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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238915 (20 seq.)
>W131231062
AUID01000042
Bacillota
Proteocatella sphenisci DSM 23131 [AUID]
2678
2602
-
Met
CAT
[ENA]
¡û
>C000798
CP000724
Bacillota
Alkaliphilus metalliredigens QYMF [CP000724]
1842650
1842726
+
Met
CAT
[Ensembl]
¡û
>C000843
CP000724
Bacillota
Alkaliphilus metalliredigens QYMF [CP000724]
4444946
4444870
-
Met
CAT
[Ensembl]
¡û
>C000863
CP000724
Bacillota
Alkaliphilus metalliredigens QYMF [CP000724]
4436352
4436276
-
Met
CAT
[Ensembl]
¡û
>w010480
AAKU01000254
Bacillota
Alkaliphilus metalliredigens QYMF [AAKU]
118
40
-
Met
CAT
[ENA]
¡û
>w010457
AAKU01000209
Bacillota
Alkaliphilus metalliredigens QYMF [AAKU]
2639
2717
+
Met
CAT
[ENA]
¡û
>w010437
AAKU01000148
Bacillota
Alkaliphilus metalliredigens QYMF [AAKU]
6547
6625
+
Met
CAT
[ENA]
¡û
>w010396
AAKU01000026
Bacillota
Alkaliphilus metalliredigens QYMF [AAKU]
1155
1233
+
Met
CAT
[ENA]
¡û
>C171064248
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
2590237
2590313
+
Met
CAT
-
¡û
>C171064270
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
2612051
2612127
+
Met
CAT
-
¡û
>C171064340
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
702177
702101
-
Met
CAT
-
¡û
>C171064357
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
689177
689101
-
Met
CAT
-
¡û
>WENV181481250
OGFI01000976
[OGFI] metagenome; Human gut stool
14916
14992
+
Met
CAT
[ENA]
¢þ
>WENV182698968
OJON01001465
[OJON] human gut metagenome; human gut
139
215
+
Met
CAT
[ENA]
¢þ
>WENV183151901
OLOQ01001138
[OLOQ] human gut metagenome; faeces
24775
24851
+
Met
CAT
[ENA]
¢þ
>WENV183199661
OLPW01000085
[OLPW] human gut metagenome; faeces
77642
77566
-
Met
CAT
[ENA]
¢þ
>WENV183277306
OLSA01000413
[OLSA] human gut metagenome; faeces
36008
36084
+
Met
CAT
[ENA]
¢þ
>WENV183541007
OOAK01001634
[OOAK] human gut metagenome; human gut
6729
6653
-
Met
CAT
[ENA]
¢þ
>WENV170108225
CECA01018488
[CECA] gut metagenome; human stools
2324
2248
-
Met
CAT
[ENA]
¢þ
>C151057227
CP009687
Bacillota
Clostridium aceticum DSM 1496 [CP009687]
1166821
1166897
+
Met
CAT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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