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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.239148 (67 seq.)
>W1710811805
LKIU01000005
Actinomycetota
Arthrobacter sp. Edens01 [LKIU]
987724
987651
-
His
GTG
[ENA]
¡û
>W1710872204
LMLU01000010
Actinomycetota
Arthrobacter sp. Leaf234 [LMLU]
91008
90935
-
His
GTG
[ENA]
¡û
>W1710875473
LMOK01000001
Actinomycetota
Leifsonia sp. Leaf325 [LMOK]
116604
116529
-
His
GTG
[ENA]
¡û
>W1710876206
LMPA01000002
Actinomycetota
Plantibacter sp. Leaf171 [LMPA]
648031
647956
-
His
GTG
[ENA]
¡û
>W1710880745
LMSO01000002
Actinomycetota
Arthrobacter sp. Soil782 [LMSO]
13982
13907
-
His
GTG
[ENA]
¡û
>W1710893842
LNFD01000318
Actinomycetota
Actinomycetales bacterium Ga0077552 [LNFD]
2903
2978
+
His
GTG
[ENA]
¡û
>W131066812
ANPE02000118
Actinomycetota
Arthrobacter crystallopoietes BAB-32 [ANPE]
10911
10836
-
His
GTG
[ENA]
¡û
>W1711173301
LWCT01000012
Actinomycetota
Plantibacter sp. H53 [LWCT]
40202
40277
+
His
GTG
[ENA]
¡û
>W1711664199
MQVS01000003
Actinomycetota
Buchananella hordeovulneris [MQVS]
132526
132453
-
His
GTG
[ENA]
¡û
>W1712049500
NFSC01000031
Actinomycetota
Arthrobacter agilis [NFSC]
189793
189866
+
His
GTG
[ENA]
¡û
>W1712049521
NFSD01000027
Actinomycetota
Arthrobacter agilis [NFSD]
68119
68192
+
His
GTG
[ENA]
¡û
>C171073445
CP018135
Actinomycetota
Neomicrococcus aestuarii B18 [CP018135]
446448
446373
-
His
GTG
-
¡û
>W131161257
AQXM01000034
Actinomycetota
Acaricomes phytoseiuli DSM 14247 [AQXM]
13782
13707
-
His
GTG
[ENA]
¡û
>WENV180018348
FSYX01000177
[FSYX] metagenome; soil
6090
6015
-
His
GTG
[ENA]
¢þ
>W141146532
AWVQ01000908
Actinomycetota
Leifsonia aquatica ATCC 14665 [AWVQ]
5117
5042
-
His
GTG
[ENA]
¡û
>W141203197
AZHY01000291
Actinomycetota
Arthrobacter sp. 35/47 [AZHY]
17098
17023
-
His
GTG
[ENA]
¡û
>W141213555
AZSC01000002
Actinomycetota
Arthrobacter sp. H5 [AZSC]
5720
5645
-
His
GTG
[ENA]
¡û
>WENV170714258
LNFM01064093
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1553
1628
+
His
GTG
[ENA]
¢þ
>C181033508
CP018863
Actinomycetota
Arthrobacter crystallopoietes DSM 20117 [CP018863]
4309782
4309856
+
His
GTG
-
¡û
>C191004143
AP018697
Actinomycetota
Arthrobacter sp. MN05-02 [AP018697]
1983935
1984008
+
His
GTG
-
¡û
>C191100992
CP033107
Actinomycetota
Plantibacter sp. PA-3-X8 [CP033107]
2595132
2595207
+
His
GTG
-
¡û
>C191193422
LR131272
Actinomycetota
Arthrobacter agilis NCTC2676_1 [LR131272]
1774570
1774643
+
His
GTG
-
¡û
>W141809695
JPRS01000054
Actinomycetota
Cryobacterium sp. MLB-32 [JPRS]
33153
33078
-
His
GTG
[ENA]
¡û
>W141809738
JPRS01000744
Actinomycetota
Cryobacterium sp. MLB-32 [JPRS]
373
298
-
His
GTG
[ENA]
¡û
>W1911681951
QKLB01000005
Actinomycetota
Curtobacterium sp. MCPF17_046 [QKLB]
24612
24537
-
His
GTG
[ENA]
¡û
>W1911823627
QZVS01000097
Actinomycetota
Cryobacterium melibiosiphilum Hh39 [QZVS]
91234
91309
+
His
GTG
[ENA]
¡û
>W1911823646
QZVT01000002
Actinomycetota
Arthrobacter cheniae Hz2 [QZVT]
214163
214236
+
His
GTG
[ENA]
¡û
>W1911823692
QZVU01000001
Actinomycetota
Arthrobacter frigidicola MDT2-14 [QZVU]
798378
798305
-
His
GTG
[ENA]
¡û
>W1810167296
PJIJ01000002
Actinomycetota
Arthrobacter sp. ZGTC212 [PJIJ]
1088482
1088557
+
His
GTG
[ENA]
¡û
>W1810167431
PJIM01000001
Actinomycetota
Arthrobacter sp. SX1312 [PJIM]
743607
743680
+
His
GTG
[ENA]
¡û
>W1810167599
PJIP01000007
Actinomycetota
Arthrobacter sp. DWC3 [PJIP]
62560
62487
-
His
GTG
[ENA]
¡û
>W1810167648
PJIQ01000012
Actinomycetota
Arthrobacter sp. B1805 [PJIQ]
61902
61829
-
His
GTG
[ENA]
¡û
>W1810167659
PJIR01000001
Actinomycetota
Arthrobacter sp. B0490 [PJIR]
20132
20205
+
His
GTG
[ENA]
¡û
>W1810167742
PJIS01000002
Actinomycetota
Arthrobacter sp. 9E06 [PJIS]
129991
129916
-
His
GTG
[ENA]
¡û
>W1810167793
PJIT01000002
Actinomycetota
Arthrobacter sp. 9E18 [PJIT]
129991
129916
-
His
GTG
[ENA]
¡û
>W1810167844
PJIU01000002
Actinomycetota
Arthrobacter sp. 9E16 [PJIU]
129991
129916
-
His
GTG
[ENA]
¡û
>W1810167978
PJIX01000002
Actinomycetota
Arthrobacter sp. 08Y14 [PJIX]
1136858
1136933
+
His
GTG
[ENA]
¡û
>W1810168611
PJJJ01000029
Actinomycetota
Cryobacterium sp. Y82 [PJJJ]
154786
154711
-
His
GTG
[ENA]
¡û
>W1810168658
PJJK01000105
Actinomycetota
Cryobacterium sp. Y62 [PJJK]
6991
7066
+
His
GTG
[ENA]
¡û
>W1810168683
PJJL01000043
Actinomycetota
Cryobacterium sp. Y57 [PJJL]
14579
14654
+
His
GTG
[ENA]
¡û
>W1810168756
PJJM01000098
Actinomycetota
Cryobacterium sp. Y50 [PJJM]
126963
126888
-
His
GTG
[ENA]
¡û
>W1810168802
PJJN01000036
Actinomycetota
Cryobacterium sp. Y29 [PJJN]
10203
10278
+
His
GTG
[ENA]
¡û
>W1810168816
PJJO01000048
Actinomycetota
Cryobacterium sp. Y11 [PJJO]
14913
14838
-
His
GTG
[ENA]
¡û
>W1810168907
PJJQ01000028
Actinomycetota
Cryobacterium sp. N21 [PJJQ]
30851
30926
+
His
GTG
[ENA]
¡û
>W1810168952
PJJR01000045
Actinomycetota
Cryobacterium sp. N19 [PJJR]
30814
30889
+
His
GTG
[ENA]
¡û
>W1810169074
PJJT01000090
Actinomycetota
Cryobacterium sp. M91 [PJJT]
36368
36293
-
His
GTG
[ENA]
¡û
>W1810169201
PJJW01000039
Actinomycetota
Cryobacterium sp. M15 [PJJW]
378036
377961
-
His
GTG
[ENA]
¡û
>W1810240398
PPTG01000048
Actinomycetota
Cryobacterium aureum Hh31 [PPTG]
118148
118073
-
His
GTG
[ENA]
¡û
>W1810240409
PPTH01000013
Actinomycetota
Arthrobacter ruber MDB1-42 [PPTH]
20241
20314
+
His
GTG
[ENA]
¡û
>W1810242593
PPXD01000007
Actinomycetota
Cryobacterium zongtaii TMN-42 [PPXD]
412065
412140
+
His
GTG
[ENA]
¡û
>W1810271418
PRKX01000022
Actinomycetota
Arthrobacter agilis CGMCC 1.15723 [PRKX]
68492
68565
+
His
GTG
[ENA]
¡û
>W1510089406
CECE01000006
Actinomycetota
Arthrobacter koreensis 5J12A [CECE]
51900
51827
-
His
GTG
[ENA]
¡û
>W1511317430
JPXF01000042
Actinomycetota
Cryobacterium roopkundense RuG17 [JPXF]
18800
18725
-
His
GTG
[ENA]
¡û
>W1511699858
LGIU01000058
Actinomycetota
Arthrobacter sp. RIT-PI-e [LGIU]
107216
107291
+
His
GTG
[ENA]
¡û
>W121114201
ALPM01000065
Actinomycetota
Arthrobacter sp. TB 23 [ALPM]
18474
18549
+
His
GTG
[ENA]
¡û
>W1610112274
CZJT01000081
Actinomycetota
Paeniglutamicibacter antarcticus [CZJT]
6709
6784
+
His
GTG
[ENA]
¡û
>W1610675902
LKIU01000005
Actinomycetota
Arthrobacter sp. Edens01 [LKIU]
987724
987651
-
His
GTG
[ENA]
¡û
>W1610734550
LMLU01000010
Actinomycetota
Arthrobacter sp. Leaf234 [LMLU]
91008
90935
-
His
GTG
[ENA]
¡û
>W1610738491
LMOZ01000001
Actinomycetota
Leifsonia sp. Leaf336 [LMOZ]
1852257
1852332
+
His
GTG
[ENA]
¡û
>W1610743091
LMSO01000002
Actinomycetota
Arthrobacter sp. Soil782 [LMSO]
13982
13907
-
His
GTG
[ENA]
¡û
>W1710114978
CZJT01000081
Actinomycetota
Paeniglutamicibacter antarcticus [CZJT]
6709
6784
+
His
GTG
[ENA]
¡û
>W1710518066
FNDT01000033
Actinomycetota
Arthrobacter subterraneus [FNDT]
14230
14305
+
His
GTG
[ENA]
¡û
>W1710523543
FNIB01000008
Actinomycetota
Cryobacterium flavum [FNIB]
30875
30950
+
His
GTG
[ENA]
¡û
>W1710526415
FNKH01000002
Actinomycetota
Arthrobacter crystallopoietes [FNKH]
3924102
3924027
-
His
GTG
[ENA]
¡û
>W1710546920
FOCN01000005
Actinomycetota
Cryobacterium luteum [FOCN]
38700
38775
+
His
GTG
[ENA]
¡û
>W1710563697
FOPW01000017
Actinomycetota
Cryobacterium levicorallinum [FOPW]
41694
41769
+
His
GTG
[ENA]
¡û
>W1710608059
FXAP01000001
Actinomycetota
Plantibacter flavus [FXAP]
785238
785313
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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