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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.239151 (88 seq.)
>W1710867135
LMIA01000009
Actinomycetota
Nocardioides sp. Root190 [LMIA]
535656
535731
+
Ala
GGC
[ENA]
¡û
>W1710867851
LMIP01000015
Actinomycetota
Nocardioides sp. Root79 [LMIP]
35186
35111
-
Ala
GGC
[ENA]
¡û
>W1710868039
LMIT01000013
Actinomycetota
Nocardioides sp. Root240 [LMIT]
35186
35111
-
Ala
GGC
[ENA]
¡û
>W1710880717
LMSN01000017
Actinomycetota
Nocardioides sp. Soil777 [LMSN]
108167
108092
-
Ala
GGC
[ENA]
¡û
>W1710881088
LMSU01000005
Actinomycetota
Nocardioides sp. Soil805 [LMSU]
99411
99336
-
Ala
GGC
[ENA]
¡û
>W1711126699
LUPF01000024
Actinomycetota
Nocardioides sp. REDSEA-S22_B2 [LUPF]
9368
9443
+
Ala
GGC
[ENA]
¡û
>W1711126728
LUPG01000086
Actinomycetota
Nocardioides sp. REDSEA-S25_B9 [LUPG]
5818
5743
-
Ala
GGC
[ENA]
¡û
>W1711126771
LUPH01000083
Actinomycetota
Nocardioides sp. REDSEA-S28_B4 [LUPH]
4036
3961
-
Ala
GGC
[ENA]
¡û
>W1711126830
LUPI01000080
Actinomycetota
Nocardioides sp. REDSEA-S30_B4 [LUPI]
81892
81817
-
Ala
GGC
[ENA]
¡û
>W1711126862
LUPJ01000158
Actinomycetota
Nocardioides sp. REDSEA-S31_B4 [LUPJ]
9345
9420
+
Ala
GGC
[ENA]
¡û
>W1711126889
LUPK01000032
Actinomycetota
Nocardioides sp. REDSEA-S33_B3 [LUPK]
101038
100963
-
Ala
GGC
[ENA]
¡û
>W1711126922
LUPL01000009
Actinomycetota
Nocardioides sp. REDSEA-S34_B5 [LUPL]
102476
102401
-
Ala
GGC
[ENA]
¡û
>W1711126967
LUPM01000033
Actinomycetota
Nocardioides sp. REDSEA-S36_B10 [LUPM]
2575
2650
+
Ala
GGC
[ENA]
¡û
>W1711127026
LUPN01000434
Actinomycetota
Nocardioides sp. REDSEA-S37_B12 [LUPN]
848
923
+
Ala
GGC
[ENA]
¡û
>W1711127036
LUPO01000002
Actinomycetota
Nocardioides sp. REDSEA-S39_B2 [LUPO]
101115
101040
-
Ala
GGC
[ENA]
¡û
>W1711127142
LUPQ01000102
Actinomycetota
Nocardioides sp. REDSEA-S43_B3 [LUPQ]
9457
9532
+
Ala
GGC
[ENA]
¡û
>W131250759
CAUY010000103
Actinomycetota
Tropheryma whipplei str. Dig9 [CAUY]
30567
30492
-
Ala
GGC
[ENA]
¡û
>W131190788
ASEP01000048
Actinomycetota
Nocardioides sp. CF8 [ASEP]
56567
56642
+
Ala
GGC
[ENA]
¡û
>W141277542
JAER01000016
Actinomycetota
Nocardioides sp. J54 [JAER]
34074
33999
-
Ala
GGC
[ENA]
¡û
>WENV170228465
CEQG01013249
[CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
215
140
-
Ala
GGC
[ENA]
¢þ
>WENV170728504
LULE01038900
[LULE] marine metagenome; Red Sea water column Station 192 - depth 10m
647
572
-
Ala
GGC
[ENA]
¢þ
>WENV170728623
LULF01000003
[LULF] marine metagenome; Red Sea water column Station 169 - depth 500m
101115
101040
-
Ala
GGC
[ENA]
¢þ
>WENV170730045
LULG01008749
[LULG] marine metagenome; Red Sea water column Station 169 - depth 200m
348
273
-
Ala
GGC
[ENA]
¢þ
>WENV170730745
LULH01003074
[LULH] marine metagenome; Red Sea water column Station 169 - depth 100m
848
923
+
Ala
GGC
[ENA]
¢þ
>WENV170731766
LULI01003203
[LULI] marine metagenome; Red Sea water column Station 169 - depth 50m
2575
2650
+
Ala
GGC
[ENA]
¢þ
>WENV170733376
LULJ01015276
[LULJ] marine metagenome; Red Sea water column Station 169 - depth 25m
764
839
+
Ala
GGC
[ENA]
¢þ
>WENV170733994
LULK01000718
[LULK] marine metagenome; Red Sea water column Station 169 - depth 10m
14338
14263
-
Ala
GGC
[ENA]
¢þ
>WENV170735086
LULL01000002
[LULL] marine metagenome; Red Sea water column Station 149 - depth 500m
101038
100963
-
Ala
GGC
[ENA]
¢þ
>WENV170736690
LULM01017905
[LULM] marine metagenome; Red Sea water column Station 149 - depth 200m
175
250
+
Ala
GGC
[ENA]
¢þ
>WENV170736958
LULN01000244
[LULN] marine metagenome; Red Sea water column Station 149 - depth 100m
9345
9420
+
Ala
GGC
[ENA]
¢þ
>WENV170737428
LULO01000082
[LULO] marine metagenome; Red Sea water column Station 149 - depth 50m
81892
81817
-
Ala
GGC
[ENA]
¢þ
>WENV170739292
LULQ01000132
[LULQ] marine metagenome; Red Sea water column Station 149 - depth 10m
4036
3961
-
Ala
GGC
[ENA]
¢þ
>WENV170740332
LULR01005681
[LULR] marine metagenome; Red Sea water column Station 108 - depth 500m
387
462
+
Ala
GGC
[ENA]
¢þ
>WENV170741648
LULT01000693
[LULT] marine metagenome; Red Sea water column Station 108 - depth 100m
5818
5743
-
Ala
GGC
[ENA]
¢þ
>WENV170743454
LULW01000098
[LULW] marine metagenome; Red Sea water column Station 108 - depth 10m
9368
9443
+
Ala
GGC
[ENA]
¢þ
>WENV170758837
LUMS01000027
[LUMS] marine metagenome; Red Sea water column Station 192 - depth 25m
36494
36569
+
Ala
GGC
[ENA]
¢þ
>WENV170760753
LUMU01000046
[LUMU] marine metagenome; Red Sea water column Station 192 - depth 100m
9457
9532
+
Ala
GGC
[ENA]
¢þ
>WENV170761843
LUMW01000001
[LUMW] marine metagenome; Red Sea water column Station 192 - depth 500m
39194
39119
-
Ala
GGC
[ENA]
¢þ
>C191007101
AP019307
Actinomycetota
Nocardioides baekrokdamisoli KCTC 39748 [AP019307]
459564
459490
-
Ala
GGC
-
¡û
>C191132681
CP034929
Actinomycetota
Nocardioides yefusunii HY056 [CP034929]
1153631
1153705
+
Ala
GGC
-
¡û
>C191132682
CP034929
Actinomycetota
Nocardioides yefusunii HY056 [CP034929]
1153924
1153998
+
Ala
GGC
-
¡û
>C191132683
CP034929
Actinomycetota
Nocardioides yefusunii HY056 [CP034929]
1154217
1154291
+
Ala
GGC
-
¡û
>C191159456
CP038436
Actinomycetota
Nocardioides seonyuensis MMS17-SY207-3 [CP038436]
2999496
2999570
+
Ala
GGC
-
¡û
>C191181590
CP040695
Actinomycetota
Nocardioides sp. S-1144 [CP040695]
1952228
1952302
+
Ala
GGC
-
¡û
>C191182492
CP040748
Actinomycetota
Nocardioides jishulii dk3136 [CP040748]
2365313
2365239
-
Ala
GGC
-
¡û
>C191182493
CP040748
Actinomycetota
Nocardioides jishulii dk3136 [CP040748]
2362706
2362632
-
Ala
GGC
-
¡û
>W141815877
JQJL01000019
Actinomycetota
Nocardioides sp. UNC345MFTsu5.1 [JQJL]
139792
139717
-
Ala
GGC
[ENA]
¡û
>W1910181551
BJMC01000018
Actinomycetota
Pimelobacter simplex NBRC 12069 [BJMC]
103824
103750
-
Ala
GGC
[ENA]
¡û
>W1911798428
QYRP01000002
Actinomycetota
Nocardioides cavernaquae K1W22B-1 [QYRP]
2593885
2593958
+
Ala
GGC
[ENA]
¡û
>W1810157290
PJBV01000012
Actinomycetota
Nocardioides alpinus DSM 23325 [PJBV]
133898
133973
+
Ala
GGC
[ENA]
¡û
>W1810427522
PYXZ01000006
Actinomycetota
Nocardioides currus IB-3 [PYXZ]
215510
215585
+
Ala
GGC
[ENA]
¡û
>W1810462628
PZYX01000006
Actinomycetota
Nocardioides allogilvus KCTC 49020 [PZYX]
4988
4913
-
Ala
GGC
[ENA]
¡û
>W1810462659
PZYY01000002
Actinomycetota
Nocardioides terrigena KCTC 19217 [PZYY]
512328
512403
+
Ala
GGC
[ENA]
¡û
>W1810462711
PZYZ01000002
Actinomycetota
Nocardioides sediminis KCTC 19271 [PZYZ]
782945
783019
+
Ala
GGC
[ENA]
¡û
>W1810487155
QAYJ01000001
Actinomycetota
Nocardioides sp. CF204 [QAYJ]
736440
736513
+
Ala
GGC
[ENA]
¡û
>W1810504014
QBKO01000016
Actinomycetota
Nocardioides sp. CF167 [QBKO]
25943
26017
+
Ala
GGC
[ENA]
¡û
>C151061353
CP009896
Actinomycetota
Pimelobacter simplex VKM Ac-2033D [CP009896]
3608717
3608642
-
Ala
GGC
[Ensembl]
¡û
>W11125305
ADVI01000084
Actinomycetota
Nocardioidaceae bacterium Broad-1 [ADVI]
126894
126969
+
Ala
GGC
[ENA]
¡û
>W1511540051
JZDQ01000053
Actinomycetota
Nocardioides luteus BAFB [JZDQ]
14887
14812
-
Ala
GGC
[ENA]
¡û
>W1610049518
BBFA01000725
Actinomycetota
Nocardioides sp. JCM 18998 [BBFA]
525
600
+
Ala
GGC
[ENA]
¡û
>W1610049527
BBFA01001178
Actinomycetota
Nocardioides sp. JCM 18998 [BBFA]
141
216
+
Ala
GGC
[ENA]
¡û
>W1610049580
BBFC01000504
Actinomycetota
Nocardioides sp. JCM 18999 [BBFC]
450
523
+
Ala
GGC
[ENA]
¡û
>W1610050766
BBGE01001106
Actinomycetota
Nocardioides nitrophenolicus JCM 10703 [BBGE]
129
204
+
Ala
GGC
[ENA]
¡û
>W1610730197
LMIP01000015
Actinomycetota
Nocardioides sp. Root79 [LMIP]
35186
35111
-
Ala
GGC
[ENA]
¡û
>W1610730385
LMIT01000013
Actinomycetota
Nocardioides sp. Root240 [LMIT]
35186
35111
-
Ala
GGC
[ENA]
¡û
>W1610743063
LMSN01000017
Actinomycetota
Nocardioides sp. Soil777 [LMSN]
108167
108092
-
Ala
GGC
[ENA]
¡û
>W1610743434
LMSU01000005
Actinomycetota
Nocardioides sp. Soil805 [LMSU]
99411
99336
-
Ala
GGC
[ENA]
¡û
>W1610937813
LUPF01000024
Actinomycetota
Nocardioides sp. REDSEA-S22_B2 [LUPF]
9368
9443
+
Ala
GGC
[ENA]
¡û
>W1610937842
LUPG01000086
Actinomycetota
Nocardioides sp. REDSEA-S25_B9 [LUPG]
5818
5743
-
Ala
GGC
[ENA]
¡û
>W1610937885
LUPH01000083
Actinomycetota
Nocardioides sp. REDSEA-S28_B4 [LUPH]
4036
3961
-
Ala
GGC
[ENA]
¡û
>W1610937944
LUPI01000080
Actinomycetota
Nocardioides sp. REDSEA-S30_B4 [LUPI]
81892
81817
-
Ala
GGC
[ENA]
¡û
>W1610937976
LUPJ01000158
Actinomycetota
Nocardioides sp. REDSEA-S31_B4 [LUPJ]
9345
9420
+
Ala
GGC
[ENA]
¡û
>W1610938003
LUPK01000032
Actinomycetota
Nocardioides sp. REDSEA-S33_B3 [LUPK]
101038
100963
-
Ala
GGC
[ENA]
¡û
>W1610938036
LUPL01000009
Actinomycetota
Nocardioides sp. REDSEA-S34_B5 [LUPL]
102476
102401
-
Ala
GGC
[ENA]
¡û
>W1610938081
LUPM01000033
Actinomycetota
Nocardioides sp. REDSEA-S36_B10 [LUPM]
2575
2650
+
Ala
GGC
[ENA]
¡û
>W1610938140
LUPN01000434
Actinomycetota
Nocardioides sp. REDSEA-S37_B12 [LUPN]
848
923
+
Ala
GGC
[ENA]
¡û
>W1610938150
LUPO01000002
Actinomycetota
Nocardioides sp. REDSEA-S39_B2 [LUPO]
101115
101040
-
Ala
GGC
[ENA]
¡û
>W1610938256
LUPQ01000102
Actinomycetota
Nocardioides sp. REDSEA-S43_B3 [LUPQ]
9457
9532
+
Ala
GGC
[ENA]
¡û
>WENV081293
ABEF01041555
Marine planktonic communities from Hawaii Ocean Times Series Station (HOT/ALOHA)
901
978
+
Ala
GGC
[ENA]
>W1710045917
BBFA01000725
Actinomycetota
Nocardioides sp. JCM 18998 [BBFA]
525
600
+
Ala
GGC
[ENA]
¡û
>W1710045926
BBFA01001178
Actinomycetota
Nocardioides sp. JCM 18998 [BBFA]
141
216
+
Ala
GGC
[ENA]
¡û
>W1710045979
BBFC01000504
Actinomycetota
Nocardioides sp. JCM 18999 [BBFC]
450
523
+
Ala
GGC
[ENA]
¡û
>W1710047165
BBGE01001106
Actinomycetota
Nocardioides nitrophenolicus JCM 10703 [BBGE]
129
204
+
Ala
GGC
[ENA]
¡û
>W1710520342
FNFN01000005
Actinomycetota
Nocardioides sp. YR527 [FNFN]
113100
113175
+
Ala
GGC
[ENA]
¡û
>W1710534284
FNRT01000002
Actinomycetota
Nocardioides exalbidus [FNRT]
3061792
3061869
+
Ala
GGC
[ENA]
¡û
>W1710556289
FOKC01000003
Actinomycetota
Nocardioides alpinus [FOKC]
104384
104309
-
Ala
GGC
[ENA]
¡û
>W1710564122
FOQG01000004
Actinomycetota
Nocardioides psychrotolerans [FOQG]
235174
235249
+
Ala
GGC
[ENA]
¡û
>W1710569429
FOUK01000007
Actinomycetota
Pimelobacter simplex [FOUK]
185868
185793
-
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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