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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.239134 (67 seq.)
>W1710861922
LMDZ01000007
Alphaproteobacteria
Phenylobacterium sp. Root1277 [LMDZ]
129630
129555
-
Met
CAT
[ENA]
¡û
>W1710862193
LMEE01000002
Alphaproteobacteria
Phenylobacterium sp. Root1290 [LMEE]
133234
133159
-
Met
CAT
[ENA]
¡û
>W1710864214
LMFS01000001
Alphaproteobacteria
Pseudolabrys sp. Root1462 [LMFS]
309750
309825
+
Met
CAT
[ENA]
¡û
>W1710866774
LMHT01000011
Alphaproteobacteria
Phenylobacterium sp. Root700 [LMHT]
93663
93738
+
Met
CAT
[ENA]
¡û
>W1710867707
LMIM01000005
Alphaproteobacteria
Phenylobacterium sp. Root77 [LMIM]
132765
132690
-
Met
CAT
[ENA]
¡û
>W1710872879
LMMI01000017
Alphaproteobacteria
Methylobacterium sp. Leaf87 [LMMI]
46129
46204
+
Met
CAT
[ENA]
¡û
>W1710873379
LMMS01000030
Alphaproteobacteria
Methylobacterium sp. Leaf93 [LMMS]
67376
67451
+
Met
CAT
[ENA]
¡û
>W1710878520
LMRA01000004
Alphaproteobacteria
Methylobacterium sp. Leaf465 [LMRA]
11625
11550
-
Met
CAT
[ENA]
¡û
>W1711067407
LSEF01000081
Alphaproteobacteria
Bradyrhizobium neotropicale [LSEF]
66632
66707
+
Met
CAT
[ENA]
¡û
>W1711129617
LUUB01000086
Alphaproteobacteria
Bradyrhizobium centrolobii BR 10245 [LUUB]
29792
29867
+
Met
CAT
[ENA]
¡û
>W1711129958
LUUM01000254
Alphaproteobacteria
Methylosinus sp. R-45379 [LUUM]
91353
91278
-
Met
CAT
[ENA]
¡û
>W131166442
ARCM01000001
Alphaproteobacteria
Ancylobacter sp. FA202 [ARCM]
221280
221355
+
Met
CAT
[ENA]
¡û
>W131175710
ARJL01000003
Alphaproteobacteria
Xanthobacteraceae bacterium 501b [ARJL]
580209
580134
-
Met
CAT
[ENA]
¡û
>W1711179400
LWHQ01000010
Alphaproteobacteria
Methylobacterium platani [LWHQ]
1621
1546
-
Met
CAT
[ENA]
¡û
>W1711386078
MEEW01000080
Alphaproteobacteria
Phenylobacterium sp. SCN 69-14 [MEEW]
1015
940
-
Met
CAT
[ENA]
¡û
>W1711501365
MKRN01000110
Alphaproteobacteria
Nitrobacter sp. 62-13 [MKRN]
7705
7780
+
Met
CAT
[ENA]
¡û
>W1711694747
MSIG01000004
Alphaproteobacteria
Mongoliimonas terrestris MIMtkB18 [MSIG]
290640
290565
-
Met
CAT
[ENA]
¡û
>PL171000067
AP014705
Alphaproteobacteria
Methylobacterium aquaticum MA-22A plasmid:pMaq22A_1p
1272731
1272806
+
Met
CAT
[ENA]
¡û
>WENV180016436
FSUX01001563
[FSUX] metagenome; soil
6923
6848
-
Ile2
CAT
[ENA]
¢þ
>WENV180026300
FTIT01001142
[FTIT] metagenome; soil
1591
1666
+
Ile2
CAT
[ENA]
¢þ
>WENV180026402
FTIT01056844
[FTIT] metagenome; soil
528
453
-
Ile2
CAT
[ENA]
¢þ
>WENV180031476
FTJO01159890
[FTJO] metagenome; soil
198
273
+
Ile2
CAT
[ENA]
¢þ
>WENV180034339
FTKP01278629
[FTKP] metagenome; soil
367
442
+
Ile2
CAT
[ENA]
¢þ
>WENV180291663
OBIV01123454
[OBIV] soil metagenome; Clay
455
380
-
Ile2
CAT
[ENA]
¢þ
>WENV180292187
OBIV01342065
[OBIV] soil metagenome; Clay
233
308
+
Ile2
CAT
[ENA]
¢þ
>w001280
AAAF01000003
Alphaproteobacteria
Rhodopseudomonas palustris [AAAF]
40150
40078
-
Met
CAT
[ENA]
¡û
>WENV181167228
OEIU01014813
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
2684
2759
+
Ile2
CAT
[ENA]
¢þ
>WENV181312136
OFJB01047254
[OFJB] sludge metagenome; sludge
757
832
+
Ile2
CAT
[ENA]
¢þ
>WENV181402537
OFTY01003609
[OFTY] sludge metagenome; sludge
2729
2804
+
Ile2
CAT
[ENA]
¢þ
>W141216051
AZUO01000001
Alphaproteobacteria
Methylosinus sp. LW3 [AZUO]
1664161
1664086
-
Met
CAT
[ENA]
¡û
>W141223342
BADE01000037
Alphaproteobacteria
Methylobacterium sp. B34 [BADE]
9330
9405
+
Met
CAT
[ENA]
¡û
>WENV170556501
CXWL01009583
[CXWL] groundwater metagenome; biofilm material
22135
22210
+
Met
CAT
[ENA]
¢þ
>WENV170556664
CXWL01011822
[CXWL] groundwater metagenome; biofilm material
4185
4110
-
Met
CAT
[ENA]
¢þ
>WENV170706465
LNAP01003258
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
5703
5628
-
Met
CAT
[ENA]
¢þ
>WENV170707724
LNAP01031347
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
2608
2533
-
Met
CAT
[ENA]
¢þ
>WENV170708130
LNAP01051545
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
115
190
+
Met
CAT
[ENA]
¢þ
>WENV170710348
LNFM01001574
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
38660
38585
-
Met
CAT
[ENA]
¢þ
>WENV170712196
LNFM01010705
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
3128
3053
-
Met
CAT
[ENA]
¢þ
>WENV170712260
LNFM01011500
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
11986
11911
-
Met
CAT
[ENA]
¢þ
>WENV170713973
LNFM01048912
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
2932
2857
-
Met
CAT
[ENA]
¢þ
>C181180141
CP029552
Alphaproteobacteria
Methylobacterium sp. 17Sr1-1 [CP029552]
2860740
2860665
-
Met
CAT
-
¡û
>C181227835
LT962688
Alphaproteobacteria
Methylorubrum extorquens TK 0001 [LT962688]
1834448
1834523
+
Met
CAT
-
¡û
>C191171961
CP039740
Alphaproteobacteria
Pseudolabrys sp. FHR47 [CP039740]
3908050
3907975
-
Met
CAT
-
¡û
>W141701374
JMKQ01000004
Alphaproteobacteria
Methylocystis sp. LW5 [JMKQ]
692300
692225
-
Met
CAT
[ENA]
¡û
>C09107525
FP103042
Alphaproteobacteria
Methylorubrum extorquens DM4 [FP103042]
4455306
4455231
-
Met
CAT
[Ensembl]
¡û
>C09107626
CP001510
Alphaproteobacteria
Methylorubrum extorquens AM1 [CP001510]
3955975
3955900
-
Met
CAT
[Ensembl]
¡û
>W1810150194
PIUM01000064
Alphaproteobacteria
Telmatospirillum siberiense 26-4b1 [PIUM]
6395
6320
-
Met
CAT
[ENA]
¡û
>W1511507905
JXOD01000199
Alphaproteobacteria
Methylobacterium platani JCM 14648 [JXOD]
4073
4148
+
Met
CAT
[ENA]
¡û
>W1610047405
BBDG01000481
Alphaproteobacteria
Methylobacterium platani JCM 14648 [BBDG]
1186
1111
-
Met
CAT
[ENA]
¡û
>W1610724268
LMDZ01000007
Alphaproteobacteria
Phenylobacterium sp. Root1277 [LMDZ]
129630
129555
-
Met
CAT
[ENA]
¡û
>W1610724539
LMEE01000002
Alphaproteobacteria
Phenylobacterium sp. Root1290 [LMEE]
133234
133159
-
Met
CAT
[ENA]
¡û
>W1610726560
LMFS01000001
Alphaproteobacteria
Pseudolabrys sp. Root1462 [LMFS]
309750
309825
+
Met
CAT
[ENA]
¡û
>W1610729120
LMHT01000011
Alphaproteobacteria
Phenylobacterium sp. Root700 [LMHT]
93663
93738
+
Met
CAT
[ENA]
¡û
>W1610730053
LMIM01000005
Alphaproteobacteria
Phenylobacterium sp. Root77 [LMIM]
132765
132690
-
Met
CAT
[ENA]
¡û
>W1610907977
LSEF01000081
Alphaproteobacteria
Bradyrhizobium neotropicale [LSEF]
66632
66707
+
Met
CAT
[ENA]
¡û
>W1610940690
LUUB01000086
Alphaproteobacteria
Bradyrhizobium centrolobii BR 10245 [LUUB]
29792
29867
+
Met
CAT
[ENA]
¡û
>W1610941031
LUUM01000254
Alphaproteobacteria
Methylosinus sp. R-45379 [LUUM]
91353
91278
-
Met
CAT
[ENA]
¡û
>W1610987301
LWHQ01000010
Alphaproteobacteria
Methylobacterium platani [LWHQ]
1621
1546
-
Met
CAT
[ENA]
¡û
>W1710044010
BBDG01000481
Alphaproteobacteria
Methylobacterium platani JCM 14648 [BBDG]
1186
1111
-
Met
CAT
[ENA]
¡û
>W1710505297
FMTP01000001
Alphaproteobacteria
Ancylobacter rudongensis [FMTP]
322599
322524
-
Met
CAT
[ENA]
¡û
>W1710523130
FNHS01000010
Alphaproteobacteria
Methylobacterium phyllostachyos [FNHS]
43978
44053
+
Met
CAT
[ENA]
¡û
>W1710547191
FOCS01000020
Alphaproteobacteria
Methylobacterium sp. UNC300MFChir4.1 [FOCS]
68769
68694
-
Met
CAT
[ENA]
¡û
>W1710548800
FOEB01000003
Alphaproteobacteria
Methylobacterium sp. ap11 [FOEB]
42776
42851
+
Met
CAT
[ENA]
¡û
>W1710559260
FOMM01000026
Alphaproteobacteria
Methylobacterium sp. 13MFTsu3.1M2 [FOMM]
99927
100002
+
Met
CAT
[ENA]
¡û
>W1710560687
FONO01000020
Alphaproteobacteria
Methylobacterium sp. yr596 [FONO]
8186
8111
-
Met
CAT
[ENA]
¡û
>W1710563184
FOPM01000013
Alphaproteobacteria
Methylobacterium gossipiicola [FOPM]
118847
118922
+
Met
CAT
[ENA]
¡û
>W1710579026
FPCB01000004
Alphaproteobacteria
Methylobacterium sp. 174MFSha1.1 [FPCB]
298572
298647
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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