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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.239037 (80 seq.)
>W1710856797
LLZQ01000006
Alphaproteobacteria
Novosphingobium sp. FSW06-99 [LLZQ]
151099
151024
-
Lys
TTT
[ENA]
¡û
>W1710856866
LLZR01000021
Alphaproteobacteria
Novosphingobium sp. Fuku2-ISO-50 [LLZR]
164
89
-
Lys
TTT
[ENA]
¡û
>W1710870812
LMKV01000001
Alphaproteobacteria
Sphingobium sp. Leaf26 [LMKV]
150465
150540
+
Lys
TTT
[ENA]
¡û
>W1711082179
LSTR01000022
Alphaproteobacteria
Sphingobium yanoikuyae [LSTR]
190220
190145
-
Lys
TTT
[ENA]
¡û
>W1711083847
LSVG01000009
Alphaproteobacteria
Sphingobium yanoikuyae [LSVG]
54394
54319
-
Lys
TTT
[ENA]
¡û
>W1711146775
LVJD01000231
Alphaproteobacteria
Sphingobium yanoikuyae [LVJD]
5076
5151
+
Lys
TTT
[ENA]
¡û
>W1711387017
MEGC01000050
Alphaproteobacteria
Novosphingobium sp. SCN 63-17 [MEGC]
29170
29245
+
Lys
TTT
[ENA]
¡û
>W1711421955
MIAI01000101
Alphaproteobacteria
Sphingomonadales bacterium GWF1_63_6 [MIAI]
11403
11478
+
Lys
TTT
[ENA]
¡û
>W1711505651
MKVS01000044
Alphaproteobacteria
Novosphingobium sp. 63-713 [MKVS]
29348
29423
+
Lys
TTT
[ENA]
¡û
>W1711506386
MKWI01000035
Alphaproteobacteria
Sphingobium sp. 66-54 [MKWI]
31906
31981
+
Lys
TTT
[ENA]
¡û
>W1712076966
NGUN01000003
Alphaproteobacteria
Sphingobium sp. GW456-12-10-14-TSB1 [NGUN]
1516194
1516269
+
Lys
TTT
[ENA]
¡û
>C171049884
CP016456
Alphaproteobacteria
Sphingobium sp. RAC03 [CP016456]
2737772
2737697
-
Lys
TTT
-
¡û
>W131160228
AQWK01000008
Alphaproteobacteria
Novosphingobium nitrogenifigens DSM 19370 [AQWK]
17001
16926
-
Lys
TTT
[ENA]
¡û
>W131222148
AUBA01000019
Alphaproteobacteria
Novosphingobium acidiphilum DSM 19966 [AUBA]
59983
60058
+
Lys
TTT
[ENA]
¡û
>W131003026
AGZU01000016
Alphaproteobacteria
Sphingobium yanoikuyae ATCC 51230 [AGZU]
19284
19209
-
Lys
TTT
[ENA]
¡û
>W131052386
AMYX01000042
Alphaproteobacteria
alpha proteobacterium LLX12A [AMYX]
4443
4518
+
Lys
TTT
[ENA]
¡û
>W131241123
BARE01000013
Alphaproteobacteria
Sphingobium xenophagum NBRC 107872 [BARE]
15528
15603
+
Lys
TTT
[ENA]
¡û
>W131251322
CAVK010000206
Alphaproteobacteria
Sphingobium indicum BiD32 [CAVK]
393
318
-
Lys
TTT
[ENA]
¡û
>w016535
AAQG01000011
Alphaproteobacteria
Sphingomonas sp. SKA58 [AAQG]
88393
88321
-
Lys
TTT
[ENA]
¡û
>W141076325
ATDP01000078
Alphaproteobacteria
Sphingobium lactosutens DS20 [ATDP]
38040
37965
-
Lys
TTT
[ENA]
¡û
>WENV181184408
OEKC01000071
[OEKC] metagenome; 1998
8961
8886
-
Lys
TTT
[ENA]
¢þ
>WENV181227893
OFDN01071830
[OFDN] hot springs metagenome; Water
142
67
-
Lys
TTT
[ENA]
¢þ
>W141191352
AYOY01000153
Alphaproteobacteria
Sphingobium sp. C100 [AYOY]
287
362
+
Lys
TTT
[ENA]
¡û
>WENV183660872
ORJL010062492
[ORJL] groundwater metagenome; groundwater
1759
1684
-
Lys
TTT
[ENA]
¢þ
>WENV183729958
PJTR01000242
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
565
490
-
Lys
TTT
[ENA]
¢þ
>WENV183730612
PJTS01000193
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
565
490
-
Lys
TTT
[ENA]
¢þ
>WENV183732740
PJTX01009878
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
858
933
+
Lys
TTT
[ENA]
¢þ
>WENV183733153
PJTY01000132
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
26865
26940
+
Lys
TTT
[ENA]
¢þ
>WENV183734292
PJTZ01001123
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
3058
2983
-
Lys
TTT
[ENA]
¢þ
>WENV183737011
PJUD01000214
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
26881
26956
+
Lys
TTT
[ENA]
¢þ
>WENV170228763
CEQG01038706
[CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
3396
3321
-
Lys
TTT
[ENA]
¢þ
>WENV170236401
CEQL01280851
[CEQL] marine metagenome genome assembly TARA_076_SRF_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
376
301
-
Lys
TTT
[ENA]
¢þ
>WENV170264473
CERD01035922
[CERD] marine metagenome genome assembly TARA_070_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
143
218
+
Lys
TTT
[ENA]
¢þ
>W141426713
JEMV01000002
Alphaproteobacteria
Sphingobium sp. Ant17 [JEMV]
52784
52859
+
Lys
TTT
[ENA]
¡û
>WENV170831399
MDSZ01043557
[MDSZ] marine metagenome; seawater
3458
3383
-
Lys
TTT
[ENA]
¢þ
>C181047614
CP020925
Alphaproteobacteria
Sphingobium yanoikuyae SHJ [CP020925]
2445063
2444988
-
Lys
TTT
-
¡û
>C181072106
CP022745
Alphaproteobacteria
Sphingobium xenophagum C1 [CP022745, CP022746]
2994068
2994143
+
Lys
TTT
-
¡û
>C181089720
CP023741
Alphaproteobacteria
Sphingobium yanoikuyae S72 [CP023741]
906576
906501
-
Lys
TTT
-
¡û
>C191002771
AP018518
Alphaproteobacteria
Sphingobium sp. YG1 [AP018518, AP018519]
645525
645450
-
Lys
TTT
-
¡û
>W141520433
JGVR01000002
Alphaproteobacteria
Sphingobium yanoikuyae [JGVR]
138957
138882
-
Lys
TTT
[ENA]
¡û
>C191063629
CP029335
Alphaproteobacteria
Sphingobium sp. LF-16 [CP029335]
2131804
2131879
+
Lys
TTT
-
¡û
>C191103875
CP033230
Alphaproteobacteria
Sphingobium yanoikuyae SJTF8 [CP033230]
2105621
2105696
+
Lys
TTT
-
¡û
>C191163693
CP039248
Alphaproteobacteria
Sphingobium sp. PAMC28499 [CP039248]
3788105
3788180
+
Lys
TTT
-
¡û
>W141807752
JPOU01000016
Alphaproteobacteria
Sphingobium yanoikuyae [JPOU]
17761
17686
-
Lys
TTT
[ENA]
¡û
>W141808037
JPPQ01000069
Alphaproteobacteria
Sphingobium sp. ba1 [JPPQ]
1790688
1790763
+
Lys
TTT
[ENA]
¡û
>W1910006998
BBQY01000004
Alphaproteobacteria
Sphingobium xenophagum OW59 [BBQY]
609278
609203
-
Lys
TTT
[ENA]
¡û
>W1910199121
FBVT01000010
Alphaproteobacteria
Sphingobium sp. Z007 [FBVT]
119953
119878
-
Lys
TTT
[ENA]
¡û
>W1910199196
FBVU01000039
Alphaproteobacteria
Sphingobium sp. Z007 [FBVU]
119923
119848
-
Lys
TTT
[ENA]
¡û
>W1910199234
FBVV01000018
Alphaproteobacteria
Sphingobium sp. Z007 [FBVV]
321288
321363
+
Lys
TTT
[ENA]
¡û
>W1910199278
FBVW01000002
Alphaproteobacteria
Sphingobium sp. Z007 [FBVW]
119848
119773
-
Lys
TTT
[ENA]
¡û
>W1910199338
FBVX01000031
Alphaproteobacteria
Sphingobium sp. Z007 [FBVX]
84865
84790
-
Lys
TTT
[ENA]
¡û
>W1910199962
FBXK01000005
Alphaproteobacteria
Sphingobium sp. Z007 [FBXK]
1486675
1486750
+
Lys
TTT
[ENA]
¡û
>W1910744317
MIAK01000064
Alphaproteobacteria
Sphingomonadales bacterium RIFCSPLOWO2_12_FULL_63_15 [MIAK]
35447
35522
+
Lys
TTT
[ENA]
¡û
>W1911075014
NMUA01000018
Alphaproteobacteria
Sphingobium sp. D43FB [NMUA]
59010
59085
+
Lys
TTT
[ENA]
¡û
>W1911114806
NOIW01000004
Alphaproteobacteria
Sphingobium sp. IP1 [NOIW]
58367
58292
-
Lys
TTT
[ENA]
¡û
>W1911688297
QLJK01000010
Alphaproteobacteria
Sphingomonas sp. S-NIH.Pt3_0716 [QLJK]
2647
2572
-
Lys
TTT
[ENA]
¡û
>W1911722438
QRAL01000013
Alphaproteobacteria
Sphingobium yanoikuyae SK-NIH.Env6_1116 [QRAL]
42688
42763
+
Lys
TTT
[ENA]
¡û
>W1911746075
QVRA01000003
Alphaproteobacteria
Sphingobium terrigena EO9 [QVRA]
107299
107374
+
Lys
TTT
[ENA]
¡û
>W1810400879
PYGL01000009
Alphaproteobacteria
Sphingobium sp. AEW4 [PYGL]
78502
78427
-
Lys
TTT
[ENA]
¡û
>W1510756946
JACT01000001
Alphaproteobacteria
Sphingobium cupriresistens LL01 [JACT]
1975092
1975167
+
Lys
TTT
[ENA]
¡û
>W1510941326
JFFT01000006
Alphaproteobacteria
Sphingobium yanoikuyae SHJ [JFFT]
19957
20032
+
Lys
TTT
[ENA]
¡û
>W1511592121
LBIC01000012
Alphaproteobacteria
Sphingobium chungbukense DJ77 [LBIC]
144018
143943
-
Lys
TTT
[ENA]
¡û
>W11151086
AEWJ01000054
Alphaproteobacteria
Novosphingobium nitrogenifigens DSM 19370 [AEWJ]
16731
16656
-
Lys
TTT
[ENA]
¡û
>W11176417
AFXE01000006
Alphaproteobacteria
Sphingobium yanoikuyae XLDN2-5 [AFXE]
17742
17667
-
Lys
TTT
[ENA]
¡û
>W1610076474
BCYT01000012
Alphaproteobacteria
Sphingobium abikonense NBRC 16140 [BCYT]
24491
24416
-
Lys
TTT
[ENA]
¡û
>W121068949
AJVL01000027
Alphaproteobacteria
Sphingobium sp. AP49 [AJVL]
13468
13393
-
Lys
TTT
[ENA]
¡û
>W121084350
AKIB01000116
Alphaproteobacteria
Sphingobium xenophagum QYY [AKIB]
119627
119702
+
Lys
TTT
[ENA]
¡û
>W1610590983
LDRW01000016
Alphaproteobacteria
Novosphingobium barchaimii [LDRW]
244745
244670
-
Lys
TTT
[ENA]
¡û
>W1610719178
LLZQ01000006
Alphaproteobacteria
Novosphingobium sp. FSW06-99 [LLZQ]
151099
151024
-
Lys
TTT
[ENA]
¡û
>W1610719247
LLZR01000021
Alphaproteobacteria
Novosphingobium sp. Fuku2-ISO-50 [LLZR]
164
89
-
Lys
TTT
[ENA]
¡û
>W1610733158
LMKV01000001
Alphaproteobacteria
Sphingobium sp. Leaf26 [LMKV]
150465
150540
+
Lys
TTT
[ENA]
¡û
>W1610920964
LSTR01000022
Alphaproteobacteria
Sphingobium yanoikuyae [LSTR]
190220
190145
-
Lys
TTT
[ENA]
¡û
>W1610922600
LSVG01000009
Alphaproteobacteria
Sphingobium yanoikuyae [LSVG]
54394
54319
-
Lys
TTT
[ENA]
¡û
>WENV077842
AAFX01113746
Soil microbial communities from Minnesota Farm
616
693
+
Lys
TTT
[ENA]
>W1710074163
BCYT01000012
Alphaproteobacteria
Sphingobium abikonense NBRC 16140 [BCYT]
24491
24416
-
Lys
TTT
[ENA]
¡û
>W1710542233
FNYZ01000009
Alphaproteobacteria
Sphingobium sp. AP50 [FNYZ]
13294
13369
+
Lys
TTT
[ENA]
¡û
>W1710542241
FNYZ01000011
Alphaproteobacteria
Sphingobium sp. AP50 [FNYZ]
12465
12540
+
Lys
TTT
[ENA]
¡û
>W1710551575
FOGE01000005
Alphaproteobacteria
Sphingobium sp. YR768 [FOGE]
89743
89668
-
Lys
TTT
[ENA]
¡û
>W1710592142
FRCG01000001
Alphaproteobacteria
Sphingobium sp. YR657 [FRCG]
624622
624697
+
Lys
TTT
[ENA]
¡û
>W1710710263
LDRW01000016
Alphaproteobacteria
Novosphingobium barchaimii [LDRW]
244745
244670
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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