This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238921 (51 seq.)
>W1711003319
LQGY01000060
Actinomycetota
Agromyces sp. NDB4Y10 [LQGY]
16802
16729
-
Val
TAC
[ENA]
¡û
>W1711018569
LQXA01000035
Actinomycetota
Clavibacter michiganensis subsp. tessellarius [LQXA]
204691
204616
-
Val
TAC
[ENA]
¡û
>W1711079600
LSOE01000006
Actinomycetota
Clavibacter nebraskensis subsp. nebraskensis [LSOE]
101670
101745
+
Val
TAC
[ENA]
¡û
>W1711357187
MDHB01000002
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHB]
535294
535219
-
Val
TAC
[ENA]
¡û
>W1711357218
MDHC01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHC]
1812167
1812242
+
Val
TAC
[ENA]
¡û
>W1711357251
MDHD01000028
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHD]
59850
59925
+
Val
TAC
[ENA]
¡û
>W1711357327
MDHE01000394
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHE]
42197
42272
+
Val
TAC
[ENA]
¡û
>W1711357339
MDHF01000017
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHF]
9184
9109
-
Val
TAC
[ENA]
¡û
>W1711357383
MDHG01000002
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHG]
198525
198600
+
Val
TAC
[ENA]
¡û
>W1711357457
MDHH01000005
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHH]
46244
46319
+
Val
TAC
[ENA]
¡û
>W1711357487
MDHI01000004
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHI]
1391104
1391179
+
Val
TAC
[ENA]
¡û
>W1711357586
MDHK01000042
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHK]
83382
83457
+
Val
TAC
[ENA]
¡û
>W1711357623
MDHL01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHL]
1857051
1857126
+
Val
TAC
[ENA]
¡û
>W1711357667
MDHM01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHM]
1822409
1822484
+
Val
TAC
[ENA]
¡û
>W1711360811
MDJY01000059
Actinomycetota
Clavibacter michiganensis [MDJY]
35876
35951
+
Val
TAC
[ENA]
¡û
>C171036911
CP015208
Actinomycetota
Candidatus Rhodoluna planktonica MWH-Dar1 [CP015208]
625569
625642
+
Val
TAC
-
¡û
>C171111604
CP020715
Actinomycetota
Cnuibacter physcomitrellae [CP020715]
2103148
2103073
-
Val
TAC
-
¡û
>C006149
AM711867
Actinomycetota
Clavibacter michiganensis subsp. michiganensis NCPPB 382 [AM711867]
1838068
1838143
+
Val
TAC
[Ensembl]
¡û
>WENV180110624
OAPN01001494
[OAPN] marine metagenome; 2011
350
277
-
Val
TAC
[ENA]
¢þ
>WENV180391611
OBPN01011944
[OBPN] marine metagenome; seawater
638
565
-
Val
TAC
[ENA]
¢þ
>WENV180395695
OBPT01083322
[OBPT] marine metagenome; ENVO:00002010 seawater
297
370
+
Val
TAC
[ENA]
¢þ
>WENV180691331
OCZS010102008
[OCZS] soil metagenome; soil
736
811
+
Val
TAC
[ENA]
¢þ
>WENV181840198
OGVO01051923
[OGVO] freshwater metagenome; freshwater
262
189
-
Val
TAC
[ENA]
¢þ
>W141212805
AZQZ01000045
Actinomycetota
Clavibacter michiganensis michiganensis LMG 26808 [AZQZ]
406515
406440
-
Val
TAC
[ENA]
¡û
>C08003552
AM849034
Actinomycetota
Clavibacter michiganensis subsp. sepedonicus ATCC 33113 [AM849034]
1690791
1690866
+
Val
TAC
[Ensembl]
¡û
>WENV170606208
FUWD010631698
[FUWD] metagenome; unknown
278
205
-
Val
TAC
[ENA]
¢þ
>C191130413
CP034753
Actinomycetota
Agromyces sp. LHK192 [CP034753]
1993172
1993246
+
Val
TAC
-
¡û
>C191143835
CP035491
Actinomycetota
Agromyces protaetiae FW100M-8 [CP035491]
2767267
2767194
-
Val
TAC
-
¡û
>W1910839657
MZMM01000001
Actinomycetota
Clavibacter sepedonicus subsp. sepedonicus CFIA-Cs3N [MZMM]
691309
691383
+
Val
TAC
[ENA]
¡û
>W1910839700
MZMN01000003
Actinomycetota
Clavibacter sepedonicus subsp. sepedonicus CFIA-CsR14 [MZMN]
307105
307179
+
Val
TAC
[ENA]
¡û
>W1910839811
MZMP01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis LMG 7333 [MZMP]
2525991
2525918
-
Val
TAC
[ENA]
¡û
>W1910839854
MZMQ01000001
Actinomycetota
Clavibacter michiganensis subsp. tessellarius ATCC 33566 [MZMQ]
2636031
2635957
-
Val
TAC
[ENA]
¡û
>W1911685507
QKTL01000005
Actinomycetota
Curtobacterium sp. MCBD17_040 [QKTL]
7209
7135
-
Val
TAC
[ENA]
¡û
>W1911685544
QKTM01000001
Actinomycetota
Curtobacterium sp. MCBD17_035 [QKTM]
251530
251456
-
Val
TAC
[ENA]
¡û
>W1911685596
QKTN01000002
Actinomycetota
Curtobacterium sp. MCBD17_034 [QKTN]
226775
226701
-
Val
TAC
[ENA]
¡û
>W1911685692
QKTP01000003
Actinomycetota
Curtobacterium sp. MCBD17_003 [QKTP]
364992
365066
+
Val
TAC
[ENA]
¡û
>W1911685722
QKTQ01000001
Actinomycetota
Curtobacterium sp. MCBD17_028 [QKTQ]
228169
228095
-
Val
TAC
[ENA]
¡û
>W1911685885
QKTT01000010
Actinomycetota
Curtobacterium sp. MCBD17_019 [QKTT]
7096
7022
-
Val
TAC
[ENA]
¡û
>W1911685901
QKTU01000001
Actinomycetota
Curtobacterium sp. MCBD17_013 [QKTU]
329806
329880
+
Val
TAC
[ENA]
¡û
>W1911686065
QKVS01000001
Actinomycetota
Curtobacterium sp. MCBD17_031 [QKVS]
226772
226698
-
Val
TAC
[ENA]
¡û
>W1911748275
QWEC01000059
Actinomycetota
Clavibacter michiganensis CFBP 7493 [QWEC]
12248
12322
+
Val
TAC
[ENA]
¡û
>W1810277417
PSTV01000017
Actinomycetota
Clavibacter michiganensis Z002 [PSTV]
34768
34841
+
Val
TAC
[ENA]
¡û
>W1810277468
PSTW01000021
Actinomycetota
Clavibacter michiganensis Z001 [PSTW]
51301
51374
+
Val
TAC
[ENA]
¡û
>W1610050180
BBFP01000003
Actinomycetota
Agromyces ulmi JCM 13315 [BBFP]
848
923
+
Val
TAC
[ENA]
¡û
>W1610069873
BCSV01000004
Actinomycetota
Curtobacterium ammoniigenes NBRC 101786 [BCSV]
98310
98237
-
Val
TAC
[ENA]
¡û
>W1610738402
LMOX01000001
Actinomycetota
Frigoribacterium sp. Leaf164 [LMOX]
1178616
1178691
+
Val
TAC
[ENA]
¡û
>W1610853884
LQGY01000060
Actinomycetota
Agromyces sp. NDB4Y10 [LQGY]
16802
16729
-
Val
TAC
[ENA]
¡û
>W1610867045
LQXA01000035
Actinomycetota
Clavibacter michiganensis subsp. tessellarius [LQXA]
204691
204616
-
Val
TAC
[ENA]
¡û
>W1710046579
BBFP01000003
Actinomycetota
Agromyces ulmi JCM 13315 [BBFP]
848
923
+
Val
TAC
[ENA]
¡û
>W1710067246
BCSV01000004
Actinomycetota
Curtobacterium ammoniigenes NBRC 101786 [BCSV]
98310
98237
-
Val
TAC
[ENA]
¡û
>W1710604651
FVZG01000001
Actinomycetota
Clavibacter michiganensis [FVZG]
1613049
1613124
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK