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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238856 (32 seq.)
>W1711434411
MIMZ01000009
Bacillota
[Butyribacterium] methylotrophicum [MIMZ]
477
552
+
Thr
TGT
[ENA]
¡û
>W1711434428
MIMZ01000017
Bacillota
[Butyribacterium] methylotrophicum [MIMZ]
285832
285757
-
Thr
TGT
[ENA]
¡û
>C171101797
CP019962
Bacillota
Eubacterium limosum ATCC 8486 [CP019962]
2678000
2678075
+
Thr
TGT
-
¡û
>C171101809
CP019962
Bacillota
Eubacterium limosum ATCC 8486 [CP019962]
3087309
3087384
+
Thr
TGT
-
¡û
>WENV180176426
OAWD01000106
[OAWD] human gut metagenome; faeces
299
374
+
Thr
TGT
[ENA]
¢þ
>WENV180498680
OCAG01000876
[OCAG] human gut metagenome; faeces
12720
12645
-
Thr
TGT
[ENA]
¢þ
>WENV180504707
OCAN01037499
[OCAN] human gut metagenome; faeces
99
174
+
Thr
TGT
[ENA]
¢þ
>W08006036
ABIL02000004
Bacillota
Anaerofustis stercorihominis DSM 17244 [ABIL]
174477
174405
-
Thr
TGT
[ENA]
¡û
>WENV182403185
OIET01001236
[OIET] human gut metagenome; human gut
12816
12741
-
Thr
TGT
[ENA]
¢þ
>WENV182405361
OIEV01003504
[OIEV] human gut metagenome; human gut
476
551
+
Thr
TGT
[ENA]
¢þ
>WENV183746768
PPCM01000005
[PPCM] marine sediment metagenome; marine sediment
270145
270070
-
Thr
TGT
[ENA]
¢þ
>WENV170443875
CEUX01026666
[CEUX] marine metagenome genome assembly TARA_123_MIX_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1353
1281
-
Thr
TGT
[ENA]
¢þ
>C191064422
CP029487
Bacillota
Eubacterium maltosivorans YI [CP029487]
3802610
3802685
+
Thr
TGT
-
¡û
>C191064425
CP029487
Bacillota
Eubacterium maltosivorans YI [CP029487]
3803049
3803124
+
Thr
TGT
-
¡û
>C191219498
LR215983
Bacillota
Eubacterium limosum [LR215983]
293970
294045
+
Thr
TGT
-
¡û
>C191219507
LR215983
Bacillota
Eubacterium limosum [LR215983]
733912
733987
+
Thr
TGT
-
¡û
>W1810609753
QGUD01000004
Bacillota
Eubacterium limosum 8486cho [QGUD]
393687
393612
-
Thr
TGT
[ENA]
¡û
>W1810871704
QUDF01000002
Bacillota
Eubacterium sp. AM05-23 [QUDF]
10
85
+
Thr
TGT
[ENA]
¡û
>W1810871707
QUDF01000002
Bacillota
Eubacterium sp. AM05-23 [QUDF]
449
524
+
Thr
TGT
[ENA]
¡û
>W1810889469
QUSM01000002
Bacillota
Anaerofustis stercorihominis AM25-6 [QUSM]
773056
773131
+
Thr
TGT
[ENA]
¡û
>C11108816
CP002273
Bacillota
Eubacterium callanderi KIST612 [CP002273]
949398
949473
+
Thr
TGT
[Ensembl]
¡û
>C11108848
CP002273
Bacillota
Eubacterium callanderi KIST612 [CP002273]
2689027
2688952
-
Thr
TGT
[Ensembl]
¡û
>W1511480172
JWIS01000016
Bacillota
Eubacterium limosum ATCC 8480 [JWIS]
80622
80547
-
Thr
TGT
[ENA]
¡û
>W1511480183
JWIS01000020
Bacillota
Eubacterium limosum ATCC 8480 [JWIS]
93330
93255
-
Thr
TGT
[ENA]
¡û
>C161037809
CP011914
Bacillota
Eubacterium limosum SA11 [CP011914]
3248226
3248151
-
Thr
TGT
[Ensembl]
¡û
>C161037812
CP011914
Bacillota
Eubacterium limosum SA11 [CP011914]
3247787
3247712
-
Thr
TGT
[Ensembl]
¡û
>W1710525063
FNJF01000058
Bacillota
Eubacterium maltosivorans limosum [FNJF]
5125
5050
-
Thr
TGT
[ENA]
¡û
>W1710533831
FNRK01000065
Bacillota
Eubacterium aggregans [FNRK]
366
291
-
Thr
TGT
[ENA]
¡û
>W1710571975
FOWI01000006
Bacillota
Eubacterium callanderi [FOWI]
805
880
+
Thr
TGT
[ENA]
¡û
>W1710571987
FOWI01000008
Bacillota
Eubacterium callanderi [FOWI]
805
880
+
Thr
TGT
[ENA]
¡û
>W1710591283
FRBP01000004
Bacillota
Eubacterium callanderi [FRBP]
480
555
+
Thr
TGT
[ENA]
¡û
>W1710591308
FRBP01000012
Bacillota
Eubacterium callanderi [FRBP]
172865
172790
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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