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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.239167 (47 seq.)
>W1710989975
LPWU01000133
Alphaproteobacteria
Acetobacter pasteurianus [LPWU]
45367
45292
-
His
GTG
[ENA]
¡û
>W1711257945
LYUD01000099
Alphaproteobacteria
Acetobacter pasteurianus [LYUD]
136085
136010
-
His
GTG
[ENA]
¡û
>C171036192
CP015164
Alphaproteobacteria
Acetobacter ascendens LMG 1590 [CP015164]
223077
223002
-
His
GTG
-
¡û
>C171036195
CP015168
Alphaproteobacteria
Acetobacter ascendens LMG 1591 [CP015168]
92073
92148
+
His
GTG
-
¡û
>C171120252
CP021509
Alphaproteobacteria
Acetobacter pasteurianus subsp. pasteurianus SRCM101342 [CP021509]
609388
609463
+
His
GTG
-
¡û
>C171120309
CP021524
Alphaproteobacteria
Acetobacter ascendens SRCM101447 [CP021524]
607816
607891
+
His
GTG
-
¡û
>C171126408
CP021922
Alphaproteobacteria
Acetobacter pasteurianus subsp. pasteurianus SRCM101468 [CP021922]
606900
606975
+
His
GTG
-
¡û
>W08009488
ABPH01000001
Alphaproteobacteria
Gluconacetobacter diazotrophicus PAl 5 [ABPH]
447735
447663
-
His
GTG
[ENA]
¡û
>W141224570
BAIN01000037
Alphaproteobacteria
Acetobacter papayae JCM 25143 [BAIN]
11329
11254
-
His
GTG
[ENA]
¡û
>W141226105
BAJU01000006
Alphaproteobacteria
Acetobacter okinawensis JCM 25146 [BAJU]
44220
44145
-
His
GTG
[ENA]
¡û
>C08005233
AM889285
Alphaproteobacteria
Gluconacetobacter diazotrophicus PA1 5 PAl 5 [AM889285]
523173
523248
+
His
GTG
[Ensembl]
¡û
>WENV170669498
LAHS01000342
[LAHS] activated sludge metagenome; sample C-1; Sludge from hydrolytic chamber (first chamber) of Anaerobic Baffled Reactor over
95009
94934
-
His
GTG
[ENA]
¢þ
>C181063347
CP022374
Alphaproteobacteria
Acetobacter oryzifermentans dm [CP022374]
696913
696838
-
His
GTG
-
¡û
>C181077161
CP023189
Alphaproteobacteria
Acetobacter pomorum SH [CP023189]
2264541
2264616
+
His
GTG
-
¡û
>W1910007910
BDER01000014
Alphaproteobacteria
Acetobacter pasteurianus subsp. pasteurianus LMG 1262 = NBRC 106471 [BDER]
46314
46239
-
His
GTG
[ENA]
¡û
>W1910007953
BDES01000006
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3188 [BDES]
170694
170619
-
His
GTG
[ENA]
¡û
>W1910008016
BDET01000021
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3222 [BDET]
4653
4578
-
His
GTG
[ENA]
¡û
>W1910008063
BDEU01000017
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3277 [BDEU]
20224
20149
-
His
GTG
[ENA]
¡û
>W1910008117
BDEV01000018
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3278 [BDEV]
20225
20150
-
His
GTG
[ENA]
¡û
>W1910008175
BDEW01000019
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3279 [BDEW]
44099
44024
-
His
GTG
[ENA]
¡û
>W1910008222
BDEX01000016
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3280 [BDEX]
20224
20149
-
His
GTG
[ENA]
¡û
>W1910008281
BDEY01000019
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3284 [BDEY]
14199
14124
-
His
GTG
[ENA]
¡û
>W1910008328
BDEZ01000006
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3299 [BDEZ]
184499
184424
-
His
GTG
[ENA]
¡û
>W1910181783
BJMI01000010
Alphaproteobacteria
Gluconacetobacter liquefaciens NBRC 12388 [BJMI]
30407
30482
+
His
GTG
[ENA]
¡û
>C141012372
HF677570
Alphaproteobacteria
Acetobacter pasteurianus 386B [HF677570]
2196001
2195926
-
His
GTG
[Ensembl]
¡û
>W1910657453
MAPU01000013
Alphaproteobacteria
Acetobacter pasteurianus BCRC 14118 [MAPU]
61161
61086
-
His
GTG
[ENA]
¡û
>W1910753233
MKHC01000030
Alphaproteobacteria
Acetobacter pasteurianus BCRC14145 [MKHC]
15009
14934
-
His
GTG
[ENA]
¡û
>W1910871837
NCXK01000001
Alphaproteobacteria
Acetobacter fabarum KR [NCXK]
615846
615921
+
His
GTG
[ENA]
¡û
>W1810053996
PDEU01000005
Alphaproteobacteria
Acetobacter fabarum OG2 [PDEU]
48803
48728
-
His
GTG
[ENA]
¡û
>C151091097
CP012111
Alphaproteobacteria
Acetobacter pasteurianus Ab3 [CP012111]
1510963
1510888
-
His
GTG
[Ensembl]
¡û
>C10100693
AP011163
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-01-42C [AP011163]
652627
652552
-
His
GTG
[Ensembl]
¡û
>C10100750
AP011121
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-01 [AP011121]
652627
652552
-
His
GTG
[Ensembl]
¡û
>C10100807
AP011128
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-03 [AP011128]
652621
652546
-
His
GTG
[Ensembl]
¡û
>C10100864
AP011135
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-07 [AP011135]
652621
652546
-
His
GTG
[Ensembl]
¡û
>C10100921
AP011170
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-12 [AP011170]
652621
652546
-
His
GTG
[Ensembl]
¡û
>C10100978
AP011142
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-22 [AP011142]
652621
652546
-
His
GTG
[Ensembl]
¡û
>C10101035
AP011149
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-26 [AP011149]
652621
652546
-
His
GTG
[Ensembl]
¡û
>C10101092
AP011156
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-32 [AP011156]
652621
652546
-
His
GTG
[Ensembl]
¡û
>C161001934
AP014881
Alphaproteobacteria
Acetobacter pasteurianus NBRC 101655 [AP014881]
613885
613810
-
His
GTG
-
¡û
>C161031481
CP011120
Alphaproteobacteria
Acetobacter oryzifermentans SLV-7 [CP011120]
746515
746440
-
His
GTG
[Ensembl]
¡û
>C161105588
LN609302
Alphaproteobacteria
Acetobacter ghanensis LMG 23848T [LN609302]
1067683
1067608
-
His
GTG
[Ensembl]
¡û
>W121122948
BACF01000001
Alphaproteobacteria
Acetobacter pasteurianus NBRC 101655 [BACF]
45367
45292
-
His
GTG
[ENA]
¡û
>W121122995
BACG01000005
Alphaproteobacteria
Acetobacter pasteurianus subsp. pasteurianus LMG 1262 [BACG]
46172
46097
-
His
GTG
[ENA]
¡û
>W121126870
CADO01000026
Alphaproteobacteria
Acetobacter pasteurianus subsp. pasteurianus LMG 1262 [CADO]
46200
46125
-
His
GTG
[ENA]
¡û
>W121126923
CADQ01000100
Alphaproteobacteria
Acetobacter pasteurianus 3P3 [CADQ]
200399
200474
+
His
GTG
[ENA]
¡û
>W1611020417
LYUD01000099
Alphaproteobacteria
Acetobacter pasteurianus [LYUD]
136085
136010
-
His
GTG
[ENA]
¡û
>W1710624664
JOPD01000002
Alphaproteobacteria
Acetobacter sp. DsW_54 [JOPD]
24039
23964
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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