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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.239000 (36 seq.)
>W1711312282
MASS01000098
Bacillota
Desulfosporosinus sp. BG [MASS]
6255
6330
+
Thr
GGT
[ENA]
¡û
>W1711510593
MLBF01000097
Bacillota
Desulfosporosinus metallidurans OL [MLBF]
5893
5968
+
Thr
GGT
[ENA]
¡û
>W1711926254
NADJ01000003
Bacillota
Desulfosporosinus sp. FKB [NADJ]
6494
6569
+
Thr
GGT
[ENA]
¡û
>W1711926286
NADJ01000038
Bacillota
Desulfosporosinus sp. FKB [NADJ]
121708
121633
-
Thr
GGT
[ENA]
¡û
>W1711932740
NAHZ01000019
Bacillota
Desulfosporosinus sp. FKA [NAHZ]
1297
1222
-
Thr
GGT
[ENA]
¡û
>W1711932768
NAHZ01000033
Bacillota
Desulfosporosinus sp. FKA [NAHZ]
184023
184098
+
Thr
GGT
[ENA]
¡û
>WENV180263123
OBEQ011446696
[OBEQ] groundwater metagenome; groundwater
387
312
-
Thr
GGT
[ENA]
¢þ
>WENV182020116
OHBZ01020088
[OHBZ] human gut metagenome; feces
138
213
+
Thr
GGT
[ENA]
¢þ
>WENV170658861
JUEG02001262
[JUEG] rock porewater metagenome; Opalinus Clay rock BIC-A1 borehole
1771
1696
-
Thr
GGT
[ENA]
¢þ
>WENV170658890
JUEG02001293
[JUEG] rock porewater metagenome; Opalinus Clay rock BIC-A1 borehole
22316
22391
+
Thr
GGT
[ENA]
¢þ
>WENV170784329
MCHG01000828
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
5485
5560
+
Thr
GGT
[ENA]
¢þ
>W1810047160
OMOF01000012
Bacillota
Candidatus Desulfosporosinus infrequens SbF1 Peat soil MAG SbF1 [OMOF]
5220
5295
+
Thr
GGT
[ENA]
¡û
>C151016335
CP007032
Bacillota
Desulfitobacterium metallireducens DSM 15288 853-15A [CP007032]
2174253
2174178
-
Thr
GGT
[Ensembl]
¡û
>C151016349
CP007032
Bacillota
Desulfitobacterium metallireducens DSM 15288 853-15A [CP007032]
2172496
2172421
-
Thr
GGT
[Ensembl]
¡û
>W1511187150
JMGA01000078
Bacillota
Desulfosporosinus sp. HMP52 [JMGA]
22290
22365
+
Thr
GGT
[ENA]
¡û
>W1511187162
JMGA01000080
Bacillota
Desulfosporosinus sp. HMP52 [JMGA]
944
1019
+
Thr
GGT
[ENA]
¡û
>W1511327359
JQID01000098
Bacillota
Desulfosporosinus sp. Tol-M [JQID]
2755
2680
-
Thr
GGT
[ENA]
¡û
>W1511533700
JYNH01000154
Bacillota
Desulfosporosinus sp. I2 [JYNH]
9807
9882
+
Thr
GGT
[ENA]
¡û
>W1511645993
LDZY01000001
Bacillota
Desulfosporosinus acididurans M1 [LDZY]
70470
70395
-
Thr
GGT
[ENA]
¡û
>W1511646044
LDZY01000036
Bacillota
Desulfosporosinus acididurans M1 [LDZY]
5254
5329
+
Thr
GGT
[ENA]
¡û
>W11177299
AGAF01000251
Bacillota
Desulfosporosinus sp. OT [AGAF]
1313
1238
-
Thr
GGT
[ENA]
¡û
>W11181326
AGJA01000001
Bacillota
Desulfosporosinus meridiei DSM 13257 [AGJA]
111861
111786
-
Thr
GGT
[ENA]
¡û
>W11181375
AGJA01000017
Bacillota
Desulfosporosinus meridiei DSM 13257 [AGJA]
1663
1588
-
Thr
GGT
[ENA]
¡û
>W11181432
AGJB01000029
Bacillota
Desulfitobacterium metallireducens DSM 15288 [AGJB]
976
901
-
Thr
GGT
[ENA]
¡û
>C121005934
CP003108
Bacillota
Desulfosporosinus orientis DSM 765 [CP003108]
108471
108546
+
Thr
GGT
[Ensembl]
¡û
>C121014774
CP003629
Bacillota
Desulfosporosinus meridiei DSM 13257 [CP003629]
102461
102536
+
Thr
GGT
[Ensembl]
¡û
>C121014824
CP003629
Bacillota
Desulfosporosinus meridiei DSM 13257 [CP003629]
3014903
3014828
-
Thr
GGT
[Ensembl]
¡û
>C121014851
CP003639
Bacillota
Desulfosporosinus acidiphilus SJ4 [CP003639]
103798
103873
+
Thr
GGT
[Ensembl]
¡û
>C121014888
CP003639
Bacillota
Desulfosporosinus acidiphilus SJ4 [CP003639]
2952622
2952547
-
Thr
GGT
[Ensembl]
¡û
>W121010464
AGJG01000012
Bacillota
Desulfosporosinus acidiphilus SJ4 [AGJG]
133773
133698
-
Thr
GGT
[ENA]
¡û
>W121010494
AGJG01000050
Bacillota
Desulfosporosinus acidiphilus SJ4 [AGJG]
3574
3649
+
Thr
GGT
[ENA]
¡û
>W121036124
AHLV01000001
Bacillota
Desulfosporosinus youngiae DSM 17734 [AHLV]
124978
125053
+
Thr
GGT
[ENA]
¡û
>W121036164
AHLV01000002
Bacillota
Desulfosporosinus youngiae DSM 17734 [AHLV]
1195889
1195814
-
Thr
GGT
[ENA]
¡û
>W1710516488
FNCP01000032
Bacillota
Desulfosporosinus hippei DSM 8344 [FNCP]
48782
48707
-
Thr
GGT
[ENA]
¡û
>W1710516512
FNCP01000054
Bacillota
Desulfosporosinus hippei DSM 8344 [FNCP]
1627
1552
-
Thr
GGT
[ENA]
¡û
>W1710586654
FQXJ01000018
Bacillota
Desulfosporosinus lacus DSM 15449 [FQXJ]
29431
29506
+
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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