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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.239162 (71 seq.)
>W1710991624
LPXV01000015
Bacillota
Levilactobacillus brevis [LPXV]
63103
63177
+
Arg
CCT
[ENA]
¡û
>W1711005246
LQNG01000013
Bacillota
Levilactobacillus brevis [LQNG]
38494
38420
-
Arg
CCT
[ENA]
¡û
>W131184875
ARTH01000045
Bacillota
Levilactobacillus parabrevis ATCC 53295 [ARTH]
5811
5737
-
Arg
CCT
[ENA]
¡û
>W1711373171
MDUA01000001
Bacillota
Levilactobacillus brevis [MDUA]
118409
118335
-
Arg
CCT
[ENA]
¡û
>W1711748619
MULL01000001
Bacillota
Levilactobacillus brevis [MULL]
1531780
1531706
-
Arg
CCT
[ENA]
¡û
>W1711903203
MZMW01000002
Bacillota
Levilactobacillus brevis [MZMW]
73688
73762
+
Arg
CCT
[ENA]
¡û
>W1712056371
NFZZ01000004
Bacillota
Levilactobacillus brevis [NFZZ]
38387
38313
-
Arg
CCT
[ENA]
¡û
>C171037665
CP015338
Bacillota
Levilactobacillus brevis 100D8 [CP015338]
77793
77719
-
Arg
CCT
-
¡û
>C171051201
CP016797
Bacillota
Levilactobacillus brevis TMW 1.2112 [CP016797]
826516
826590
+
Arg
CCT
-
¡û
>C171099164
CP019734
Bacillota
Levilactobacillus brevis TMW 1.2108 [CP019734]
1752485
1752411
-
Arg
CCT
-
¡û
>C171099226
CP019743
Bacillota
Levilactobacillus brevis TMW 1.2111 [CP019743]
1756605
1756531
-
Arg
CCT
-
¡û
>C171099258
CP019750
Bacillota
Levilactobacillus brevis TMW 1.2113 [CP019750]
824385
824459
+
Arg
CCT
-
¡û
>C171119543
CP021479
Bacillota
Levilactobacillus brevis SRCM101174 [CP021479]
1646443
1646369
-
Arg
CCT
-
¡û
>C171121225
CP021674
Bacillota
Levilactobacillus brevis SRCM101106 [CP021674]
1561276
1561202
-
Arg
CCT
-
¡û
>C011306
CP000416
Bacillota
Levilactobacillus brevis ATCC 367 [CP000416]
1544668
1544596
-
Arg
CCT
[Ensembl]
¡û
>W141086240
AUTD01000016
Bacillota
Levilactobacillus brevis EW [AUTD]
63103
63177
+
Arg
CCT
[ENA]
¡û
>W141146279
AWVK01000048
Bacillota
Levilactobacillus brevis ATCC 14869 = DSM 20054 [AWVK]
30158
30232
+
Arg
CCT
[ENA]
¡û
>W141279927
JAGR01000001
Bacillota
Levilactobacillus brevis AG48 [JAGR]
1996794
1996868
+
Arg
CCT
[ENA]
¡û
>WENV183511531
OMJG01000660
[OMJG] food metagenome; Cotija cheese
5388
5314
-
Arg
CCT
[ENA]
¢þ
>WENV170659703
JXWR01035214
[JXWR] soil metagenome; rice field; ambient CO2
1289
1363
+
Arg
CCT
[ENA]
¢þ
>C181052554
CP021456
Bacillota
Levilactobacillus brevis ZLB004 [CP021456]
1727907
1727833
-
Arg
CCT
-
¡û
>C181103362
CP024635
Bacillota
Levilactobacillus brevis BDGP6 [CP024635]
2686992
2687066
+
Arg
CCT
-
¡û
>C181211333
LS483405
Bacillota
Levilactobacillus brevis NCTC13768 [LS483405]
1668834
1668760
-
Arg
CCT
-
¡û
>C191073997
CP031169
Bacillota
Levilactobacillus brevis UCCLBBS124 [CP031169]
1739062
1738988
-
Arg
CCT
-
¡û
>C191074057
CP031174
Bacillota
Levilactobacillus brevis UCCLB556 [CP031174]
1584917
1584843
-
Arg
CCT
-
¡û
>C191074178
CP031185
Bacillota
Levilactobacillus brevis SA-C12 [CP031185]
1666960
1666886
-
Arg
CCT
-
¡û
>C191074241
CP031198
Bacillota
Levilactobacillus brevis UCCLBBS449 [CP031198]
1759253
1759179
-
Arg
CCT
-
¡û
>C191074299
CP031208
Bacillota
Levilactobacillus brevis UCCLB521 [CP031208]
1513131
1513057
-
Arg
CCT
-
¡û
>C191114447
CP033885
Bacillota
Levilactobacillus brevis LMT1-73 [CP033885]
2160950
2160876
-
Arg
CCT
-
¡û
>W1910181317
BJLW01000014
Bacillota
Levilactobacillus brevis NBRC 3960 [BJLW]
38223
38149
-
Arg
CCT
[ENA]
¡û
>W1910181420
BJLZ01000008
Bacillota
Levilactobacillus brevis NBRC 12005 [BJLZ]
42851
42925
+
Arg
CCT
[ENA]
¡û
>W1910182165
BJMR01000009
Bacillota
Levilactobacillus brevis NBRC 13110 [BJMR]
2374
2300
-
Arg
CCT
[ENA]
¡û
>W1910230961
FPCL01000141
Bacillota
Levilactobacillus brevis [FPCL]
38530
38456
-
Arg
CCT
[ENA]
¡û
>W1910230986
FPCM01000039
Bacillota
Levilactobacillus brevis [FPCM]
12101
12175
+
Arg
CCT
[ENA]
¡û
>W1910231037
FPCN01000036
Bacillota
Levilactobacillus brevis [FPCN]
38530
38456
-
Arg
CCT
[ENA]
¡û
>W1910231098
FPCO01000052
Bacillota
Levilactobacillus brevis [FPCO]
38530
38456
-
Arg
CCT
[ENA]
¡û
>W1910231201
FPCQ01000148
Bacillota
Levilactobacillus brevis [FPCQ]
38530
38456
-
Arg
CCT
[ENA]
¡û
>W1910231258
FPCR01000164
Bacillota
Levilactobacillus brevis [FPCR]
38530
38456
-
Arg
CCT
[ENA]
¡û
>W1910922772
NIGI01000038
Bacillota
Levilactobacillus brevis SF15B [NIGI]
16200
16126
-
Arg
CCT
[ENA]
¡û
>W1910922823
NIGJ01000014
Bacillota
Levilactobacillus brevis SF9B [NIGJ]
38727
38653
-
Arg
CCT
[ENA]
¡û
>W1910922900
NIGK01000010
Bacillota
Levilactobacillus brevis ZG1 [NIGK]
283421
283495
+
Arg
CCT
[ENA]
¡û
>W1911386161
NVYO01000001
Bacillota
Levilactobacillus brevis D7 [NVYO]
1818874
1818800
-
Arg
CCT
[ENA]
¡û
>W1810000911
BEWS01000002
Bacillota
Levilactobacillus brevis NBRC 3345 [BEWS]
38253
38179
-
Arg
CCT
[ENA]
¡û
>W1810476109
QAJZ01000028
Bacillota
Levilactobacillus brevis DM9218 [QAJZ]
115101
115175
+
Arg
CCT
[ENA]
¡û
>W1810489204
QAZW01000005
Bacillota
Levilactobacillus brevis DS1_5 [QAZW]
38531
38457
-
Arg
CCT
[ENA]
¡û
>W1810699039
QMCB01000001
Bacillota
Levilactobacillus brevis TUCO-5E [QMCB]
299605
299679
+
Arg
CCT
[ENA]
¡û
>W1810705763
QMJO01000014
Bacillota
Levilactobacillus brevis KMB_615 [QMJO]
18680
18754
+
Arg
CCT
[ENA]
¡û
>W1810706033
QMJT01000023
Bacillota
Levilactobacillus brevis KMB_620 [QMJT]
2456
2382
-
Arg
CCT
[ENA]
¡û
>W1810780436
QQPA01000080
Bacillota
Levilactobacillus brevis WIKIM12 [QQPA]
38438
38364
-
Arg
CCT
[ENA]
¡û
>W1510013593
BBOW01000080
Bacillota
Levilactobacillus brevis WK12 [BBOW]
38438
38364
-
Arg
CCT
[ENA]
¡û
>W1511270453
JOKA01000014
Bacillota
Levilactobacillus brevis DmCS_003 [JOKA]
70388
70462
+
Arg
CCT
[ENA]
¡û
>W1511501782
JXCD01000005
Bacillota
Levilactobacillus brevis 15f [JXCD]
38376
38302
-
Arg
CCT
[ENA]
¡û
>W1511512273
JXUE01000015
Bacillota
Levilactobacillus brevis TMW 1.6 [JXUE]
1789841
1789915
+
Arg
CCT
[ENA]
¡û
>W1511512362
JXUF01000002
Bacillota
Levilactobacillus brevis TMW 1.313 [JXUF]
59017
58943
-
Arg
CCT
[ENA]
¡û
>W1511512388
JXUG01000003
Bacillota
Levilactobacillus brevis TMW 1.465 [JXUG]
931959
932033
+
Arg
CCT
[ENA]
¡û
>W1511591546
LBHR01000004
Bacillota
Levilactobacillus brevis 47f [LBHR]
68827
68901
+
Arg
CCT
[ENA]
¡û
>C161003687
CP005977
Bacillota
Levilactobacillus brevis BSO 464 [CP005977]
1095766
1095692
-
Arg
CCT
-
¡û
>C161086941
CP015398
Bacillota
Levilactobacillus brevis NPS-QW-145 [CP015398]
1949365
1949291
-
Arg
CCT
-
¡û
>W1610032040
AYZH01000002
Bacillota
Levilactobacillus senmaizukei DSM 21775 = NBRC 103853 [AYZH]
33819
33747
-
Arg
CCT
[ENA]
¡û
>W1610032983
AZCP01000002
Bacillota
Levilactobacillus brevis ATCC 14869 = DSM 20054 [AZCP]
38325
38251
-
Arg
CCT
[ENA]
¡û
>W1610033526
AZCZ01000062
Bacillota
Levilactobacillus parabrevis ATCC 53295 [AZCZ]
121
47
-
Arg
CCT
[ENA]
¡û
>W1610073818
BCWD01000004
Bacillota
Levilactobacillus senmaizukei DSM 21775 = NBRC 103853 [BCWD]
91275
91347
+
Arg
CCT
[ENA]
¡û
>C131000198
AP012167
Bacillota
Levilactobacillus brevis KB290 [AP012167]
1534563
1534489
-
Arg
CCT
[Ensembl]
¡û
>W1610529793
JQCI01000049
Bacillota
Levilactobacillus parabrevis [JQCI]
7184
7258
+
Arg
CCT
[ENA]
¡û
>W1610585918
LDEI01000009
Bacillota
Levilactobacillus brevis [LDEI]
43485
43559
+
Arg
CCT
[ENA]
¡û
>W1610855896
LQNG01000013
Bacillota
Levilactobacillus brevis [LQNG]
38494
38420
-
Arg
CCT
[ENA]
¡û
>W1710028967
AYZH01000002
Bacillota
Levilactobacillus senmaizukei DSM 21775 = NBRC 103853 [AYZH]
33819
33747
-
Arg
CCT
[ENA]
¡û
>W1710070936
BCWD01000004
Bacillota
Levilactobacillus senmaizukei DSM 21775 = NBRC 103853 [BCWD]
91275
91347
+
Arg
CCT
[ENA]
¡û
>W1710631383
JQCI01000049
Bacillota
Levilactobacillus parabrevis [JQCI]
7184
7258
+
Arg
CCT
[ENA]
¡û
>W1710705198
LDEI01000009
Bacillota
Levilactobacillus brevis [LDEI]
43485
43559
+
Arg
CCT
[ENA]
¡û
>W1710735890
LGIX01000018
Bacillota
Levilactobacillus brevis [LGIX]
38982
38908
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK