacteria
Betaproteobacteria bacterium GR16-43 [CP019169]
1688313
1688238
-
Thr
CGT
-
¡û
>C171094217
CP019430
Betaproteobacteria
Oxalobacter formigenes OXCC13 [CP019430]
242982
243057
+
Thr
CGT
-
¡û
>C015159
CP000103
Betaproteobacteria
Nitrosospira multiformis ATCC 25196 [CP000103]
3157579
3157654
+
Thr
CGT
[Ensembl]
¡û
>WENV180284917
OBID01159360
[OBID] metagenome; sludge
219
144
-
Thr
CGT
[ENA]
¢þ
>WENV180337536
OBLG01053741
[OBLG] human gut metagenome; human gut
663
738
+
Thr
CGT
[ENA]
¢þ
>WENV180694881
OCZS012790365
[OCZS] soil metagenome; soil
84
159
+
Thr
CGT
[ENA]
¢þ
>WENV180743162
ODHH01125792
[ODHH] human metagenome; G_DNA_Stool
99
24
-
Thr
CGT
[ENA]
¢þ
>WENV181111474
OEEK01088562
[OEEK] human metagenome; G_DNA_Stool
165
240
+
Thr
CGT
[ENA]
¢þ
>WENV181172206
OEIV010541766
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
229
154
-
Thr
CGT
[ENA]
¢þ
>WENV181192631
OEPS010849584
[OEPS] soil metagenome; soil
107
32
-
Thr
CGT
[ENA]
¢þ
>WENV181293868
OFHG01034045
[OFHG] soil metagenome; Clay
968
893
-
Thr
CGT
[ENA]
¢þ
>WENV181294181
OFHG01094366
[OFHG] soil metagenome; Clay
370
295
-
Thr
CGT
[ENA]
¢þ
>WENV181296895
OFHK01001869
[OFHK] soil metagenome; Clay
3707
3632
-
Thr
CGT
[ENA]
¢þ
>WENV181297791
OFHK01135291
[OFHK] soil metagenome; Clay
253
178
-
Thr
CGT
[ENA]
¢þ
>WENV181469041
OGES01038038
[OGES] metagenome; Human gut stool
453
528
+
Thr
CGT
[ENA]
¢þ
>WENV181882861
OGXI01000606
[OGXI] human gut metagenome; faeces
4178
4253
+
Thr
CGT
[ENA]
¢þ
>WENV181929004
OGYO01007618
[OGYO] human gut metagenome; faeces
3546
3471
-
Thr
CGT
[ENA]
¢þ
>WENV181973115
OHAA01012148
[OHAA] human gut metagenome; faeces
105
30
-
Thr
CGT
[ENA]
¢þ
>WENV182009605
OHBJ01025376
[OHBJ] human gut metagenome; faeces
1936
1861
-
Thr
CGT
[ENA]
¢þ
>WENV182632225
OJKW01053898
[OJKW] metagenome; faeces
211
136
-
Thr
CGT
[ENA]
¢þ
>WENV182885874
OKSC01036168
[OKSC] human gut metagenome; faeces
1176
1251
+
Thr
CGT
[ENA]
¢þ
>WENV183034228
OLFY01079379
[OLFY] human gut metagenome; faeces
146
71
-
Thr
CGT
[ENA]
¢þ
>WENV183086369
OLJF01035889
[OLJF] metagenome; faeces
886
961
+
Thr
CGT
[ENA]
¢þ
>WENV183131360
OLOA01031845
[OLOA] human gut metagenome; faeces
1383
1308
-
Thr
CGT
[ENA]
¢þ
>WENV183330872
OLWB01028810
[OLWB] human gut metagenome; faeces
601
526
-
Thr
CGT
[ENA]
¢þ
>WENV183576076
OOCI01026029
[OOCI] human gut metagenome; human gut
415
340
-
Thr
CGT
[ENA]
¢þ
>WENV170070367
CDZQ01022826
[CDZQ] gut metagenome; human stools
13705
13780
+
Thr
CGT
[ENA]
¢þ
>WENV170661857
JXWV01138325
[JXWV] soil metagenome; rice field; organic FYM Plot
280
205
-
Thr
CGT
[ENA]
¢þ
>WENV170709690
LNFM01000589
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
30297
30372
+
Thr
CGT
[ENA]
¢þ
>WENV170711792
LNFM01007415
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
11876
11801
-
Thr
CGT
[ENA]
¢þ
>WENV170712537
LNFM01014593
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
272
197
-
Thr
CGT
[ENA]
¢þ
>WENV170713561
LNFM01034774
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
2179
2104
-
Thr
CGT
[ENA]
¢þ
>W09119219
ACDP01000049
Betaproteobacteria
Oxalobacter paraformigenes HOxBLS [ACDP]
37617
37542
-
Thr
CGT
[ENA]
¡û
>W09119265
ACDQ01000016
Betaproteobacteria
Oxalobacter formigenes OXCC13 [ACDQ]
27496
27421
-
Thr
CGT
[ENA]
¡û
>C191004339
AP018721
Betaproteobacteria
Sulfuritortus calidifontis J1A [AP018721]
1724132
1724207
+
Thr
CGT
-
¡û
>W1911496906
OCMZ01000001
Betaproteobacteria
Nitrosovibrio sp. Nv4 [OCMZ]
598686
598611
-
Thr
CGT
[ENA]
¡û
>W1911802753
QYUN01000002
Betaproteobacteria
Noviherbaspirillum cavernae K2R10-39 [QYUN]
2958045
2957970
-
Thr
CGT
[ENA]
¡û
>W1911802822
QYUO01000002
Betaproteobacteria
Noviherbaspirillum saxi K1R23-30 [QYUO]
212266
212191
-
Thr
CGT
[ENA]
¡û
>W1810464091
QAAC01000010
Betaproteobacteria
Nitrosospira sp. Nsp6 [QAAC]
104318
104393
+
Thr
CGT
[ENA]
¡û
>W1810476855
QAOI01000014
Betaproteobacteria
Nitrosomonas oligotropha Nm49 [QAOI]
65097
65172
+
Thr
CGT
[ENA]
¡û
>W1810476964
QAOK01000035
Betaproteobacteria
Nitrosospira multiformis Nl12 [QAOK]
189
114
-
Thr
CGT
[ENA]
¡û
>W1810658849
QJJP01000032
Betaproteobacteria
Nitrosomonas sp. Nm84 [QJJP]
20793
20718
-
Thr
CGT
[ENA]
¡û
>C151082883
CP011451
Betaproteobacteria
Nitrosomonas communis Nm2 [CP011451]
1113430
1113355
-
Thr
CGT
[Ensembl]
¡û
>W1511508776
JXQM01000014
Betaproteobacteria
Nitrosospira sp. NpAV [JXQM]
10427
10352
-
Thr
CGT
[ENA]
¡û
>W1511683773
LFLS01000017
Betaproteobacteria
Herbaspirillum autotrophicum IAM 14942 [LFLS]
118245
118170
-
Thr
CGT
[ENA]
¡û
>W1511683889
LFLU01000010
Betaproteobacteria
Herbaspirillum rhizosphaerae UMS-37 [LFLU]
106618
106693
+
Thr
CGT
[ENA]
¡û
>W1710507302
FMVD01000012
Betaproteobacteria
Nitrosospira sp. Nsp13 [FMVD]
5615
5540
-
Thr
CGT
[ENA]
¡û
>W1710507951
FMVQ01000012
Betaproteobacteria
Nitrosospira sp. Nl5 [FMVQ]
93873
93948
+
Thr
CGT
[ENA]
¡û
>W1710509144
FMWY01000008
Betaproteobacteria
Nitrosospira sp. Nsp18 [FMWY]
13900
13825
-
Thr
CGT
[ENA]
¡û
>W1710517416
FNDH01000041
Betaproteobacteria
Nitrosomonas sp. Nm132 [FNDH]
10935
10860
-
Thr
CGT
[ENA]
¡û
>W1710527360
FNKY01000001
Betaproteobacteria
Nitrosospira multiformis [FNKY]
573713
573638
-
Thr
CGT
[ENA]
¡û
>W1710528547
FNNH01000035
Betaproteobacteria
Nitrosomonas communis [FNNH]
2513
2438
-
Thr
CGT
[ENA]
¡û
>W1710531198
FNPJ01000047
Betaproteobacteria
Nitrosomonas sp. Nm33 [FNPJ]
22582
22657
+
Thr
CGT
[ENA]
¡û
>W1710532607
FNQL01000010
Betaproteobacteria
Nitrosospira multiformis [FNQL]
5381
5306
-
Thr
CGT
[ENA]
¡û
>W1710538909
FNUX01000012
Betaproteobacteria
Nitrosomonas ureae [FNUX]
40395
40320
-
Thr
CGT
[ENA]
¡û
>W1710547000
FOCP01000009
Betaproteobacteria
Nitrosomonas marina [FOCP]
1481
1406
-
Thr
CGT
[ENA]
¡û
>W1710548603
FODX01000008
Betaproteobacteria
Nitrosovibrio sp. Nv6 [FODX]
4381
4306
-
Thr
CGT
[ENA]
¡û
>W1710551239
FOFX01000093
Betaproteobacteria
Nitrosomonas ureae [FOFX]
4737
4812
+
Thr
CGT
[ENA]
¡û
>W1710565308
FORD01000026
Betaproteobacteria
Nitrosomonas sp. Nm34 [FORD]
37019
36944
-
Thr
CGT
[ENA]
¡û
>W1710578975
FPBZ01000010
Betaproteobacteria
Nitrosospira multiformis [FPBZ]
14530
14455
-
Thr
CGT
[ENA]
¡û
>W1710591607
FRBV01000009
Betaproteobacteria
Nitrosospira sp. Nsp11 [FRBV]
108267
108342
+
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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