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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.239103 (59 seq.)
>W1710885900
LMXN01000004
Bacteroidota
Algoriphagus resistens NH1 [LMXN]
1014
1089
+
Lys
TTT
[ENA]
¡û
>W1710885903
LMXN01000004
Bacteroidota
Algoriphagus resistens NH1 [LMXN]
1399
1474
+
Lys
TTT
[ENA]
¡û
>W1711704552
MSPQ01000002
Bacteroidota
Algoriphagus marinus am2 [MSPQ]
486598
486673
+
Lys
TTT
[ENA]
¡û
>W1711704555
MSPQ01000002
Bacteroidota
Algoriphagus marinus am2 [MSPQ]
487119
487194
+
Lys
TTT
[ENA]
¡û
>W1711707883
MSSV01000007
Bacteroidota
Algoriphagus ratkowskyi [MSSV]
120812
120737
-
Lys
TTT
[ENA]
¡û
>W1711707886
MSSV01000007
Bacteroidota
Algoriphagus ratkowskyi [MSSV]
120359
120286
-
Lys
TTT
[ENA]
¡û
>W1711707918
MSSW01000024
Bacteroidota
Algoriphagus antarcticus [MSSW]
45
120
+
Lys
TTT
[ENA]
¡û
>W1711707921
MSSW01000025
Bacteroidota
Algoriphagus antarcticus [MSSW]
21
96
+
Lys
TTT
[ENA]
¡û
>w023317
AAXU01000003
Bacteroidota
Algoriphagus machipongonensis PR1 [AAXU]
315665
315740
+
Lys
TTT
[ENA]
¡û
>w023314
AAXU01000003
Bacteroidota
Algoriphagus machipongonensis PR1 [AAXU]
315130
315207
+
Lys
TTT
[ENA]
¡û
>WENV181322099
OFKP01005192
[OFKP] marine metagenome; sea ice
398
325
-
Lys
TTT
[ENA]
¢þ
>WENV181323836
OFKZ01011287
[OFKZ] marine metagenome; sea ice
328
401
+
Lys
TTT
[ENA]
¢þ
>WENV181376960
OFRA01000830
[OFRA] wastewater metagenome; Lake Maggiore Verbania
4036
3963
-
Lys
TTT
[ENA]
¢þ
>WENV183732321
PJTX01000011
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
3649
3576
-
Lys
TTT
[ENA]
¢þ
>WENV183732388
PJTX01000084
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
34393
34320
-
Lys
TTT
[ENA]
¢þ
>WENV183732392
PJTX01000094
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
35178
35105
-
Lys
TTT
[ENA]
¢þ
>WENV183735384
PJUA01020552
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
366
293
-
Lys
TTT
[ENA]
¢þ
>WENV170574428
FLYM01037080
[FLYM] hot springs metagenome; Sediment
616
543
-
Lys
TTT
[ENA]
¢þ
>WENV170574431
FLYM01037080
[FLYM] hot springs metagenome; Sediment
182
107
-
Lys
TTT
[ENA]
¢þ
>WENV170990883
MWWA01064847
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
227
154
-
Lys
TTT
[ENA]
¢þ
>C181179085
CP029480
Bacteroidota
Arcticibacterium luteifluviistationis SM1504 [CP029480]
313573
313500
-
Lys
TTT
-
¡û
>C181187343
CP030041
Bacteroidota
Echinicola strongylocentroti MEBiC08714 [CP030041]
3910737
3910810
+
Lys
TTT
-
¡û
>C181187346
CP030041
Bacteroidota
Echinicola strongylocentroti MEBiC08714 [CP030041]
3911488
3911561
+
Lys
TTT
-
¡û
>C191175186
CP040106
Bacteroidota
Echinicola rosea JL3085 [CP040106]
2076641
2076714
+
Lys
TTT
-
¡û
>C191175189
CP040106
Bacteroidota
Echinicola rosea JL3085 [CP040106]
2077013
2077086
+
Lys
TTT
-
¡û
>C191189161
CP041253
Bacteroidota
Echinicola soli LN3S3 [CP041253]
2220045
2220118
+
Lys
TTT
-
¡û
>C191189164
CP041253
Bacteroidota
Echinicola soli LN3S3 [CP041253]
2220513
2220586
+
Lys
TTT
-
¡û
>C191222273
LR590484
Bacteroidota
Sphingobacterium thalpophilum NCTC11429 [LR590484]
649626
649699
+
Lys
TTT
-
¡û
>C191222316
LR590484
Bacteroidota
Sphingobacterium thalpophilum NCTC11429 [LR590484]
5681665
5681738
+
Lys
TTT
-
¡û
>C191222324
LR590484
Bacteroidota
Sphingobacterium thalpophilum NCTC11429 [LR590484]
4660328
4660255
-
Lys
TTT
-
¡û
>W1910548311
FZOK01000012
Bacteroidota
Belliella buryatensis 5C [FZOK]
144523
144450
-
Lys
TTT
[ENA]
¡û
>W1910548314
FZOK01000012
Bacteroidota
Belliella buryatensis 5C [FZOK]
144089
144016
-
Lys
TTT
[ENA]
¡û
>W1910584206
JXSZ01000005
Bacteroidota
Jiulongibacter sediminis JN14-9 [JXSZ]
698187
698114
-
Lys
TTT
[ENA]
¡û
>W1810531974
QCXY01000002
Bacteroidota
Pleomorphovibrio marinus SW125 [QCXY]
559295
559222
-
Lys
TTT
[ENA]
¡û
>W1810686058
QKZU01000004
Bacteroidota
Algoriphagus ratkowskyi DSM 22686 [QKZU]
121145
121072
-
Lys
TTT
[ENA]
¡û
>W1810686061
QKZU01000004
Bacteroidota
Algoriphagus ratkowskyi DSM 22686 [QKZU]
120692
120619
-
Lys
TTT
[ENA]
¡û
>W1810693485
QLLK01000016
Bacteroidota
Algoriphagus yeomjeoni DSM 23446 [QLLK]
70
143
+
Lys
TTT
[ENA]
¡û
>W1810693488
QLLK01000016
Bacteroidota
Algoriphagus yeomjeoni DSM 23446 [QLLK]
562
635
+
Lys
TTT
[ENA]
¡û
>W1810789241
QRGB01000001
Bacteroidota
Pedobacter indicus SM1810 [QRGB]
3290054
3289981
-
Lys
TTT
[ENA]
¡û
>W1810885308
QUNF01000015
Bacteroidota
Algoriphagus antarcticus DSM 15986 [QUNF]
115506
115580
+
Lys
TTT
[ENA]
¡û
>W1810885311
QUNF01000015
Bacteroidota
Algoriphagus antarcticus DSM 15986 [QUNF]
116092
116165
+
Lys
TTT
[ENA]
¡û
>W1810885312
QUNF01000015
Bacteroidota
Algoriphagus antarcticus DSM 15986 [QUNF]
116287
116360
+
Lys
TTT
[ENA]
¡û
>C121010200
CP003281
Bacteroidota
Belliella baltica DSM 15883 [CP003281]
4160632
4160559
-
Lys
TTT
[Ensembl]
¡û
>C121010203
CP003281
Bacteroidota
Belliella baltica DSM 15883 [CP003281]
4160121
4160046
-
Lys
TTT
[Ensembl]
¡û
>C131003293
CP003346
Bacteroidota
Echinicola vietnamensis DSM 17526 [CP003346]
2167375
2167448
+
Lys
TTT
[Ensembl]
¡û
>C131003296
CP003346
Bacteroidota
Echinicola vietnamensis DSM 17526 [CP003346]
2167777
2167850
+
Lys
TTT
[Ensembl]
¡û
>W1610617453
LGTQ01000005
Bacteroidota
Jiulongibacter sediminis JN14-9 [LGTQ]
698187
698112
-
Lys
TTT
[ENA]
¡û
>W1610747826
LMXN01000004
Bacteroidota
Algoriphagus resistens NH1 [LMXN]
1014
1089
+
Lys
TTT
[ENA]
¡û
>W1610747829
LMXN01000004
Bacteroidota
Algoriphagus resistens NH1 [LMXN]
1399
1474
+
Lys
TTT
[ENA]
¡û
>W1710520385
FNFO01000005
Bacteroidota
Catalinimonas alkaloidigena [FNFO]
4607
4532
-
Lys
TTT
[ENA]
¡û
>W1710556715
FOKK01000022
Bacteroidota
Algoriphagus aquimarinus [FOKK]
60358
60431
+
Lys
TTT
[ENA]
¡û
>W1710556718
FOKK01000022
Bacteroidota
Algoriphagus aquimarinus [FOKK]
60817
60892
+
Lys
TTT
[ENA]
¡û
>W1710577993
FPBF01000009
Bacteroidota
Algoriphagus locisalis [FPBF]
70
145
+
Lys
TTT
[ENA]
¡û
>W1710577996
FPBF01000009
Bacteroidota
Algoriphagus locisalis [FPBF]
541
616
+
Lys
TTT
[ENA]
¡û
>W1710594216
FSRC01000001
Bacteroidota
Algoriphagus halophilus [FSRC]
40608
40535
-
Lys
TTT
[ENA]
¡û
>W1710594219
FSRC01000001
Bacteroidota
Algoriphagus halophilus [FSRC]
40204
40131
-
Lys
TTT
[ENA]
¡û
>W1710599294
FTOP01000010
Bacteroidota
Belliella pelovolcani [FTOP]
78362
78289
-
Lys
TTT
[ENA]
¡û
>W1710599297
FTOP01000010
Bacteroidota
Belliella pelovolcani [FTOP]
77928
77853
-
Lys
TTT
[ENA]
¡û
>W1710743040
LGTQ01000005
Bacteroidota
Jiulongibacter sediminis JN14-9 [LGTQ]
698187
698112
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK