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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.239083 (53 seq.)
>W1710796451
LJSC01000026
Alphaproteobacteria
Gemmobacter sp. LW-1 [LJSC]
37181
37106
-
Ala
TGC
[ENA]
¡û
>W1710796466
LJSC01000040
Alphaproteobacteria
Gemmobacter sp. LW-1 [LJSC]
37187
37112
-
Ala
TGC
[ENA]
¡û
>W1710796471
LJSC01000041
Alphaproteobacteria
Gemmobacter sp. LW-1 [LJSC]
103465
103540
+
Ala
TGC
[ENA]
¡û
>W1710796478
LJSC01000048
Alphaproteobacteria
Gemmobacter sp. LW-1 [LJSC]
103819
103744
-
Ala
TGC
[ENA]
¡û
>W1710796494
LJSC01000054
Alphaproteobacteria
Gemmobacter sp. LW-1 [LJSC]
3726
3651
-
Ala
TGC
[ENA]
¡û
>W1710796497
LJSC01000055
Alphaproteobacteria
Gemmobacter sp. LW-1 [LJSC]
3726
3651
-
Ala
TGC
[ENA]
¡û
>W1710852518
LLVU01000012
Alphaproteobacteria
Rhodobacter capsulatus [LLVU]
3720
3645
-
Ala
TGC
[ENA]
¡û
>W1711135083
LUYN01000046
Alphaproteobacteria
Rhodobacterales bacterium Alpha_01 [LUYN]
2246
2171
-
Ala
TGC
[ENA]
¡û
>W1711947359
NBOA01000025
Alphaproteobacteria
Thioclava sp. F34-6 [NBOA]
1874
1949
+
Ala
TGC
[ENA]
¡û
>C171067764
CP017781
Alphaproteobacteria
Rhodobacter sp. LPB0142 [CP017781]
1396887
1396962
+
Ala
TGC
-
¡û
>C171067780
CP017781
Alphaproteobacteria
Rhodobacter sp. LPB0142 [CP017781]
3426864
3426789
-
Ala
TGC
-
¡û
>C171067789
CP017781
Alphaproteobacteria
Rhodobacter sp. LPB0142 [CP017781]
2616638
2616563
-
Ala
TGC
-
¡û
>WENV180210042
OBAL01075307
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
23
98
+
Ala
TGC
[ENA]
¢þ
>WENV180285282
OBID01313670
[OBID] metagenome; sludge
17
92
+
Ala
TGC
[ENA]
¢þ
>WENV180593855
OCOY01000705
[OCOY] marine metagenome; ENVO:00002010
2917
2992
+
Ala
TGC
[ENA]
¢þ
>WENV180594072
OCOY01026900
[OCOY] marine metagenome; ENVO:00002010
568
493
-
Ala
TGC
[ENA]
¢þ
>WENV180594076
OCOY01027532
[OCOY] marine metagenome; ENVO:00002010
2
77
+
Ala
TGC
[ENA]
¢þ
>WENV181167628
OEIU01051405
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
676
601
-
Ala
TGC
[ENA]
¢þ
>WENV181234147
OFET01012127
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
76
151
+
Ala
TGC
[ENA]
¢þ
>WENV181234760
OFEU01004515
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
200
275
+
Ala
TGC
[ENA]
¢þ
>WENV181234792
OFEU01010067
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
481
406
-
Ala
TGC
[ENA]
¢þ
>WENV181844158
OGVV01015177
[OGVV] freshwater metagenome; freshwater
226
301
+
Ala
TGC
[ENA]
¢þ
>WENV170010470
APMI01017950
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
2024
2099
+
Ala
TGC
[ENA]
¢þ
>WENV170011949
APMI01105951
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
888
813
-
Ala
TGC
[ENA]
¢þ
>WENV170655500
JTFN01039139
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
508
583
+
Ala
TGC
[ENA]
¢þ
>WENV170675200
LCWZ01015571
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
142
67
-
Ala
TGC
[ENA]
¢þ
>WENV170681030
LFEF01044822
[LFEF] freshwater metagenome; waterbloom
201
276
+
Ala
TGC
[ENA]
¢þ
>WENV170715125
LNFM01136820
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
214
289
+
Ala
TGC
[ENA]
¢þ
>C181049342
CP021114
Alphaproteobacteria
Aestuarium zhoushanense G7 [CP021114]
533599
533674
+
Ala
TGC
-
¡û
>C181049365
CP021114
Alphaproteobacteria
Aestuarium zhoushanense G7 [CP021114]
2470280
2470205
-
Ala
TGC
-
¡û
>C181049378
CP021114
Alphaproteobacteria
Aestuarium zhoushanense G7 [CP021114]
1553999
1553924
-
Ala
TGC
-
¡û
>W141531737
JHEH01000075
Alphaproteobacteria
Thioclava dalianensis [JHEH]
2176
2251
+
Ala
TGC
[ENA]
¡û
>W1911581879
PGOI01000017
Alphaproteobacteria
Pseudorhodobacter sp. MZDSW-24AT [PGOI]
3710
3635
-
Ala
TGC
[ENA]
¡û
>W1810174042
PJON01000009
Alphaproteobacteria
Tabrizicola aquatica RCRI19 [PJON]
2016
2091
+
Ala
TGC
[ENA]
¡û
>W1810356738
PVND01000002
Alphaproteobacteria
Meinhardsimonia xiamenensis DSM 24422 [PVND]
4482
4407
-
Ala
TGC
[ENA]
¡û
>W1810504115
QBKP01000051
Alphaproteobacteria
Gemmobacter caeni DSM 21823 [QBKP]
2049
2124
+
Ala
TGC
[ENA]
¡û
>W1810584551
QFBB01000024
Alphaproteobacteria
Thioclava sp. NG1 [QFBB]
1737
1812
+
Ala
TGC
[ENA]
¡û
>W1810633771
QITQ01000005
Alphaproteobacteria
Roseovarius amoyensis GCL-8 [QITQ]
191143
191218
+
Ala
TGC
[ENA]
¡û
>W1810692282
QLIW01000002
Alphaproteobacteria
Rhodobacteraceae bacterium AsT-22 [QLIW]
207585
207510
-
Ala
TGC
[ENA]
¡û
>W1810721919
QNTQ01000038
Alphaproteobacteria
Rhodosalinus halophilus E84 [QNTQ]
3061
2986
-
Ala
TGC
[ENA]
¡û
>W1810733749
QOHR01000007
Alphaproteobacteria
Rhodosalinus sediminis WDN1C137 [QOHR]
111457
111382
-
Ala
TGC
[ENA]
¡û
>C151006166
CP004372
Alphaproteobacteria
Roseibacterium elongatum DSM 19469 DFL-43 [CP004372]
722546
722471
-
Ala
TGC
[Ensembl]
¡û
>C151006171
CP004372
Alphaproteobacteria
Roseibacterium elongatum DSM 19469 DFL-43 [CP004372]
5279
5204
-
Ala
TGC
[Ensembl]
¡û
>W1610715657
LLVU01000012
Alphaproteobacteria
Rhodobacter capsulatus [LLVU]
3720
3645
-
Ala
TGC
[ENA]
¡û
>W1610946203
LUYN01000046
Alphaproteobacteria
Rhodobacterales bacterium Alpha_01 [LUYN]
2246
2171
-
Ala
TGC
[ENA]
¡û
>W1710520684
FNFV01000001
Alphaproteobacteria
Meinhardsimonia xiamenensis xiamenense [FNFV]
4509
4434
-
Ala
TGC
[ENA]
¡û
>W1710530074
FNOM01000003
Alphaproteobacteria
Roseicitreum antarcticum [FNOM]
416770
416845
+
Ala
TGC
[ENA]
¡û
>W1710530101
FNOM01000034
Alphaproteobacteria
Roseicitreum antarcticum [FNOM]
2100
2175
+
Ala
TGC
[ENA]
¡û
>W1710530104
FNOM01000039
Alphaproteobacteria
Roseicitreum antarcticum [FNOM]
6171
6246
+
Ala
TGC
[ENA]
¡û
>W1710530106
FNOM01000042
Alphaproteobacteria
Roseicitreum antarcticum [FNOM]
7077
7002
-
Ala
TGC
[ENA]
¡û
>W1710548358
FODS01000007
Alphaproteobacteria
Salinihabitans flavidus [FODS]
3616
3541
-
Ala
TGC
[ENA]
¡û
>W1710548363
FODS01000010
Alphaproteobacteria
Salinihabitans flavidus [FODS]
3616
3541
-
Ala
TGC
[ENA]
¡û
>W1710548379
FODS01000020
Alphaproteobacteria
Salinihabitans flavidus [FODS]
63089
63014
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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