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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238850 (17 seq.)
>W1712105595
NIRR01000106
Bacteroidota
Hymenobacter amundsenii CCM 8682 [NIRR]
195
269
+
Ile
GAT
[ENA]
¡û
>WENV181304840
OFID01001332
[OFID] marine metagenome; sea ice
276
350
+
Ile
GAT
[ENA]
¢þ
>W141151931
AXBK01000007
Bacteroidota
Adhaeribacter aquaticus DSM 16391 [AXBK]
208680
208606
-
Ile
GAT
[ENA]
¡û
>C181175112
CP029145
Bacteroidota
Hymenobacter nivis NBRC 111535 [CP029145]
2138132
2138058
-
Ile
GAT
-
¡û
>C181193424
CP030850
Bacteroidota
Runella rosea HYN0085 [CP030850]
5962102
5962176
+
Ile
GAT
-
¡û
>C191073391
CP031030
Bacteroidota
Runella sp. SP2 [CP031030]
7121349
7121423
+
Ile
GAT
-
¡û
>W1911788171
QYCN01000074
Bacteroidota
Hymenobacter rubripertinctus CCM 8852 [QYCN]
2394
2468
+
Ile
GAT
[ENA]
¡û
>W1810400070
PYFT01000001
Bacteroidota
Adhaeribacter arboris HMF7605 [PYFT]
3381680
3381606
-
Ile
GAT
[ENA]
¡û
>W1810400079
PYFT01000001
Bacteroidota
Adhaeribacter arboris HMF7605 [PYFT]
2178264
2178190
-
Ile
GAT
[ENA]
¡û
>W1810678989
QKNS01000028
Bacteroidota
Hymenobacter sediminis ELS1360 [QKNS]
225
299
+
Ile
GAT
[ENA]
¡û
>W1810912403
QVLT01000073
Bacteroidota
Hymenobacter sp. CCM 8763 [QVLT]
411
337
-
Ile
GAT
[ENA]
¡û
>SRA1015361
SRR023846.30183
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
215
141
-
Ile
GAT
[SRA]
>SRA1016359
SRR023846.464443
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
179
253
+
Ile
GAT
[SRA]
>C151096197
CP012623
Bacteroidota
Hymenobacter sp. DG25A [CP012623]
761544
761618
+
Ile
GAT
-
¡û
>C151096216
CP012623
Bacteroidota
Hymenobacter sp. DG25A [CP012623]
2800815
2800741
-
Ile
GAT
-
¡û
>C11118900
CP002859
Bacteroidota
Runella slithyformis DSM 19594 [CP002859]
1932833
1932759
-
Ile
GAT
[Ensembl]
¡û
>C11118906
CP002859
Bacteroidota
Runella slithyformis DSM 19594 [CP002859]
243734
243660
-
Ile
GAT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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