This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238855 (67 seq.)
>W1710809737
LKEU01000012
Bacillota
Acetobacterium wieringae [LKEU]
347
422
+
Lys
TTT
[ENA]
¡û
>W1710809743
LKEU01000014
Bacillota
Acetobacterium wieringae [LKEU]
1083
1158
+
Lys
TTT
[ENA]
¡û
>W1710809769
LKEU01000033
Bacillota
Acetobacterium wieringae [LKEU]
28463
28388
-
Lys
TTT
[ENA]
¡û
>W1711434407
MIMZ01000006
Bacillota
[Butyribacterium] methylotrophicum [MIMZ]
20673
20598
-
Lys
TTT
[ENA]
¡û
>W1711434413
MIMZ01000009
Bacillota
[Butyribacterium] methylotrophicum [MIMZ]
656
731
+
Lys
TTT
[ENA]
¡û
>W1711434427
MIMZ01000017
Bacillota
[Butyribacterium] methylotrophicum [MIMZ]
285955
285880
-
Lys
TTT
[ENA]
¡û
>C171101789
CP019962
Bacillota
Eubacterium limosum ATCC 8486 [CP019962]
2651779
2651854
+
Lys
TTT
-
¡û
>C171101796
CP019962
Bacillota
Eubacterium limosum ATCC 8486 [CP019962]
2677754
2677829
+
Lys
TTT
-
¡û
>C171101811
CP019962
Bacillota
Eubacterium limosum ATCC 8486 [CP019962]
3087488
3087563
+
Lys
TTT
-
¡û
>WENV180149284
OAUK01055403
[OAUK] human gut metagenome; faeces
86
161
+
Lys
TTT
[ENA]
¢þ
>WENV180176425
OAWD01000106
[OAWD] human gut metagenome; faeces
176
251
+
Lys
TTT
[ENA]
¢þ
>WENV180176842
OAWD01002138
[OAWD] human gut metagenome; faeces
1864
1789
-
Lys
TTT
[ENA]
¢þ
>WENV180176944
OAWD01005555
[OAWD] human gut metagenome; faeces
2
77
+
Lys
TTT
[ENA]
¢þ
>WENV180498551
OCAG01000396
[OCAG] human gut metagenome; faeces
1855
1780
-
Lys
TTT
[ENA]
¢þ
>WENV180498555
OCAG01000403
[OCAG] human gut metagenome; faeces
32339
32264
-
Lys
TTT
[ENA]
¢þ
>WENV180498679
OCAG01000876
[OCAG] human gut metagenome; faeces
12843
12768
-
Lys
TTT
[ENA]
¢þ
>WENV180504425
OCAN01002669
[OCAN] human gut metagenome; faeces
4687
4762
+
Lys
TTT
[ENA]
¢þ
>W141150081
AXAC01000022
Bacillota
Acetobacterium dehalogenans DSM 11527 [AXAC]
614
689
+
Lys
TTT
[ENA]
¡û
>W141150093
AXAC01000033
Bacillota
Acetobacterium dehalogenans DSM 11527 [AXAC]
55988
55913
-
Lys
TTT
[ENA]
¡û
>W141150103
AXAC01000035
Bacillota
Acetobacterium dehalogenans DSM 11527 [AXAC]
30456
30381
-
Lys
TTT
[ENA]
¡û
>WENV181865657
OGWU01061331
[OGWU] human gut metagenome; faeces
70
145
+
Lys
TTT
[ENA]
¢þ
>WENV182403116
OIET01000821
[OIET] human gut metagenome; human gut
20406
20331
-
Lys
TTT
[ENA]
¢þ
>WENV182403353
OIET01003179
[OIET] human gut metagenome; human gut
77
2
-
Lys
TTT
[ENA]
¢þ
>WENV182403400
OIET01004348
[OIET] human gut metagenome; human gut
1
76
+
Lys
TTT
[ENA]
¢þ
>WENV182405349
OIEV01003345
[OIEV] human gut metagenome; human gut
3787
3862
+
Lys
TTT
[ENA]
¢þ
>WENV182405363
OIEV01003504
[OIEV] human gut metagenome; human gut
655
730
+
Lys
TTT
[ENA]
¢þ
>WENV182817066
OJZH01008980
[OJZH] human gut metagenome; human gut
368
443
+
Lys
TTT
[ENA]
¢þ
>WENV182836557
OKFX01005194
[OKFX] human gut metagenome; human gut
760
835
+
Lys
TTT
[ENA]
¢þ
>WENV182892274
OKSH01052777
[OKSH] human gut metagenome; faeces
409
334
-
Lys
TTT
[ENA]
¢þ
>WENV170692235
LGOV01001494
[LGOV] marine sediment metagenome; sample #5579, elevator 3A push core 41 containing 12 cm of sediment, collected at Hydrate Ridge
5446
5371
-
Lys
TTT
[ENA]
¢þ
>WENV170692555
LGOV01013446
[LGOV] marine sediment metagenome; sample #5579, elevator 3A push core 41 containing 12 cm of sediment, collected at Hydrate Ridge
18183
18258
+
Lys
TTT
[ENA]
¢þ
>C191064415
CP029487
Bacillota
Eubacterium maltosivorans YI [CP029487]
3776725
3776800
+
Lys
TTT
-
¡û
>C191064424
CP029487
Bacillota
Eubacterium maltosivorans YI [CP029487]
3802789
3802864
+
Lys
TTT
-
¡û
>C191064436
CP029487
Bacillota
Eubacterium maltosivorans YI [CP029487]
4284136
4284211
+
Lys
TTT
-
¡û
>C191219490
LR215983
Bacillota
Eubacterium limosum [LR215983]
267829
267904
+
Lys
TTT
-
¡û
>C191219497
LR215983
Bacillota
Eubacterium limosum [LR215983]
293606
293681
+
Lys
TTT
-
¡û
>C191219509
LR215983
Bacillota
Eubacterium limosum [LR215983]
734091
734166
+
Lys
TTT
-
¡û
>W1810609737
QGUD01000001
Bacillota
Eubacterium limosum 8486cho [QGUD]
20726
20651
-
Lys
TTT
[ENA]
¡û
>W1810609755
QGUD01000004
Bacillota
Eubacterium limosum 8486cho [QGUD]
393508
393433
-
Lys
TTT
[ENA]
¡û
>W1810871706
QUDF01000002
Bacillota
Eubacterium sp. AM05-23 [QUDF]
189
264
+
Lys
TTT
[ENA]
¡û
>W1810871735
QUDF01000007
Bacillota
Eubacterium sp. AM05-23 [QUDF]
254393
254468
+
Lys
TTT
[ENA]
¡û
>C11108808
CP002273
Bacillota
Eubacterium callanderi KIST612 [CP002273]
923362
923437
+
Lys
TTT
[Ensembl]
¡û
>C11108815
CP002273
Bacillota
Eubacterium callanderi KIST612 [CP002273]
949275
949350
+
Lys
TTT
[Ensembl]
¡û
>C11108850
CP002273
Bacillota
Eubacterium callanderi KIST612 [CP002273]
2688848
2688773
-
Lys
TTT
[Ensembl]
¡û
>W1511480171
JWIS01000016
Bacillota
Eubacterium limosum ATCC 8480 [JWIS]
80868
80793
-
Lys
TTT
[ENA]
¡û
>W1511480180
JWIS01000018
Bacillota
Eubacterium limosum ATCC 8480 [JWIS]
20584
20509
-
Lys
TTT
[ENA]
¡û
>W1511480185
JWIS01000020
Bacillota
Eubacterium limosum ATCC 8480 [JWIS]
93151
93076
-
Lys
TTT
[ENA]
¡û
>C121003887
CP002987
Bacillota
Acetobacterium woodii DSM 1030 [CP002987]
358008
358083
+
Lys
TTT
[Ensembl]
¡û
>C121003913
CP002987
Bacillota
Acetobacterium woodii DSM 1030 [CP002987]
3339906
3339831
-
Lys
TTT
[Ensembl]
¡û
>C121003937
CP002987
Bacillota
Acetobacterium woodii DSM 1030 [CP002987]
2814990
2814915
-
Lys
TTT
[Ensembl]
¡û
>C161037802
CP011914
Bacillota
Eubacterium limosum SA11 [CP011914]
3274170
3274095
-
Lys
TTT
[Ensembl]
¡û
>C161037811
CP011914
Bacillota
Eubacterium limosum SA11 [CP011914]
3248047
3247972
-
Lys
TTT
[Ensembl]
¡û
>C161037823
CP011914
Bacillota
Eubacterium limosum SA11 [CP011914]
2825046
2824971
-
Lys
TTT
[Ensembl]
¡û
>W1710525052
FNJF01000028
Bacillota
Eubacterium maltosivorans limosum [FNJF]
20595
20520
-
Lys
TTT
[ENA]
¡û
>W1710525061
FNJF01000043
Bacillota
Eubacterium maltosivorans limosum [FNJF]
12352
12277
-
Lys
TTT
[ENA]
¡û
>W1710530501
FNOU01000002
Bacillota
Eubacterium barkeri [FNOU]
45882
45807
-
Lys
TTT
[ENA]
¡û
>W1710530530
FNOU01000019
Bacillota
Eubacterium barkeri [FNOU]
62304
62229
-
Lys
TTT
[ENA]
¡û
>W1710533800
FNRK01000006
Bacillota
Eubacterium aggregans [FNRK]
140770
140695
-
Lys
TTT
[ENA]
¡û
>W1710533805
FNRK01000010
Bacillota
Eubacterium aggregans [FNRK]
36937
36862
-
Lys
TTT
[ENA]
¡û
>W1710533824
FNRK01000039
Bacillota
Eubacterium aggregans [FNRK]
11237
11162
-
Lys
TTT
[ENA]
¡û
>W1710571959
FOWI01000001
Bacillota
Eubacterium callanderi [FOWI]
701311
701386
+
Lys
TTT
[ENA]
¡û
>W1710571974
FOWI01000006
Bacillota
Eubacterium callanderi [FOWI]
682
757
+
Lys
TTT
[ENA]
¡û
>W1710571986
FOWI01000008
Bacillota
Eubacterium callanderi [FOWI]
682
757
+
Lys
TTT
[ENA]
¡û
>W1710571989
FOWI01000008
Bacillota
Eubacterium callanderi [FOWI]
984
1059
+
Lys
TTT
[ENA]
¡û
>W1710591282
FRBP01000004
Bacillota
Eubacterium callanderi [FRBP]
357
432
+
Lys
TTT
[ENA]
¡û
>W1710591301
FRBP01000009
Bacillota
Eubacterium callanderi [FRBP]
200402
200477
+
Lys
TTT
[ENA]
¡û
>W1710591310
FRBP01000012
Bacillota
Eubacterium callanderi [FRBP]
172686
172611
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK