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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.239160 (210 seq.)
>W1710802953
LJYE01000115
Alphaproteobacteria
Bradyrhizobium pachyrhizi [LJYE]
58306
58231
-
Thr
CGT
[ENA]
¡û
>W1710802955
LJYF01000002
Alphaproteobacteria
Bradyrhizobium yuanmingense [LJYF]
104741
104816
+
Thr
CGT
[ENA]
¡û
>W1710803005
LJYG01000004
Alphaproteobacteria
Bradyrhizobium manausense [LJYG]
42075
42000
-
Thr
CGT
[ENA]
¡û
>W1710877759
LMQJ01000056
Alphaproteobacteria
Bradyrhizobium sp. Leaf396 [LMQJ]
156278
156203
-
Thr
CGT
[ENA]
¡û
>W1710891432
LNCU01000120
Alphaproteobacteria
Bradyrhizobium macuxiense BR 10303 [LNCU]
171427
171502
+
Thr
CGT
[ENA]
¡û
>W1711067420
LSEF01000100
Alphaproteobacteria
Bradyrhizobium neotropicale [LSEF]
305043
305118
+
Thr
CGT
[ENA]
¡û
>W1711072986
LSIC01000073
Alphaproteobacteria
Bradyrhizobium sp. CCH5-F6 [LSIC]
230632
230707
+
Thr
CGT
[ENA]
¡û
>W1711124797
LUKO01000160
Alphaproteobacteria
Bradyrhizobium liaoningense [LUKO]
493597
493672
+
Thr
CGT
[ENA]
¡û
>W1711129637
LUUB01000129
Alphaproteobacteria
Bradyrhizobium centrolobii BR 10245 [LUUB]
28967
29042
+
Thr
CGT
[ENA]
¡û
>W1711138886
LVEM01000002
Alphaproteobacteria
Bradyrhizobium stylosanthis [LVEM]
189411
189336
-
Thr
CGT
[ENA]
¡û
>W1711180095
LWIG01000001
Alphaproteobacteria
Bradyrhizobium sacchari BR10280 [LWIG]
918060
918135
+
Thr
CGT
[ENA]
¡û
>W1711193142
LWUI01000014
Alphaproteobacteria
Bradyrhizobium elkanii [LWUI]
9145
9220
+
Thr
CGT
[ENA]
¡û
>W1711206725
LXEM01000007
Alphaproteobacteria
Bradyrhizobium elkanii [LXEM]
205244
205169
-
Thr
CGT
[ENA]
¡û
>W131170254
ARFJ01000027
Alphaproteobacteria
Bradyrhizobium japonicum USDA 124 [ARFJ]
28837
28912
+
Thr
CGT
[ENA]
¡û
>W131217302
ATWP01000003
Alphaproteobacteria
Bradyrhizobium japonicum is5 [ATWP]
344755
344830
+
Thr
CGT
[ENA]
¡û
>W131228680
AUGD01000003
Alphaproteobacteria
Bradyrhizobium japonicum in8p8 [AUGD]
170420
170345
-
Thr
CGT
[ENA]
¡û
>W1711487066
MKFI01000005
Alphaproteobacteria
Bradyrhizobium mercantei SEMIA 6399 [MKFI]
72079
72004
-
Thr
CGT
[ENA]
¡û
>W1711613036
MOXO01000492
Alphaproteobacteria
Bradyrhizobium elkanii [MOXO]
307
382
+
Thr
CGT
[ENA]
¡û
>W1711636764
MPVQ01000094
Alphaproteobacteria
Bradyrhizobium brasilense UFLA 03-321 [MPVQ]
54799
54724
-
Thr
CGT
[ENA]
¡û
>W1711928283
NAEX01000163
Alphaproteobacteria
Bradyrhizobium canariense [NAEX]
265
190
-
Thr
CGT
[ENA]
¡û
>W1711928334
NAEY01000152
Alphaproteobacteria
Bradyrhizobium canariense [NAEY]
115961
116036
+
Thr
CGT
[ENA]
¡û
>W1711928377
NAEZ01000159
Alphaproteobacteria
Bradyrhizobium canariense [NAEZ]
265
190
-
Thr
CGT
[ENA]
¡û
>W1711928417
NAFA01000181
Alphaproteobacteria
Bradyrhizobium canariense [NAFA]
115972
116047
+
Thr
CGT
[ENA]
¡û
>W1711928478
NAFB01000174
Alphaproteobacteria
Bradyrhizobium canariense [NAFB]
108007
108082
+
Thr
CGT
[ENA]
¡û
>W1711928529
NAFC01000167
Alphaproteobacteria
Bradyrhizobium canariense [NAFC]
177489
177564
+
Thr
CGT
[ENA]
¡û
>W1711928572
NAFD01000180
Alphaproteobacteria
Bradyrhizobium canariense [NAFD]
43869
43794
-
Thr
CGT
[ENA]
¡û
>W1711928615
NAFE01000213
Alphaproteobacteria
Bradyrhizobium canariense [NAFE]
133990
134065
+
Thr
CGT
[ENA]
¡û
>W1711928665
NAFF01000099
Alphaproteobacteria
Bradyrhizobium canariense [NAFF]
109829
109904
+
Thr
CGT
[ENA]
¡û
>W1711928711
NAFG01000166
Alphaproteobacteria
Bradyrhizobium canariense [NAFG]
109752
109827
+
Thr
CGT
[ENA]
¡û
>W1711928758
NAFH01000163
Alphaproteobacteria
Bradyrhizobium canariense [NAFH]
133991
134066
+
Thr
CGT
[ENA]
¡û
>W1711928809
NAFI01000172
Alphaproteobacteria
Bradyrhizobium canariense [NAFI]
109790
109865
+
Thr
CGT
[ENA]
¡û
>W1711928864
NAFJ01000148
Alphaproteobacteria
Bradyrhizobium canariense [NAFJ]
109489
109564
+
Thr
CGT
[ENA]
¡û
>W1711928906
NAFK01000163
Alphaproteobacteria
Bradyrhizobium canariense [NAFK]
43870
43795
-
Thr
CGT
[ENA]
¡û
>W1711928962
NAFL01000270
Alphaproteobacteria
Bradyrhizobium japonicum [NAFL]
89779
89704
-
Thr
CGT
[ENA]
¡û
>W1712049592
NFUH01000039
Alphaproteobacteria
Bradyrhizobium guangdongense [NFUH]
4930
4855
-
Thr
CGT
[ENA]
¡û
>C171021132
CP013127
Alphaproteobacteria
Bradyrhizobium diazoefficiens USDA 122 [CP013127]
611540
611465
-
Thr
CGT
-
¡û
>C171064703
CP017637
Alphaproteobacteria
Bradyrhizobium japonicum J5 [CP017637]
563571
563496
-
Thr
CGT
-
¡û
>W131164085
ARAG01000005
Alphaproteobacteria
Bradyrhizobium elkanii USDA 76 [ARAG]
11315
11390
+
Thr
CGT
[ENA]
¡û
>W131164982
ARBF01000075
Alphaproteobacteria
Bradyrhizobium sp. WSM2793 WSM2793 [ARBF]
239632
239707
+
Thr
CGT
[ENA]
¡û
>W131167467
ARDH01000008
Alphaproteobacteria
Bradyrhizobium sp. WSM4349 WSM4349 [ARDH]
136856
136931
+
Thr
CGT
[ENA]
¡û
>W131227238
AUEZ01000057
Alphaproteobacteria
Bradyrhizobium sp. Ai1a-2 [AUEZ]
57098
57173
+
Thr
CGT
[ENA]
¡û
>W131227286
AUFA01000020
Alphaproteobacteria
Bradyrhizobium sp. Cp5.3 [AUFA]
5614
5539
-
Thr
CGT
[ENA]
¡û
>W131228547
AUGA01000016
Alphaproteobacteria
Bradyrhizobium sp. th.b2 [AUGA]
5140
5065
-
Thr
CGT
[ENA]
¡û
>C003090
BA000040
Alphaproteobacteria
Bradyrhizobium diazoefficiens USDA 110 USDA110 [BA000040]
604005
603930
-
Thr
CGT
[Ensembl]
¡û
>W141001321
ADOU01000118
Alphaproteobacteria
Bradyrhizobium diazoefficiens SEMIA 5080 [ADOU]
5305
5380
+
Thr
CGT
[ENA]
¡û
>W141007536
AGWZ01000001
Alphaproteobacteria
Afipia felis ATCC 53690 [AGWZ]
2965786
2965861
+
Thr
CGT
[ENA]
¡û
>W141041830
AMCQ01000053
Alphaproteobacteria
Bradyrhizobium sp. CCGE-LA001 [AMCQ]
2546
2471
-
Thr
CGT
[ENA]
¡û
>w001324
AAAF01000015
Alphaproteobacteria
Rhodopseudomonas palustris [AAAF]
83174
83102
-
Thr
CGT
[ENA]
¡û
>W141043060
AMFB01000028
Alphaproteobacteria
Bradyrhizobium sp. DFCI-1 [AMFB]
85160
85235
+
Thr
CGT
[ENA]
¡û
>W141063660
APJD01000019
Alphaproteobacteria
Bradyrhizobium sp. OHSU_III [APJD]
102170
102245
+
Thr
CGT
[ENA]
¡û
>WENV181162575
OEIO01001343
[OEIO] marine metagenome; sea ice
1240
1315
+
Thr
CGT
[ENA]
¢þ
>WENV181167044
OEIU01007142
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
4207
4132
-
Thr
CGT
[ENA]
¢þ
>WENV181167213
OEIU01014143
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
1111
1186
+
Thr
CGT
[ENA]
¢þ
>WENV181167461
OEIU01029931
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
1374
1299
-
Thr
CGT
[ENA]
¢þ
>WENV181172641
OEIV010883576
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
161
86
-
Thr
CGT
[ENA]
¢þ
>WENV181308340
OFIS01005832
[OFIS] sludge metagenome; sludge
527
452
-
Thr
CGT
[ENA]
¢þ
>WENV181316078
OFJS01005119
[OFJS] marine metagenome; sea ice
320
245
-
Thr
CGT
[ENA]
¢þ
>WENV181379335
OFRD01000593
[OFRD] wastewater metagenome; Exp Tend CN 100WW
11950
11875
-
Thr
CGT
[ENA]
¢þ
>WENV181386017
OFRL01000343
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
381
456
+
Thr
CGT
[ENA]
¢þ
>WENV181399869
OFSF01000090
[OFSF] wastewater metagenome; Exp Tend VB 100WW
157
82
-
Thr
CGT
[ENA]
¢þ
>W141150037
AXAB01000013
Alphaproteobacteria
Bradyrhizobium sp. WSM2254 [AXAB]
163690
163765
+
Thr
CGT
[ENA]
¡û
>W141150136
AXAD01000008
Alphaproteobacteria
Bradyrhizobium arachidis USDA 3384 [AXAD]
196793
196868
+
Thr
CGT
[ENA]
¡û
>W141150217
AXAF01000003
Alphaproteobacteria
Bradyrhizobium ottawaense USDA 4 [AXAF]
170822
170747
-
Thr
CGT
[ENA]
¡û
>W141150282
AXAG01000017
Alphaproteobacteria
Bradyrhizobium japonicum USDA 38 [AXAG]
182537
182462
-
Thr
CGT
[ENA]
¡û
>W141150342
AXAH01000040
Alphaproteobacteria
Bradyrhizobium elkanii USDA 3254 [AXAH]
13660
13735
+
Thr
CGT
[ENA]
¡û
>W141150353
AXAI01000003
Alphaproteobacteria
Bradyrhizobium sp. Tv2a-2 [AXAI]
346834
346909
+
Thr
CGT
[ENA]
¡û
>W141150724
AXAP01000026
Alphaproteobacteria
Bradyrhizobium elkanii WSM2783 [AXAP]
75473
75398
-
Thr
CGT
[ENA]
¡û
>W141150994
AXAS01000015
Alphaproteobacteria
Bradyrhizobium sp. Ec3.3 [AXAS]
10825
10900
+
Thr
CGT
[ENA]
¡û
>W141151037
AXAT01000011
Alphaproteobacteria
Bradyrhizobium japonicum USDA 135 [AXAT]
49708
49783
+
Thr
CGT
[ENA]
¡û
>W141151129
AXAV01000007
Alphaproteobacteria
Bradyrhizobium japonicum USDA 6 [AXAV]
189225
189150
-
Thr
CGT
[ENA]
¡û
>W141151210
AXAW01000039
Alphaproteobacteria
Bradyrhizobium elkanii USDA 3259 [AXAW]
49961
49886
-
Thr
CGT
[ENA]
¡û
>W141151251
AXAX01000018
Alphaproteobacteria
Bradyrhizobium diazoefficiens USDA 122 [AXAX]
33891
33816
-
Thr
CGT
[ENA]
¡û
>W141151296
AXAY01000021
Alphaproteobacteria
Bradyrhizobium sp. WSM3983 [AXAY]
5540
5615
+
Thr
CGT
[ENA]
¡û
>W141151333
AXAZ01000027
Alphaproteobacteria
Bradyrhizobium sp. WSM1743 [AXAZ]
88280
88355
+
Thr
CGT
[ENA]
¡û
>W141151499
AXBC01000008
Alphaproteobacteria
Bradyrhizobium genosp. SA-4 SA-4 str. CB756 [AXBC]
178102
178027
-
Thr
CGT
[ENA]
¡û
>W141168814
AXVG01000002
Alphaproteobacteria
Bradyrhizobium japonicum 22 [AXVG]
92341
92266
-
Thr
CGT
[ENA]
¡û
>W141169208
AXVP01000063
Alphaproteobacteria
Bradyrhizobium japonicum USDA 123 [AXVP]
12729
12654
-
Thr
CGT
[ENA]
¡û
>W08007862
ABKN01000001
Alphaproteobacteria
Afipia carboxidovorans OM5 [ABKN]
308183
308111
-
Thr
CGT
[ENA]
¡û
>W141220398
AZXU01000001
Alphaproteobacteria
Bradyrhizobium sp. WSM1417 [AZXU]
1066324
1066399
+
Thr
CGT
[ENA]
¡û
>W141233867
BAWE01000002
Alphaproteobacteria
Bradyrhizobium sp. DOA9 [BAWE]
1378542
1378617
+
Thr
CGT
[ENA]
¡û
>W141261740
CCAZ010000268
Alphaproteobacteria
Afipia felis [CCAZ]
4935
5010
+
Thr
CGT
[ENA]
¡û
>W141275934
JADK01000003
Alphaproteobacteria
Bradyrhizobium sp. URHA0013 [JADK]
1396227
1396302
+
Thr
CGT
[ENA]
¡û
>W141278124
JAFC01000029
Alphaproteobacteria
Bradyrhizobium elkanii USDA 94 [JAFC]
118137
118212
+
Thr
CGT
[ENA]
¡û
>WENV183627376
OOGL01001628
[OOGL] marine metagenome; sea ice
196
271
+
Thr
CGT
[ENA]
¢þ
>WENV183630744
OOGU01001415
[OOGU] marine metagenome; sea ice
3356
3281
-
Thr
CGT
[ENA]
¢þ
>WENV183636473
OOKD01005648
[OOKD] human gut metagenome; Skin biopsy
658
733
+
Thr
CGT
[ENA]
¢þ
>WENV183670886
ORJL010999209
[ORJL] groundwater metagenome; groundwater
2662
2587
-
Thr
CGT
[ENA]
¢þ
>WENV183679793
ORMF010105126
[ORMF] groundwater metagenome; groundwater
1204
1129
-
Thr
CGT
[ENA]
¢þ
>WENV183681312
ORMF010287892
[ORMF] groundwater metagenome; groundwater
657
732
+
Thr
CGT
[ENA]
¢þ
>WENV183681705
ORMF010347858
[ORMF] groundwater metagenome; groundwater
15408
15483
+
Thr
CGT
[ENA]
¢þ
>WENV183686451
ORMF011003070
[ORMF] groundwater metagenome; groundwater
3
78
+
Thr
CGT
[ENA]
¢þ
>WENV183686821
ORMF011056610
[ORMF] groundwater metagenome; groundwater
2692
2767
+
Thr
CGT
[ENA]
¢þ
>WENV183687145
ORMF011103242
[ORMF] groundwater metagenome; groundwater
10158
10083
-
Thr
CGT
[ENA]
¢þ
>WENV183687854
ORMF011199723
[ORMF] groundwater metagenome; groundwater
1289
1214
-
Thr
CGT
[ENA]
¢þ
>WENV170706114
LNAP01001183
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
31575
31500
-
Thr
CGT
[ENA]
¢þ
>WENV170707764
LNAP01032958
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
467
542
+
Thr
CGT
[ENA]
¢þ
>C181113155
CP025113
Alphaproteobacteria
Bradyrhizobium sp. SK17 [CP025113]
1422969
1423044
+
Thr
CGT
-
¡û
>C181178136
CP029425
Alphaproteobacteria
Bradyrhizobium ottawaense OO99 [CP029425]
2469738
2469813
+
Thr
CGT
-
¡û
>C181178199
CP029426
Alphaproteobacteria
Bradyrhizobium amphicarpaeae 39S1MB [CP029426]
6945196
6945271
+
Thr
CGT
-
¡û
>C181178243
CP029427
Alphaproteobacteria
Bradyrhizobium symbiodeficiens 85S1MB [CP029427]
6648637
6648712
+
Thr
CGT
-
¡û
>C181181593
CP029603
Alphaproteobacteria
Bradyrhizobium diazoefficiens XF7 [CP029603]
683686
683611
-
Thr
CGT
-
¡û
>C181203838
LS398110
Alphaproteobacteria
Bradyrhizobium vignae [LS398110]
273271
273346
+
Thr
CGT
-
¡û
>C191019695
CP022219
Alphaproteobacteria
Bradyrhizobium guangxiense CCBAU 53363 [CP022219]
6932454
6932529
+
Thr
CGT
-
¡û
>C191019722
CP022221
Alphaproteobacteria
Bradyrhizobium zhanjiangense CCBAU 51778 [CP022221]
477776
477851
+
Thr
CGT
-
¡û
>C191071658
CP030051
Alphaproteobacteria
Bradyrhizobium guangdongense CCBAU 51649 [CP030051]
306683
306758
+
Thr
CGT
-
¡û
>C191071704
CP030053
Alphaproteobacteria
Bradyrhizobium guangzhouense CCBAU 51670 [CP030053]
335941
336016
+
Thr
CGT
-
¡û
>C191092060
CP032617
Alphaproteobacteria
Bradyrhizobium diazoefficiens 110spc4 [CP032617]
534702
534627
-
Thr
CGT
-
¡û
>C191186639
CP041090
Alphaproteobacteria
Bradyrhizobium symbiodeficiens 65S1MB [CP041090]
5957578
5957653
+
Thr
CGT
-
¡û
>W1910183079
BJNK01000008
Alphaproteobacteria
Bradyrhizobium japonicum NBRC 14783 [BJNK]
28509
28434
-
Thr
CGT
[ENA]
¡û
>W1910183153
BJNL01000105
Alphaproteobacteria
Bradyrhizobium elkanii NBRC 14791 [BJNL]
11068
11143
+
Thr
CGT
[ENA]
¡û
>W1910232032
FPEJ01000001
Alphaproteobacteria
Hyphomicrobium sp. NDB2Meth4 [FPEJ]
518108
518183
+
Thr
CGT
[ENA]
¡û
>W1910598232
LAXE01000001
Alphaproteobacteria
Bradyrhizobium sp. SUTN9-2 [LAXE]
879820
879895
+
Thr
CGT
[ENA]
¡û
>W1910598944
LBJC01000024
Alphaproteobacteria
Bradyrhizobium nanningense CCBAU 53390 [LBJC]
629877
629952
+
Thr
CGT
[ENA]
¡û
>W1910598992
LBJM01000034
Alphaproteobacteria
Bradyrhizobium zhanjiangense CCBAU 51787 [LBJM]
161260
161335
+
Thr
CGT
[ENA]
¡û
>W1910599057
LBJQ01000088
Alphaproteobacteria
Bradyrhizobium nanningense CCBAU 51757 [LBJQ]
40204
40129
-
Thr
CGT
[ENA]
¡û
>W1910611543
LFJC01000003
Alphaproteobacteria
Bradyrhizobium nitroreducens TSA1 [LFJC]
942848
942923
+
Thr
CGT
[ENA]
¡û
>W1910693445
MDEP01000039
Alphaproteobacteria
Bradyrhizobium sp. UASWS1016 [MDEP]
102222
102297
+
Thr
CGT
[ENA]
¡û
>W1910840268
MZXW01000016
Alphaproteobacteria
Bradyrhizobium betae Opo-243 [MZXW]
177082
177007
-
Thr
CGT
[ENA]
¡û
>C09108161
CP001196
Alphaproteobacteria
Afipia carboxidovorans OM5 OM5; ATCC 49405 [CP001196]
307869
307794
-
Thr
CGT
-
¡û
>W1911245268
NSJY01000006
Alphaproteobacteria
Bradyrhizobium sp. UFLA03-84 [NSJY]
195073
195148
+
Thr
CGT
[ENA]
¡û
>W1911409772
NWTE01000002
Alphaproteobacteria
Bradyrhizobium diazoefficiens Y21 [NWTE]
740520
740595
+
Thr
CGT
[ENA]
¡û
>W1911409822
NWTF01000002
Alphaproteobacteria
Bradyrhizobium ottawaense L2 [NWTF]
22392
22317
-
Thr
CGT
[ENA]
¡û
>W1911409929
NWTG01000037
Alphaproteobacteria
Bradyrhizobium sp. C9 [NWTG]
46158
46083
-
Thr
CGT
[ENA]
¡û
>W1911410001
NWTI01000007
Alphaproteobacteria
Bradyrhizobium sp. Y36 [NWTI]
142329
142404
+
Thr
CGT
[ENA]
¡û
>W1911629531
PSRR01000642
Alphaproteobacteria
Bradyrhizobium sp. Leo170 [PSRR]
1828
1753
-
Thr
CGT
[ENA]
¡û
>W1911629577
PSRS01000318
Alphaproteobacteria
Bradyrhizobium sp. Leo121 [PSRS]
5351
5426
+
Thr
CGT
[ENA]
¡û
>W1911629609
PSRT01000075
Alphaproteobacteria
Bradyrhizobium genosp. SA-3 SA-3 Rp7b [PSRT]
40969
40894
-
Thr
CGT
[ENA]
¡û
>W1911817855
QZMV01000003
Alphaproteobacteria
Bradyrhizobium sp. LVM 105 [QZMV]
45835
45760
-
Thr
CGT
[ENA]
¡û
>W1810089280
PGEQ01000001
Alphaproteobacteria
Bradyrhizobium lablabi GAS165 [PGEQ]
5939045
5938970
-
Thr
CGT
[ENA]
¡û
>W1810089644
PGEV01000001
Alphaproteobacteria
Afipia broomeae GAS525 [PGEV]
5718943
5718868
-
Thr
CGT
[ENA]
¡û
>W1810104425
PGVG01000013
Alphaproteobacteria
Bradyrhizobium forestalis INPA54B [PGVG]
42370
42295
-
Thr
CGT
[ENA]
¡û
>W1810289855
PTFE01000009
Alphaproteobacteria
Bradyrhizobium sp. AC87j1 [PTFE]
118858
118933
+
Thr
CGT
[ENA]
¡û
>W1810367880
PVYZ01000016
Alphaproteobacteria
Rhizobium tropici NFR14 [PVYZ]
76551
76626
+
Thr
CGT
[ENA]
¡û
>W1810400111
PYFV01000012
Alphaproteobacteria
Bradyrhizobium sp. MOS004 [PYFV]
136043
135968
-
Thr
CGT
[ENA]
¡û
>W1810400144
PYFW01000001
Alphaproteobacteria
Bradyrhizobium sp. MOS003 [PYFW]
166044
165969
-
Thr
CGT
[ENA]
¡û
>W1810400205
PYFX01000005
Alphaproteobacteria
Bradyrhizobium sp. MOS002 [PYFX]
234880
234805
-
Thr
CGT
[ENA]
¡û
>C151066569
CP010313
Alphaproteobacteria
Bradyrhizobium japonicum E109 [CP010313]
554353
554278
-
Thr
CGT
[Ensembl]
¡û
>W10119552
ADVZ01000001
Alphaproteobacteria
Afipia sp. 1NLS2 [ADVZ]
1483821
1483746
-
Thr
CGT
[ENA]
¡û
>C11116254
CP002821
Alphaproteobacteria
Afipia carboxidovorans OM4 [CP002821]
220839
220914
+
Thr
CGT
[Ensembl]
¡û
>W1510973736
JGCL01000007
Alphaproteobacteria
Bradyrhizobium japonicum FN1 [JGCL]
43047
42972
-
Thr
CGT
[ENA]
¡û
>W1511353623
JRPN01000018
Alphaproteobacteria
Bradyrhizobium japonicum Is-34 [JRPN]
1030314
1030389
+
Thr
CGT
[ENA]
¡û
>W11125818
ADVZ01000001
Alphaproteobacteria
Afipia sp. 1NLS2 [ADVZ]
1483821
1483746
-
Thr
CGT
[ENA]
¡û
>W1511507969
JXOF01000171
Alphaproteobacteria
Bradyrhizobium elkanii UASWS1015 [JXOF]
86673
86598
-
Thr
CGT
[ENA]
¡û
>W1511625959
LCZM01000290
Alphaproteobacteria
Rhodopseudomonas palustris 42OL [LCZM]
15171
15246
+
Thr
CGT
[ENA]
¡û
>W1511681444
LFIP01000147
Alphaproteobacteria
Bradyrhizobium embrapense SEMIA 6208 [LFIP]
195
120
-
Thr
CGT
[ENA]
¡û
>W1511681456
LFIQ01000039
Alphaproteobacteria
Bradyrhizobium pachyrhizi PAC 48 [LFIQ]
454991
455066
+
Thr
CGT
[ENA]
¡û
>W1511684049
LFLZ01000107
Alphaproteobacteria
Bradyrhizobium tropiciagri SEMIA 6148 [LFLZ]
16742
16667
-
Thr
CGT
[ENA]
¡û
>W1511706016
LGTB01000052
Alphaproteobacteria
Bradyrhizobium viridifuturi SEMIA 690 [LGTB]
11405
11480
+
Thr
CGT
[ENA]
¡û
>W1511706679
LGUJ01000002
Alphaproteobacteria
Bradyrhizobium diazoefficiens Is-1 [LGUJ]
179967
179892
-
Thr
CGT
[ENA]
¡û
>C121000499
AP012206
Alphaproteobacteria
Bradyrhizobium japonicum USDA 6 [AP012206]
555182
555107
-
Thr
CGT
[Ensembl]
¡û
>C121000709
AP012279
Alphaproteobacteria
Bradyrhizobium cosmicum S23321 [AP012279]
278048
278123
+
Thr
CGT
[Ensembl]
¡û
>C121002974
CP002826
Alphaproteobacteria
Afipia carboxidovorans OM5 [CP002826]
220840
220915
+
Thr
CGT
-
¡û
>C161001020
AP014685
Alphaproteobacteria
Bradyrhizobium diazoefficiens NK6 [AP014685]
3858194
3858269
+
Thr
CGT
-
¡û
>C161017386
CP007569
Alphaproteobacteria
Bradyrhizobium japonicum SEMIA 5079 [CP007569]
8109157
8109232
+
Thr
CGT
[Ensembl]
¡û
>C161034235
CP011360
Alphaproteobacteria
Bradyrhizobium diazoefficiens USDA 110 [CP011360]
9029464
9029389
-
Thr
CGT
-
¡û
>C161062512
CP013949
Alphaproteobacteria
Bradyrhizobium sp. CCGE-LA001 [CP013949]
278424
278499
+
Thr
CGT
[Ensembl]
¡û
>C161107824
LN901633
Alphaproteobacteria
Bradyrhizobium sp. [LN901633]
299021
299096
+
Thr
CGT
-
¡û
>C161107913
LN907826
Alphaproteobacteria
Bradyrhizobium sp. [LN907826]
851338
851413
+
Thr
CGT
-
¡û
>W121036188
AHLW01000001
Alphaproteobacteria
Bradyrhizobium sp. WSM471 [AHLW]
322657
322732
+
Thr
CGT
[ENA]
¡û
>W121036439
AHMB01000043
Alphaproteobacteria
Bradyrhizobium sp. WSM1253 [AHMB]
301328
301403
+
Thr
CGT
[ENA]
¡û
>W121065281
AJPX01000079
Alphaproteobacteria
Bradyrhizobium japonicum CCBAU 15354 [AJPX]
1470
1395
-
Thr
CGT
[ENA]
¡û
>W121065335
AJPY01000231
Alphaproteobacteria
Bradyrhizobium japonicum CCBAU 15517 [AJPY]
3001
3076
+
Thr
CGT
[ENA]
¡û
>W121065397
AJPZ01000316
Alphaproteobacteria
Bradyrhizobium japonicum CCBAU 15618 [AJPZ]
19819
19744
-
Thr
CGT
[ENA]
¡û
>W121065427
AJQA01000101
Alphaproteobacteria
Bradyrhizobium japonicum CCBAU 25435 [AJQA]
37722
37647
-
Thr
CGT
[ENA]
¡û
>W121065472
AJQB01000132
Alphaproteobacteria
Bradyrhizobium japonicum CCBAU 83623 [AJQB]
21443
21368
-
Thr
CGT
[ENA]
¡û
>W121065530
AJQC01000282
Alphaproteobacteria
Bradyrhizobium liaoningense CCBAU 05525 [AJQC]
694
619
-
Thr
CGT
[ENA]
¡û
>W121065562
AJQD01000002
Alphaproteobacteria
Bradyrhizobium liaoningense CCBAU 83689 [AJQD]
39678
39753
+
Thr
CGT
[ENA]
¡û
>W121065612
AJQE01000094
Alphaproteobacteria
Bradyrhizobium sp. CCBAU 43298 [AJQE]
15349
15274
-
Thr
CGT
[ENA]
¡û
>W121065696
AJQF01000462
Alphaproteobacteria
Bradyrhizobium sp. CCBAU 15544 [AJQF]
8642
8717
+
Thr
CGT
[ENA]
¡û
>W121065724
AJQG01000210
Alphaproteobacteria
Bradyrhizobium sp. CCBAU 15615 [AJQG]
46048
45973
-
Thr
CGT
[ENA]
¡û
>W121065784
AJQH01000285
Alphaproteobacteria
Bradyrhizobium sp. CCBAU 15635 [AJQH]
22732
22657
-
Thr
CGT
[ENA]
¡û
>W121065798
AJQI01000013
Alphaproteobacteria
Bradyrhizobium diazoefficiens CCBAU 41267 [AJQI]
6010
5935
-
Thr
CGT
[ENA]
¡û
>W121065855
AJQJ01000168
Alphaproteobacteria
Bradyrhizobium yuanmingense CCBAU 05623 [AJQJ]
34442
34367
-
Thr
CGT
[ENA]
¡û
>W121065904
AJQK01000124
Alphaproteobacteria
Bradyrhizobium yuanmingense CCBAU 25021 [AJQK]
44698
44623
-
Thr
CGT
[ENA]
¡û
>W121065952
AJQL01000118
Alphaproteobacteria
Bradyrhizobium yuanmingense CCBAU 35157 [AJQL]
12577
12502
-
Thr
CGT
[ENA]
¡û
>W121085097
AKIY01000333
Alphaproteobacteria
Bradyrhizobium sp. YR681 [AKIY]
27875
27950
+
Thr
CGT
[ENA]
¡û
>W121065225
AJPV01000462
Alphaproteobacteria
Bradyrhizobium elkanii CCBAU 05737 [AJPV]
3759
3834
+
Thr
CGT
[ENA]
¡û
>W121065234
AJPW01000042
Alphaproteobacteria
Bradyrhizobium elkanii CCBAU 43297 [AJPW]
41084
41009
-
Thr
CGT
[ENA]
¡û
>W1610049396
BBEX01000346
Alphaproteobacteria
Bradyrhizobium sp. 17-4 [BBEX]
258
333
+
Thr
CGT
[ENA]
¡û
>W1610514408
FMAE01000002
Alphaproteobacteria
Bradyrhizobium yuanmingense [FMAE]
364911
364986
+
Thr
CGT
[ENA]
¡û
>W1610514632
FMAI01000021
Alphaproteobacteria
Bradyrhizobium shewense err11 [FMAI]
133816
133891
+
Thr
CGT
[ENA]
¡û
>W1610549155
JXDL01000001
Alphaproteobacteria
Bradyrhizobium sp. AT1 [JXDL]
4969205
4969130
-
Thr
CGT
[ENA]
¡û
>W1610550306
JXJM01000001
Alphaproteobacteria
Bradyrhizobium sp. DOA1 [JXJM]
6798288
6798213
-
Thr
CGT
[ENA]
¡û
>W1610666810
LJYE01000115
Alphaproteobacteria
Bradyrhizobium pachyrhizi [LJYE]
58306
58231
-
Thr
CGT
[ENA]
¡û
>W1610666812
LJYF01000002
Alphaproteobacteria
Bradyrhizobium yuanmingense [LJYF]
104741
104816
+
Thr
CGT
[ENA]
¡û
>W1610666862
LJYG01000004
Alphaproteobacteria
Bradyrhizobium manausense [LJYG]
42075
42000
-
Thr
CGT
[ENA]
¡û
>W1610740105
LMQJ01000056
Alphaproteobacteria
Bradyrhizobium sp. Leaf396 [LMQJ]
156278
156203
-
Thr
CGT
[ENA]
¡û
>W1610751797
LNCU01000120
Alphaproteobacteria
Bradyrhizobium macuxiense BR 10303 [LNCU]
171427
171502
+
Thr
CGT
[ENA]
¡û
>W1610907990
LSEF01000100
Alphaproteobacteria
Bradyrhizobium neotropicale [LSEF]
305043
305118
+
Thr
CGT
[ENA]
¡û
>W1610912246
LSIC01000073
Alphaproteobacteria
Bradyrhizobium sp. CCH5-F6 [LSIC]
230632
230707
+
Thr
CGT
[ENA]
¡û
>W1610935769
LUKO01000160
Alphaproteobacteria
Bradyrhizobium liaoningense [LUKO]
493597
493672
+
Thr
CGT
[ENA]
¡û
>W1610940710
LUUB01000129
Alphaproteobacteria
Bradyrhizobium centrolobii BR 10245 [LUUB]
28967
29042
+
Thr
CGT
[ENA]
¡û
>W1610949894
LVEM01000002
Alphaproteobacteria
Bradyrhizobium stylosanthis [LVEM]
189411
189336
-
Thr
CGT
[ENA]
¡û
>W1710045795
BBEX01000346
Alphaproteobacteria
Bradyrhizobium sp. 17-4 [BBEX]
258
333
+
Thr
CGT
[ENA]
¡û
>W1710500098
FMAE01000002
Alphaproteobacteria
Bradyrhizobium yuanmingense [FMAE]
364911
364986
+
Thr
CGT
[ENA]
¡û
>W1710500322
FMAI01000021
Alphaproteobacteria
Bradyrhizobium shewense err11 [FMAI]
133816
133891
+
Thr
CGT
[ENA]
¡û
>W1710513065
FMZW01000037
Alphaproteobacteria
Bradyrhizobium brasilense R5 [FMZW]
19916
19991
+
Thr
CGT
[ENA]
¡û
>W1710516745
FNCU01000004
Alphaproteobacteria
Bradyrhizobium sp. Rc2d [FNCU]
251473
251548
+
Thr
CGT
[ENA]
¡û
>W1710536577
FNTH01000001
Alphaproteobacteria
Bradyrhizobium erythrophlei [FNTH]
5354578
5354653
+
Thr
CGT
[ENA]
¡û
>W1710546003
FOBX01000005
Alphaproteobacteria
Bradyrhizobium sp. OK095 [FOBX]
274473
274548
+
Thr
CGT
[ENA]
¡û
>W1710564276
FOQJ01000008
Alphaproteobacteria
Bradyrhizobium sp. cf659 [FOQJ]
112927
113002
+
Thr
CGT
[ENA]
¡û
>W1710564434
FOQM01000020
Alphaproteobacteria
Bradyrhizobium sp. Gha [FOQM]
112840
112915
+
Thr
CGT
[ENA]
¡û
>W1710569828
FOUS01000015
Alphaproteobacteria
Bradyrhizobium sp. Rc3b [FOUS]
168739
168664
-
Thr
CGT
[ENA]
¡û
>W1710571278
FOVU01000001
Alphaproteobacteria
Bradyrhizobium sp. Ghvi [FOVU]
1240607
1240682
+
Thr
CGT
[ENA]
¡û
>W1710578505
FPBQ01000001
Alphaproteobacteria
Bradyrhizobium arachidis [FPBQ]
39074
38999
-
Thr
CGT
[ENA]
¡û
>W1710652729
JXDL01000001
Alphaproteobacteria
Bradyrhizobium sp. AT1 [JXDL]
4969205
4969130
-
Thr
CGT
[ENA]
¡û
>W1710659032
JXJM01000001
Alphaproteobacteria
Bradyrhizobium sp. DOA1 [JXJM]
6798288
6798213
-
Thr
CGT
[ENA]
¡û
>W1710735612
LGHK01000295
Alphaproteobacteria
Bradyrhizobium sp. NAS96.2 [LGHK]
2832
2757
-
Thr
CGT
[ENA]
¡û
>W1710735670
LGHL01000373
Alphaproteobacteria
Bradyrhizobium sp. NAS80.1 [LGHL]
198
123
-
Thr
CGT
[ENA]
¡û
>W1710735680
LGHM01000035
Alphaproteobacteria
Bradyrhizobium sp. AS23.2 [LGHM]
1298
1223
-
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
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(Sample source for ENV)
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Start
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Direction
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Download Sequence
Representative sequence of each cluster
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