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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238637 (28 seq.)
>W1710818203
LKNB01000012
Rhodothermota
Rhodothermaceae bacterium Tc-Br11_B2g6_7 [LKNB]
40294
40369
+
Glu
CTC
[ENA]
¡û
>W131182126
ARQC01000582
Rhodothermota
Salinibacter sp. J07SB67 [ARQC]
413
340
-
Glu
CTC
[ENA]
¡û
>C171105894
CP020382
Rhodothermota
Rhodothermaceae bacterium RA [CP020382]
1190400
1190327
-
Glu
CTC
-
¡û
>C024122
CP000159
Rhodothermota
Salinibacter ruber DSM 13855 [CP000159]
3313756
3313684
-
Glu
CTC
[Ensembl]
¡û
>WENV181413329
OGCK01053460
[OGCK] hot springs metagenome; hot spring sediment
731
805
+
Glu
TTC
[ENA]
¢þ
>WENV183749187
PPFU01133021
[PPFU] hypolithon metagenome; Antarctic Hypolithon
486
559
+
Glu
CTC
[ENA]
¢þ
>WENV183749393
PPFU01162140
[PPFU] hypolithon metagenome; Antarctic Hypolithon
275
348
+
Glu
CTC
[ENA]
¢þ
>ENV08001746
ABOD01001150
saltern metagenome; microbial fraction from high salinity saltern in San Diego, CA
31
104
+
Glu
CTC
[ENA]
¡û
>WENV170681114
LFFM01000067
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
40294
40369
+
Glu
CTC
[ENA]
¢þ
>WENV170771096
LXNI01000400
[LXNI] sponge metagenome; marine sponge reef
25868
25793
-
Glu
CTC
[ENA]
¢þ
>WENV170772510
LXNJ01000011
[LXNJ] sponge metagenome; marine sponge reef
8307
8232
-
Glu
TTC
[ENA]
¢þ
>WENV170772519
LXNJ01000022
[LXNJ] sponge metagenome; marine sponge reef
72454
72527
+
Glu
CTC
[ENA]
¢þ
>WENV170774248
LXNJ01030416
[LXNJ] sponge metagenome; marine sponge reef
972
897
-
Glu
CTC
[ENA]
¢þ
>WENV170958756
MKWU01001902
[MKWU] sponge metagenome;
29977
29902
-
Glu
CTC
[ENA]
¢þ
>C181188767
CP030158
Rhodothermota
Roseithermus sacchariphilus MEBiC09517 [CP030158]
3072559
3072632
+
Glu
CTC
-
¡û
>C181192111
CP030716
Rhodothermota
Salinibacter ruber P13 [CP030716]
3361242
3361169
-
Glu
CTC
-
¡û
>C191072375
CP030356
Rhodothermota
Salinibacter ruber P18 [CP030356]
3524362
3524289
-
Glu
CTC
-
¡û
>C191072419
CP030357
Rhodothermota
Salinibacter ruber SP38 [CP030357]
3339267
3339194
-
Glu
CTC
-
¡û
>C191072465
CP030361
Rhodothermota
Salinibacter ruber SP73 [CP030361]
3547521
3547448
-
Glu
CTC
-
¡û
>C191072509
CP030364
Rhodothermota
Salinibacter ruber M1 [CP030364]
3292650
3292577
-
Glu
CTC
-
¡û
>C191072554
CP030369
Rhodothermota
Salinibacter ruber RM158 [CP030369]
3496468
3496395
-
Glu
CTC
-
¡û
>W1910870060
NCQX01000056
Rhodothermota
Salinibacter ruber SP273 [NCQX]
10054
9981
-
Glu
CTC
[ENA]
¡û
>W1910870103
NCQY01000023
Rhodothermota
Salinibacter altiplanensis AN15 [NCQY]
28025
27952
-
Glu
CTC
[ENA]
¡û
>W1910870147
NCQZ01000040
Rhodothermota
Salinibacter altiplanensis LL19 [NCQZ]
181275
181348
+
Glu
CTC
[ENA]
¡û
>W1910870196
NCRA01000031
Rhodothermota
Salinibacter altiplanensis AN4 [NCRA]
28637
28564
-
Glu
CTC
[ENA]
¡û
>C131018241
FP565814
Rhodothermota
Salinibacter ruber M8 [FP565814]
3384748
3384675
-
Glu
CTC
[Ensembl]
¡û
>W1610682502
LKNB01000012
Rhodothermota
Rhodothermaceae bacterium Tc-Br11_B2g6_7 [LKNB]
40294
40369
+
Glu
CTC
[ENA]
¡û
>W1610875531
LRDG01000067
Rhodothermota
Rhodothermaceae bacterium RA [LRDG]
575952
575879
-
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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