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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238639 (63 seq.)
>W1710853412
LLWQ01000163
Alphaproteobacteria
Paracoccus sp. MKU1 [LLWQ]
94455
94530
+
Ala
CGC
[ENA]
¡û
>W1710889742
LNBC01000012
Alphaproteobacteria
Paracoccus aminovorans [LNBC]
65715
65640
-
Ala
CGC
[ENA]
¡û
>W1712104737
NIPZ01000007
Alphaproteobacteria
Paracoccus yeei [NIPZ]
64590
64665
+
Ala
CGC
[ENA]
¡û
>C171107686
CP020442
Alphaproteobacteria
Paracoccus yeei FDAARGOS_252 [CP020442]
1298126
1298051
-
Ala
CGC
-
¡û
>C171110785
CP020612
Alphaproteobacteria
Paracoccus contaminans RKI 16-01929T [CP020612]
996868
996793
-
Ala
CGC
-
¡û
>W131214657
ATUJ01000005
Alphaproteobacteria
Paracoccus zeaxanthinifaciens ATCC 21588 [ATUJ]
204271
204346
+
Ala
CGC
[ENA]
¡û
>W131158913
AQUO01000001
Alphaproteobacteria
Paracoccus sp. N5 [AQUO]
981910
981835
-
Ala
CGC
[ENA]
¡û
>C016025
CP000489
Alphaproteobacteria
Paracoccus denitrificans PD1222 [CP000489, CP000490]
2341807
2341732
-
Ala
CGC
[Ensembl]
¡û
>WENV181168093
OEIU01158715
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
444
519
+
Ala
CGC
[ENA]
¢þ
>W141277305
JAEM01000011
Alphaproteobacteria
Paracoccus pantotrophus J46 [JAEM]
28038
28113
+
Ala
CGC
[ENA]
¡û
>W141279574
JAGK01000007
Alphaproteobacteria
Paracoccus pantotrophus J40 [JAGK]
28518
28593
+
Ala
CGC
[ENA]
¡û
>WENV183729250
PJTQ01015452
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
907
832
-
Ala
CGC
[ENA]
¢þ
>WENV183733741
PJTY01019734
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
514
439
-
Ala
CGC
[ENA]
¢þ
>WENV170564868
CZPY01000012
[CZPY] metagenome; PAHs-polluted Soil
65715
65640
-
Ala
CGC
[ENA]
¢þ
>WENV170784124
MCHG01000022
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
110629
110704
+
Ala
CGC
[ENA]
¢þ
>PL191000054
CP000489
Alphaproteobacteria
Paracoccus denitrificans PD1222 plasmid:phage/plasmid primase, P4 family (CP000489)
2341807
2341732
-
Ala
CGC
[Ensembl]
¡û
>C181099802
CP024422
Alphaproteobacteria
Paracoccus yeei TT13 [CP024422]
874403
874328
-
Ala
CGC
-
¡û
>C181117178
CP025430
Alphaproteobacteria
Paracoccus zhejiangensis J6 [CP025430]
2724167
2724242
+
Ala
CGC
-
¡û
>C181119682
CP025583
Alphaproteobacteria
Paracoccus jeotgali CBA4604 [CP025583]
1957762
1957687
-
Ala
CGC
-
¡û
>C181179034
CP029479
Alphaproteobacteria
Phenylobacterium parvum HYN0004 [CP029479]
2677388
2677463
+
Ala
CGC
-
¡û
>C181190847
CP030239
Alphaproteobacteria
Paracoccus mutanolyticus RSP-02 [CP030239]
1289950
1289875
-
Ala
CGC
-
¡û
>C181203406
LN832559
Alphaproteobacteria
Paracoccus aminovorans [LN832559]
2845537
2845462
-
Ala
CGC
-
¡û
>C191073590
CP031078
Alphaproteobacteria
Paracoccus yeei CCUG 32053 [CP031078]
2739776
2739701
-
Ala
CGC
-
¡û
>C191134391
CP035090
Alphaproteobacteria
Paracoccus denitrificans ATCC 19367 [CP035090, CP035091]
1083096
1083021
-
Ala
CGC
-
¡û
>W141558864
JHWH01000003
Alphaproteobacteria
Paracoccus yeei ATCC BAA-599 [JHWH]
87557
87482
-
Ala
CGC
[ENA]
¡û
>W09103061
AAIT01000008
Alphaproteobacteria
Paracoccus denitrificans PD1222 [AAIT]
191128
191053
-
Ala
CGC
[ENA]
¡û
>C141006337
CP006650
Alphaproteobacteria
Paracoccus aminophilus JCM 7686 [CP006650]
3500809
3500734
-
Ala
CGC
[Ensembl]
¡û
>W1910547086
FZNM01000011
Alphaproteobacteria
Paracoccus sediminis DSM 26170 [FZNM]
27634
27559
-
Ala
CGC
[ENA]
¡û
>W1911245329
NSJZ01000004
Alphaproteobacteria
Paracoccus salipaludis WN007 [NSJZ]
126856
126781
-
Ala
CGC
[ENA]
¡û
>W1911397929
NWMQ01000019
Alphaproteobacteria
Paracoccus sp. SY [NWMQ]
14516
14441
-
Ala
CGC
[ENA]
¡û
>W1911698509
QNRC01000025
Alphaproteobacteria
Paracoccus siganidrum M26 [QNRC]
59879
59804
-
Ala
CGC
[ENA]
¡û
>W1911705504
QOKZ01000002
Alphaproteobacteria
Paracoccus alkanivorans 4·î2Æü [QOKZ]
192407
192482
+
Ala
CGC
[ENA]
¡û
>W1911810946
QZCG01000001
Alphaproteobacteria
Paracoccus onubensis 1011MAR3C25 [QZCG]
493389
493314
-
Ala
CGC
[ENA]
¡û
>W1911813266
QZEW01000156
Alphaproteobacteria
Paracoccus siganidrum DSM 26381 [QZEW]
6967
6892
-
Ala
CGC
[ENA]
¡û
>W1810235972
PPGA01000003
Alphaproteobacteria
Paracoccus denitrificans ISTOD1 [PPGA]
256602
256677
+
Ala
CGC
[ENA]
¡û
>W1810385260
PXNQ01000003
Alphaproteobacteria
Paracoccus methylarcula VKM B-2159 [PXNQ]
331350
331275
-
Ala
CGC
[ENA]
¡û
>W1810585326
QFCQ01000080
Alphaproteobacteria
Paracoccus thiocyanatus SST [QFCQ]
9095
9170
+
Ala
CGC
[ENA]
¡û
>W1810684493
QKYL01000126
Alphaproteobacteria
Paracoccus saliphilus CCTCC AB 2016131 [QKYL]
7000
6925
-
Ala
CGC
[ENA]
¡û
>W1810697105
QLUV01000001
Alphaproteobacteria
Paracoccus endophyticus SYSUP0003 [QLUV]
443057
442982
-
Ala
CGC
[ENA]
¡û
>W1810750726
QOZU01000004
Alphaproteobacteria
Paracoccus pantotrophus KS1 [QOZU]
61356
61281
-
Ala
CGC
[ENA]
¡û
>W1810759481
QPJL01000011
Alphaproteobacteria
Paracoccus lutimaris CECT 8525 [QPJL]
138106
138181
+
Ala
CGC
[ENA]
¡û
>W1810862249
QTUJ01000002
Alphaproteobacteria
Paracoccus versutus DSM 17099 [QTUJ]
395232
395307
+
Ala
CGC
[ENA]
¡û
>C11117049
CP002897
Alphaproteobacteria
Paracoccus denitrificans [CP002897]
2677925
2677850
-
Ala
CGC
[Ensembl]
¡û
>W1511348578
JRKN01000055
Alphaproteobacteria
Paracoccus halophilus JCM 14014 [JRKN]
441
516
+
Ala
CGC
[ENA]
¡û
>W1511348655
JRKP01000057
Alphaproteobacteria
Paracoccus sanguinis 39524 [JRKP]
19003
19078
+
Ala
CGC
[ENA]
¡û
>W1511348682
JRKQ01000012
Alphaproteobacteria
Paracoccus sanguinis 5503 [JRKQ]
26040
26115
+
Ala
CGC
[ENA]
¡û
>W1511348734
JRKR01000022
Alphaproteobacteria
Paracoccus sanguinis 10990 [JRKR]
11041
10966
-
Ala
CGC
[ENA]
¡û
>W1511348781
JRKS01000009
Alphaproteobacteria
Paracoccus sphaerophysae HAMBI 3106 [JRKS]
11212
11287
+
Ala
CGC
[ENA]
¡û
>W1511348821
JRKT01000016
Alphaproteobacteria
Paracoccus sanguinis 4681 [JRKT]
25207
25132
-
Ala
CGC
[ENA]
¡û
>W11143052
AEPN01000025
Alphaproteobacteria
Paracoccus sp. TRP [AEPN]
47757
47832
+
Ala
CGC
[ENA]
¡û
>W1610716536
LLWQ01000163
Alphaproteobacteria
Paracoccus sp. MKU1 [LLWQ]
94455
94530
+
Ala
CGC
[ENA]
¡û
>W1610750120
LNBC01000012
Alphaproteobacteria
Paracoccus aminovorans [LNBC]
65715
65640
-
Ala
CGC
[ENA]
¡û
>W1710518457
FNEA01000005
Alphaproteobacteria
Paracoccus denitrificans [FNEA]
192617
192542
-
Ala
CGC
[ENA]
¡û
>W1710521156
FNGE01000001
Alphaproteobacteria
Paracoccus chinensis [FNGE]
168897
168822
-
Ala
CGC
[ENA]
¡û
>W1710528212
FNNA01000002
Alphaproteobacteria
Paracoccus sanguinis [FNNA]
948483
948558
+
Ala
CGC
[ENA]
¡û
>W1710540955
FNXG01000003
Alphaproteobacteria
Paracoccus alkenifer [FNXG]
161283
161208
-
Ala
CGC
[ENA]
¡û
>W1710555572
FOJO01000049
Alphaproteobacteria
Paracoccus halophilus [FOJO]
10215
10140
-
Ala
CGC
[ENA]
¡û
>W1710563597
FOPU01000029
Alphaproteobacteria
Paracoccus aminovorans [FOPU]
48614
48689
+
Ala
CGC
[ENA]
¡û
>W1710571577
FOWA01000039
Alphaproteobacteria
Paracoccus pantotrophus [FOWA]
1126
1051
-
Ala
CGC
[ENA]
¡û
>W1710574678
FOYK01000005
Alphaproteobacteria
Paracoccus denitrificans [FOYK]
190528
190453
-
Ala
CGC
[ENA]
¡û
>W1710592388
FRCK01000007
Alphaproteobacteria
Paracoccus solventivorans [FRCK]
603
528
-
Ala
CGC
[ENA]
¡û
>W1710599521
FTOU01000001
Alphaproteobacteria
Paracoccus saliphilus [FTOU]
694759
694834
+
Ala
CGC
[ENA]
¡û
>W1710608122
FXAQ01000012
Alphaproteobacteria
Paracoccus sp. J56 [FXAQ]
110944
111019
+
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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