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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238847 (57 seq.)
>W1710889299
LNAL01000006
Bacteroidota
Solirubrum puertoriconensis MC1A [LNAL]
346480
346555
+
Gly
GCC
[ENA]
¡û
>W1710889300
LNAL01000006
Bacteroidota
Solirubrum puertoriconensis MC1A [LNAL]
346701
346774
+
Gly
GCC
[ENA]
¡û
>W1711377548
MDZA01000111
Bacteroidota
Hymenobacter coccineus CCM 8649 [MDZA]
59230
59155
-
Gly
GCC
[ENA]
¡û
>W1711377591
MDZB01000084
Bacteroidota
Hymenobacter lapidarius CCM 8643 [MDZB]
74676
74751
+
Gly
GCC
[ENA]
¡û
>W1711377628
MDZC01000044
Bacteroidota
Hymenobacter glacialis CCM 8648 [MDZC]
23431
23356
-
Gly
GCC
[ENA]
¡û
>W1711726894
MTSE01000038
Bacteroidota
Hymenobacter crusticola MIMBbqt21 [MTSE]
8978
9053
+
Gly
GCC
[ENA]
¡û
>W1711767897
MVBC01000017
Bacteroidota
Hymenobacter sp. CRA2 [MVBC]
92416
92341
-
Gly
GCC
[ENA]
¡û
>W1711767898
MVBC01000017
Bacteroidota
Hymenobacter sp. CRA2 [MVBC]
92181
92106
-
Gly
GCC
[ENA]
¡û
>W131167782
ARDO01000001
Bacteroidota
Pontibacter roseus DSM 17521 [ARDO]
644682
644757
+
Gly
GCC
[ENA]
¡û
>W131215965
ATVL01000006
Bacteroidota
Hymenobacter norwichensis DSM 15439 [ATVL]
241614
241539
-
Gly
GCC
[ENA]
¡û
>WENV180037318
FVAA010889146
[FVAA] soil metagenome; Soil
105
178
+
Gly
GCC
[ENA]
¢þ
>WENV181315172
OFJN01004001
[OFJN] marine metagenome; sea ice
312
237
-
Gly
GCC
[ENA]
¢þ
>WENV170988928
MWVY01033030
[MWVY] soil metagenome; MS7-5 sample; Antarctic (ecotone) soil
496
421
-
Gly
GCC
[ENA]
¢þ
>WENV170990929
MWWA01073472
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
344
269
-
Gly
GCC
[ENA]
¢þ
>WENV170997438
MWWG01133097
[MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil
429
354
-
Gly
GCC
[ENA]
¢þ
>WENV170997439
MWWG01133097
[MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil
118
43
-
Gly
GCC
[ENA]
¢þ
>WENV170999447
MWWK01060199
[MWWK] soil metagenome; BG12-3 sample; Antarctic (ecotone) soil
480
407
-
Gly
GCC
[ENA]
¢þ
>WENV170999448
MWWK01060199
[MWWK] soil metagenome; BG12-3 sample; Antarctic (ecotone) soil
100
27
-
Gly
GCC
[ENA]
¢þ
>WENV170999492
MWWK01071218
[MWWK] soil metagenome; BG12-3 sample; Antarctic (ecotone) soil
439
364
-
Gly
GCC
[ENA]
¢þ
>WENV170999493
MWWK01071218
[MWWK] soil metagenome; BG12-3 sample; Antarctic (ecotone) soil
93
18
-
Gly
GCC
[ENA]
¢þ
>C181175090
CP029145
Bacteroidota
Hymenobacter nivis NBRC 111535 [CP029145]
4083489
4083564
+
Gly
GCC
-
¡û
>C191087876
CP032317
Bacteroidota
Hymenobacter oligotrophus sh-6 [CP032317]
2555346
2555273
-
Gly
GCC
-
¡û
>C191087877
CP032317
Bacteroidota
Hymenobacter oligotrophus sh-6 [CP032317]
2555128
2555053
-
Gly
GCC
-
¡û
>C191154867
CP037922
Bacteroidota
Hymenobacter radiodurans 17J36-26 [CP037922]
505447
505522
+
Gly
GCC
-
¡û
>W141734703
JNLX01000047
Bacteroidota
Hymenobacter sp. IS2118 [JNLX]
105256
105181
-
Gly
GCC
[ENA]
¡û
>W1910547394
FZNS01000003
Bacteroidota
Hymenobacter mucosus DSM 28041 [FZNS]
651119
651194
+
Gly
GCC
[ENA]
¡û
>W1910651911
LYMU01000127
Bacteroidota
Hymenobacter sp. UV11 [LYMU]
22913
22838
-
Gly
GCC
[ENA]
¡û
>W1810089889
PGFA01000002
Bacteroidota
Hymenobacter chitinivorans DSM 11115 [PGFA]
116038
116113
+
Gly
GCC
[ENA]
¡û
>W1810173081
PJMU01000002
Bacteroidota
Pontibacter ramchanderi LP43 [PJMU]
680306
680233
-
Gly
GCC
[ENA]
¡û
>W1810533427
QCZK01000032
Bacteroidota
Botryobacter ruber KCTC 52794 [QCZK]
66077
66152
+
Gly
GCC
[ENA]
¡û
>W1810572852
QEKI01000001
Bacteroidota
Pontibacter virosus DSM 100231 [QEKI]
487864
487791
-
Gly
GCC
[ENA]
¡û
>W1810625886
QHKM01000002
Bacteroidota
Hymenobacter edaphi NL [QHKM]
582821
582896
+
Gly
GCC
[ENA]
¡û
>W1810625887
QHKM01000002
Bacteroidota
Hymenobacter edaphi NL [QHKM]
583038
583113
+
Gly
GCC
[ENA]
¡û
>W1810678948
QKNS01000001
Bacteroidota
Hymenobacter sediminis ELS1360 [QKNS]
663589
663664
+
Gly
GCC
[ENA]
¡û
>SRA1014178
SRR023845.29244
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
201
126
-
Gly
GCC
[SRA]
>SRA1016280
SRR023846.433817
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
224
149
-
Gly
GCC
[SRA]
>SRA1016547
SRR023846.558063
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
142
67
-
Gly
GCC
[SRA]
>C151009431
CP006587
Bacteroidota
Hymenobacter sp. APR13 [CP006587]
2505653
2505578
-
Gly
GCC
[Ensembl]
¡û
>C151017370
CP007145
Bacteroidota
Hymenobacter swuensis DY53 [CP007145]
4238978
4238903
-
Gly
GCC
[Ensembl]
¡û
>C151063997
CP010054
Bacteroidota
Hymenobacter sp. DG25B [CP010054]
3798948
3798873
-
Gly
GCC
[Ensembl]
¡û
>C151096190
CP012623
Bacteroidota
Hymenobacter sp. DG25A [CP012623]
34584
34659
+
Gly
GCC
-
¡û
>W1511543303
JZIR01000007
Bacteroidota
Hymenobacter sp. AT01-02 [JZIR]
44547
44622
+
Gly
GCC
[ENA]
¡û
>W1511582944
LATM01000009
Bacteroidota
Hymenobacter terrenus MIMtkLc17 [LATM]
117964
117889
-
Gly
GCC
[ENA]
¡û
>C161061575
CP013909
Bacteroidota
Hymenobacter sedentarius DG5B [CP013909]
589439
589364
-
Gly
GCC
[Ensembl]
¡û
>C161070710
CP014304
Bacteroidota
Hymenobacter sp. PAMC 26628 [CP014304]
467629
467704
+
Gly
GCC
[Ensembl]
¡û
>C161077109
CP014771
Bacteroidota
Hymenobacter sp. PAMC 26554 [CP014771]
3527103
3527178
+
Gly
GCC
[Ensembl]
¡û
>W121084756
AKIS01000007
Bacteroidota
Pontibacter sp. BAB1700 [AKIS]
37000
36925
-
Gly
GCC
[ENA]
¡û
>W1610749677
LNAL01000006
Bacteroidota
Solirubrum puertoriconensis MC1A [LNAL]
346480
346555
+
Gly
GCC
[ENA]
¡û
>W1610749678
LNAL01000006
Bacteroidota
Solirubrum puertoriconensis MC1A [LNAL]
346701
346774
+
Gly
GCC
[ENA]
¡û
>W1710553557
FOHS01000001
Bacteroidota
Hymenobacter actinosclerus [FOHS]
394232
394307
+
Gly
GCC
[ENA]
¡û
>W1710573732
FOXS01000002
Bacteroidota
Hymenobacter arizonensis [FOXS]
1087914
1087989
+
Gly
GCC
[ENA]
¡û
>W1710587482
FQYN01000009
Bacteroidota
Hymenobacter daecheongensis DSM 21074 [FQYN]
124832
124905
+
Gly
GCC
[ENA]
¡û
>W1710590112
FRAS01000012
Bacteroidota
Hymenobacter psychrotolerans DSM 18569 [FRAS]
68129
68204
+
Gly
GCC
[ENA]
¡û
>W1710597866
FTNM01000001
Bacteroidota
Pontibacter lucknowensis [FTNM]
735361
735286
-
Gly
GCC
[ENA]
¡û
>W1710600016
FTPP01000002
Bacteroidota
Pontibacter indicus [FTPP]
656922
656997
+
Gly
GCC
[ENA]
¡û
>W1710605414
FWWW01000070
Bacteroidota
Hymenobacter roseosalivarius DSM 11622 [FWWW]
17614
17689
+
Gly
GCC
[ENA]
¡û
>W1710610173
FYEW01000002
Bacteroidota
Hymenobacter gelipurpurascens [FYEW]
835755
835680
-
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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