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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.239163 (83 seq.)
>W1710991636
LPXV01000027
Bacillota
Levilactobacillus brevis [LPXV]
1061
986
-
His
GTG
[ENA]
¡û
>W1711005242
LQNG01000002
Bacillota
Levilactobacillus brevis [LQNG]
90701
90626
-
His
GTG
[ENA]
¡û
>W1711373182
MDUA01000001
Bacillota
Levilactobacillus brevis [MDUA]
74146
74071
-
His
GTG
[ENA]
¡û
>W1711748630
MULL01000001
Bacillota
Levilactobacillus brevis [MULL]
1487524
1487449
-
His
GTG
[ENA]
¡û
>W1711903214
MZMW01000004
Bacillota
Levilactobacillus brevis [MZMW]
314797
314722
-
His
GTG
[ENA]
¡û
>W1712056388
NFZZ01000008
Bacillota
Levilactobacillus brevis [NFZZ]
136444
136369
-
His
GTG
[ENA]
¡û
>C171037676
CP015338
Bacillota
Levilactobacillus brevis 100D8 [CP015338]
33538
33463
-
His
GTG
-
¡û
>C171051212
CP016797
Bacillota
Levilactobacillus brevis TMW 1.2112 [CP016797]
872580
872655
+
His
GTG
-
¡û
>C171099175
CP019734
Bacillota
Levilactobacillus brevis TMW 1.2108 [CP019734]
1708228
1708153
-
His
GTG
-
¡û
>C171099237
CP019743
Bacillota
Levilactobacillus brevis TMW 1.2111 [CP019743]
1712358
1712283
-
His
GTG
-
¡û
>C171099269
CP019750
Bacillota
Levilactobacillus brevis TMW 1.2113 [CP019750]
870449
870524
+
His
GTG
-
¡û
>C171119554
CP021479
Bacillota
Levilactobacillus brevis SRCM101174 [CP021479]
1601091
1601016
-
His
GTG
-
¡û
>C171121236
CP021674
Bacillota
Levilactobacillus brevis SRCM101106 [CP021674]
1517019
1516944
-
His
GTG
-
¡û
>C171131699
LT854705
Bacillota
Levilactobacillus zymae ACA-DC 3411 [LT854705]
983077
983152
+
His
GTG
-
¡û
>C011317
CP000416
Bacillota
Levilactobacillus brevis ATCC 367 [CP000416]
1500414
1500339
-
His
GTG
[Ensembl]
¡û
>W141086252
AUTD01000033
Bacillota
Levilactobacillus brevis EW [AUTD]
1061
986
-
His
GTG
[ENA]
¡û
>W141146274
AWVK01000029
Bacillota
Levilactobacillus brevis ATCC 14869 = DSM 20054 [AWVK]
26044
25969
-
His
GTG
[ENA]
¡û
>W141279938
JAGR01000001
Bacillota
Levilactobacillus brevis AG48 [JAGR]
2041051
2041126
+
His
GTG
[ENA]
¡û
>WENV183511564
OMJG01000792
[OMJG] food metagenome; Cotija cheese
148
221
+
His
GTG
[ENA]
¢þ
>WENV170659365
JXWR01004193
[JXWR] soil metagenome; rice field; ambient CO2
2080
2005
-
His
GTG
[ENA]
¢þ
>C181052565
CP021456
Bacillota
Levilactobacillus brevis ZLB004 [CP021456]
1683640
1683567
-
His
GTG
-
¡û
>C181103373
CP024635
Bacillota
Levilactobacillus brevis BDGP6 [CP024635]
2731249
2731322
+
His
GTG
-
¡û
>C181211344
LS483405
Bacillota
Levilactobacillus brevis NCTC13768 [LS483405]
1624578
1624505
-
His
GTG
-
¡û
>C191074008
CP031169
Bacillota
Levilactobacillus brevis UCCLBBS124 [CP031169]
1694798
1694725
-
His
GTG
-
¡û
>C191074068
CP031174
Bacillota
Levilactobacillus brevis UCCLB556 [CP031174]
1540661
1540588
-
His
GTG
-
¡û
>C191074097
CP031182
Bacillota
Levilactobacillus brevis UCCLB95 [CP031182]
808126
808199
+
His
GTG
-
¡û
>C191074189
CP031185
Bacillota
Levilactobacillus brevis SA-C12 [CP031185]
1621259
1621186
-
His
GTG
-
¡û
>C191074252
CP031198
Bacillota
Levilactobacillus brevis UCCLBBS449 [CP031198]
1714987
1714914
-
His
GTG
-
¡û
>C191074310
CP031208
Bacillota
Levilactobacillus brevis UCCLB521 [CP031208]
1468878
1468805
-
His
GTG
-
¡û
>C191114458
CP033885
Bacillota
Levilactobacillus brevis LMT1-73 [CP033885]
2116685
2116612
-
His
GTG
-
¡û
>W1910177836
BJEB01000011
Bacillota
Paucilactobacillus nenjiangensis 11102 [BJEB]
41479
41406
-
His
GTG
[ENA]
¡û
>W1910181332
BJLW01000095
Bacillota
Levilactobacillus brevis NBRC 3960 [BJLW]
2291
2218
-
His
GTG
[ENA]
¡û
>W1910181442
BJLZ01000054
Bacillota
Levilactobacillus brevis NBRC 12005 [BJLZ]
3490
3417
-
His
GTG
[ENA]
¡û
>W1910182186
BJMR01000038
Bacillota
Levilactobacillus brevis NBRC 13110 [BJMR]
17918
17845
-
His
GTG
[ENA]
¡û
>W1910230971
FPCL01000153
Bacillota
Levilactobacillus brevis [FPCL]
780
853
+
His
GTG
[ENA]
¡û
>W1910231026
FPCM01000182
Bacillota
Levilactobacillus brevis [FPCM]
780
853
+
His
GTG
[ENA]
¡û
>W1910231053
FPCN01000076
Bacillota
Levilactobacillus brevis [FPCN]
780
853
+
His
GTG
[ENA]
¡û
>W1910231121
FPCO01000131
Bacillota
Levilactobacillus brevis [FPCO]
780
853
+
His
GTG
[ENA]
¡û
>W1910231180
FPCQ01000126
Bacillota
Levilactobacillus brevis [FPCQ]
780
853
+
His
GTG
[ENA]
¡û
>W1910231269
FPCR01000181
Bacillota
Levilactobacillus brevis [FPCR]
2403
2330
-
His
GTG
[ENA]
¡û
>W1910922785
NIGI01000087
Bacillota
Levilactobacillus brevis SF15B [NIGI]
35
108
+
His
GTG
[ENA]
¡û
>W1910922837
NIGJ01000038
Bacillota
Levilactobacillus brevis SF9B [NIGJ]
57727
57654
-
His
GTG
[ENA]
¡û
>W1910922888
NIGK01000009
Bacillota
Levilactobacillus brevis ZG1 [NIGK]
59752
59679
-
His
GTG
[ENA]
¡û
>W1911386172
NVYO01000001
Bacillota
Levilactobacillus brevis D7 [NVYO]
1774619
1774546
-
His
GTG
[ENA]
¡û
>W1911770114
QXIL01000025
Bacillota
Levilactobacillus suantsaii BCRC 12945 [QXIL]
28744
28671
-
His
GTG
[ENA]
¡û
>W1810000927
BEWS01000021
Bacillota
Levilactobacillus brevis NBRC 3345 [BEWS]
653
726
+
His
GTG
[ENA]
¡û
>W1810476117
QAJZ01000029
Bacillota
Levilactobacillus brevis DM9218 [QAJZ]
653
726
+
His
GTG
[ENA]
¡û
>W1810489246
QAZW01000039
Bacillota
Levilactobacillus brevis DS1_5 [QAZW]
18042
17969
-
His
GTG
[ENA]
¡û
>W1810699084
QMCB01000034
Bacillota
Levilactobacillus brevis TUCO-5E [QMCB]
9854
9781
-
His
GTG
[ENA]
¡û
>W1810705789
QMJO01000060
Bacillota
Levilactobacillus brevis KMB_615 [QMJO]
9489
9416
-
His
GTG
[ENA]
¡û
>W1810706051
QMJT01000055
Bacillota
Levilactobacillus brevis KMB_620 [QMJT]
3509
3436
-
His
GTG
[ENA]
¡û
>W1810780432
QQPA01000079
Bacillota
Levilactobacillus brevis WIKIM12 [QQPA]
114396
114323
-
His
GTG
[ENA]
¡û
>W1510013589
BBOW01000079
Bacillota
Levilactobacillus brevis WK12 [BBOW]
114396
114321
-
His
GTG
[ENA]
¡û
>W1511270457
JOKA01000026
Bacillota
Levilactobacillus brevis DmCS_003 [JOKA]
168
243
+
His
GTG
[ENA]
¡û
>W1511501829
JXCD01000078
Bacillota
Levilactobacillus brevis 15f [JXCD]
1599
1524
-
His
GTG
[ENA]
¡û
>W1511512282
JXUE01000015
Bacillota
Levilactobacillus brevis TMW 1.6 [JXUE]
1833895
1833970
+
His
GTG
[ENA]
¡û
>W1511512373
JXUF01000002
Bacillota
Levilactobacillus brevis TMW 1.313 [JXUF]
14469
14394
-
His
GTG
[ENA]
¡û
>W1511512423
JXUG01000021
Bacillota
Levilactobacillus brevis TMW 1.465 [JXUG]
123294
123219
-
His
GTG
[ENA]
¡û
>W1511538796
JZCR01000023
Bacillota
Levilactobacillus spicheri LP38 [JZCR]
928
1003
+
His
GTG
[ENA]
¡û
>W1511591567
LBHR01000040
Bacillota
Levilactobacillus brevis 47f [LBHR]
731
806
+
His
GTG
[ENA]
¡û
>W1511679276
LFEE01000005
Bacillota
Lactiplantibacillus herbarum TCF032-E4 [LFEE]
587
660
+
His
GTG
[ENA]
¡û
>W1511679311
LFEE01000037
Bacillota
Lactiplantibacillus herbarum TCF032-E4 [LFEE]
63562
63635
+
His
GTG
[ENA]
¡û
>C161086950
CP015398
Bacillota
Levilactobacillus brevis NPS-QW-145 [CP015398]
1906956
1906881
-
His
GTG
-
¡û
>W1610032056
AYZH01000017
Bacillota
Levilactobacillus senmaizukei DSM 21775 = NBRC 103853 [AYZH]
7165
7240
+
His
GTG
[ENA]
¡û
>W1610032966
AZCP01000001
Bacillota
Levilactobacillus brevis ATCC 14869 = DSM 20054 [AZCP]
739
814
+
His
GTG
[ENA]
¡û
>W1610034572
AZDV01000026
Bacillota
Levilactobacillus acidifarinae DSM 19394 [AZDV]
745724
745649
-
His
GTG
[ENA]
¡û
>W1610034620
AZDW01000052
Bacillota
Levilactobacillus zymae DSM 19395 [AZDW]
804
879
+
His
GTG
[ENA]
¡û
>W1610036181
AZFC01000017
Bacillota
Levilactobacillus spicheri DSM 15429 [AZFC]
915
990
+
His
GTG
[ENA]
¡û
>W1610037002
AZFS01000063
Bacillota
Levilactobacillus hammesii DSM 16381 [AZFS]
442
367
-
His
GTG
[ENA]
¡û
>W1610073835
BCWD01000035
Bacillota
Levilactobacillus senmaizukei DSM 21775 = NBRC 103853 [BCWD]
12917
12842
-
His
GTG
[ENA]
¡û
>C131000209
AP012167
Bacillota
Levilactobacillus brevis KB290 [AP012167]
1490308
1490233
-
His
GTG
[Ensembl]
¡û
>W1610529759
JQCI01000015
Bacillota
Levilactobacillus parabrevis [JQCI]
61331
61258
-
His
GTG
[ENA]
¡û
>W1610585908
LDEI01000001
Bacillota
Levilactobacillus brevis [LDEI]
254472
254397
-
His
GTG
[ENA]
¡û
>W1610855892
LQNG01000002
Bacillota
Levilactobacillus brevis [LQNG]
90701
90626
-
His
GTG
[ENA]
¡û
>W1710028983
AYZH01000017
Bacillota
Levilactobacillus senmaizukei DSM 21775 = NBRC 103853 [AYZH]
7165
7240
+
His
GTG
[ENA]
¡û
>W1710031699
AZDV01000026
Bacillota
Levilactobacillus acidifarinae DSM 19394 [AZDV]
745724
745649
-
His
GTG
[ENA]
¡û
>W1710031747
AZDW01000052
Bacillota
Levilactobacillus zymae DSM 19395 [AZDW]
804
879
+
His
GTG
[ENA]
¡û
>W1710033220
AZFC01000017
Bacillota
Levilactobacillus spicheri DSM 15429 [AZFC]
915
990
+
His
GTG
[ENA]
¡û
>W1710034041
AZFS01000063
Bacillota
Levilactobacillus hammesii DSM 16381 [AZFS]
442
367
-
His
GTG
[ENA]
¡û
>W1710070953
BCWD01000035
Bacillota
Levilactobacillus senmaizukei DSM 21775 = NBRC 103853 [BCWD]
12917
12842
-
His
GTG
[ENA]
¡û
>W1710631349
JQCI01000015
Bacillota
Levilactobacillus parabrevis [JQCI]
61331
61258
-
His
GTG
[ENA]
¡û
>W1710705188
LDEI01000001
Bacillota
Levilactobacillus brevis [LDEI]
254472
254397
-
His
GTG
[ENA]
¡û
>W1710735932
LGIX01000094
Bacillota
Levilactobacillus brevis [LGIX]
2584
2509
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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