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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.239236 (118 seq.)
>W1710881945
LMTK01000042
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [LMTK]
455
380
-
Lys
CTT
[ENA]
¡û
>W1711071554
LSGV01000026
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [LSGV]
199
124
-
Lys
CTT
[ENA]
¡û
>W1711071650
LSGW01000049
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [LSGW]
242
167
-
Lys
CTT
[ENA]
¡û
>W1711071734
LSGX01000060
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [LSGX]
220823
220898
+
Lys
CTT
[ENA]
¡û
>W1711071818
LSGY01000101
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [LSGY]
52763
52688
-
Lys
CTT
[ENA]
¡û
>W1711121185
LUHO01000231
Gammaproteobacteria
Aeromonas salmonicida [LUHO]
5750
5675
-
Lys
CTT
[ENA]
¡û
>W1711121191
LUHP01000001
Gammaproteobacteria
Aeromonas salmonicida [LUHP]
221998
222073
+
Lys
CTT
[ENA]
¡û
>W1711262130
LYXO01000039
Gammaproteobacteria
Aeromonas piscicola [LYXO]
147
72
-
Lys
CTT
[ENA]
¡û
>W131044053
AMQG01000058
Gammaproteobacteria
Aeromonas salmonicida subsp. achromogenes AS03 [AMQG]
90
15
-
Lys
CTT
[ENA]
¡û
>W1711429173
MIIM01000073
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [MIIM]
120827
120902
+
Lys
CTT
[ENA]
¡û
>W1711429238
MIIN01000028
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [MIIN]
221171
221246
+
Lys
CTT
[ENA]
¡û
>W1711429325
MIIO01000004
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [MIIO]
167361
167436
+
Lys
CTT
[ENA]
¡û
>W1711429431
MIIP01000027
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [MIIP]
120821
120896
+
Lys
CTT
[ENA]
¡û
>W1711429551
MIIQ01000025
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [MIIQ]
221198
221273
+
Lys
CTT
[ENA]
¡û
>W1711429654
MIIR01000029
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [MIIR]
221198
221273
+
Lys
CTT
[ENA]
¡û
>W1711429753
MIIS01000030
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [MIIS]
221183
221258
+
Lys
CTT
[ENA]
¡û
>W1711429854
MIIT01000022
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [MIIT]
221183
221258
+
Lys
CTT
[ENA]
¡û
>W1711429954
MIIU01000045
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [MIIU]
221170
221245
+
Lys
CTT
[ENA]
¡û
>W1711437903
MIPW01000006
Gammaproteobacteria
Alteromonas macleodii [MIPW]
1107607
1107682
+
Lys
TTT
[ENA]
¡û
>W1711437904
MIPW01000006
Gammaproteobacteria
Alteromonas macleodii [MIPW]
1107707
1107782
+
Lys
TTT
[ENA]
¡û
>W1711437905
MIPW01000006
Gammaproteobacteria
Alteromonas macleodii [MIPW]
1107821
1107896
+
Lys
TTT
[ENA]
¡û
>W1711634954
MPUI01000031
Gammaproteobacteria
Pectobacterium actinidiae subsp. actinidiae [MPUI]
3983
4058
+
Lys
CTT
[ENA]
¡û
>W1711718241
MTHI01000006
Gammaproteobacteria
Yersinia enterocolitica [MTHI]
6867
6792
-
Lys
CTT
[ENA]
¡û
>W1711956082
NBTD01000001
Gammaproteobacteria
Yersinia enterocolitica [NBTD]
1625596
1625521
-
Lys
CTT
[ENA]
¡û
>W1712080690
NHMW01000004
Gammaproteobacteria
Yersinia pestis subsp. microtus bv. Altaica [NHMW]
68062
68137
+
Lys
CTT
[ENA]
¡û
>W1712080959
NHNA01000012
Gammaproteobacteria
Yersinia pestis subsp. microtus bv. Altaica [NHNA]
68062
68137
+
Lys
CTT
[ENA]
¡û
>W1712081082
NHNC01000009
Gammaproteobacteria
Yersinia pestis subsp. microtus bv. Xilingolensis [NHNC]
68062
68137
+
Lys
CTT
[ENA]
¡û
>C171121043
CP021654
Gammaproteobacteria
Aeromonas salmonicida O23A [CP021654]
3040789
3040714
-
Lys
CTT
-
¡û
>W131244946
CAQV01000074
Gammaproteobacteria
Yersinia pseudotuberculosis B-6863 [CAQV]
6549
6474
-
Lys
CTT
[ENA]
¡û
>C001050
CP000644
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida A449 [CP000644]
766579
766654
+
Lys
CTT
[Ensembl]
¡û
>WENV180112671
OAPP01066692
[OAPP] marine metagenome; Surface water
291
366
+
Asn
GTT
[ENA]
¢þ
>WENV180285313
OBID01328702
[OBID] metagenome; sludge
80
155
+
Lys
CTT
[ENA]
¢þ
>WENV181306679
OFIM01000400
[OFIM] marine metagenome; seawater
2566
2641
+
Lys
TTT
[ENA]
¢þ
>W141223958
BAEQ01000024
Gammaproteobacteria
Glaciecola pallidula DSM 14239 = ACAM 615 [BAEQ]
11375
11300
-
Lys
TTT
[ENA]
¡û
>W141223959
BAEQ01000024
Gammaproteobacteria
Glaciecola pallidula DSM 14239 = ACAM 615 [BAEQ]
11270
11195
-
Lys
TTT
[ENA]
¡û
>W141234626
BAWQ01000029
Gammaproteobacteria
Aeromonas salmonicida subsp. masoucida NBRC 13784 [BAWQ]
48847
48922
+
Lys
CTT
[ENA]
¡û
>W141247819
CBLG010000176
Gammaproteobacteria
Yersinia wautersii WP-930601 [CBLG]
6599
6524
-
Lys
CTT
[ENA]
¡û
>W141247847
CBLH010002017
Gammaproteobacteria
Yersinia sp. WP-931109 [CBLH] WP-931109 [CBLH]
1361
1436
+
Lys
CTT
[ENA]
¡û
>WENV170417496
CEUL01347348
[CEUL] marine metagenome genome assembly TARA_124_MIX_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
805
880
+
Lys
TTT
[ENA]
¢þ
>W141451790
JFBK01000001
Gammaproteobacteria
Alteromonas sp. ALT199 [JFBK]
839462
839537
+
Lys
TTT
[ENA]
¡û
>W141451791
JFBK01000001
Gammaproteobacteria
Alteromonas sp. ALT199 [JFBK]
839562
839637
+
Lys
TTT
[ENA]
¡û
>W141451792
JFBK01000001
Gammaproteobacteria
Alteromonas sp. ALT199 [JFBK]
839675
839750
+
Lys
TTT
[ENA]
¡û
>WENV170821351
MDSY01020722
[MDSY] marine metagenome; seawater
1864
1789
-
Lys
TTT
[ENA]
¢þ
>WENV170825920
MDSY01102423
[MDSY] marine metagenome; seawater
78
3
-
Lys
TTT
[ENA]
¢þ
>WENV170826175
MDSY01106629
[MDSY] marine metagenome; seawater
35
110
+
Glu
TTC
[ENA]
¢þ
>C181023785
CP017143
Gammaproteobacteria
Aeromonas salmonicida subsp. masoucida RFAS1 [CP017143]
1702458
1702533
+
Lys
CTT
-
¡û
>C181060059
CP022175
Gammaproteobacteria
Aeromonas salmonicida S121 [CP022175]
790723
790798
+
Lys
CTT
-
¡û
>C181060178
CP022181
Gammaproteobacteria
Aeromonas salmonicida S44 [CP022181]
787904
787979
+
Lys
CTT
-
¡û
>C181060297
CP022186
Gammaproteobacteria
Aeromonas salmonicida S68 [CP022186]
790729
790804
+
Lys
CTT
-
¡û
>C181064589
CP022426
Gammaproteobacteria
Aeromonas salmonicida subsp. pectinolytica 34mel [CP022426]
1033986
1034061
+
Lys
CTT
-
¡û
>C181068304
CP022550
Gammaproteobacteria
Aeromonas salmonicida A527 [CP022550]
744792
744867
+
Lys
CTT
-
¡û
>C181091099
CP023818
Gammaproteobacteria
Aeromonas sp. CA23 [CP023818]
1869841
1869916
+
Lys
CTT
-
¡û
>C181160720
CP027856
Gammaproteobacteria
Aeromonas rivipollensis KN-Mc-11N1 [CP027856]
111410
111335
-
Lys
CTT
-
¡û
>C181160722
CP027856
Gammaproteobacteria
Aeromonas rivipollensis KN-Mc-11N1 [CP027856]
111190
111115
-
Lys
CTT
-
¡û
>C191049987
CP027000
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida 01-B526 [CP027000]
760250
760325
+
Lys
CTT
-
¡û
>C191209411
LR134376
Gammaproteobacteria
Aeromonas encheleia NCTC12917 [LR134376]
752340
752415
+
Lys
CTT
-
¡û
>W09103776
AAKP01000024
Gammaproteobacteria
Pseudoalteromonas atlantica T6c [AAKP] T6c [AAKP]
69554
69479
-
Lys
TTT
[ENA]
¡û
>W09103777
AAKP01000024
Gammaproteobacteria
Pseudoalteromonas atlantica T6c [AAKP] T6c [AAKP]
69443
69368
-
Lys
TTT
[ENA]
¡û
>W09110760
ABVX01000007
Gammaproteobacteria
Pectobacterium brasiliense subsp. brasiliensis PBR1692 [ABVX]
3848
3923
+
Lys
CTT
[ENA]
¡û
>W141810791
JPWL01000083
Gammaproteobacteria
Aeromonas bestiarum salmonicida [JPWL]
997
922
-
Lys
CTT
[ENA]
¡û
>W141822862
JRBF01000005
Gammaproteobacteria
Aeromonas media [JRBF]
34180
34255
+
Lys
CTT
[ENA]
¡û
>W141822976
JRBG01000024
Gammaproteobacteria
Aeromonas media [JRBG]
28119
28044
-
Lys
CTT
[ENA]
¡û
>W1910634906
LMTT01000029
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida M22710-11 [LMTT]
221190
221265
+
Lys
CTT
[ENA]
¡û
>W1910635557
LNGB01000032
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida m11743-09 [LNGB]
221190
221265
+
Lys
CTT
[ENA]
¡û
>W1911420683
NXBT01000094
Gammaproteobacteria
Aeromonas salmonicida Z5-5 [NXBT]
174
99
-
Lys
CTT
[ENA]
¡û
>W1911420839
NXBV01000037
Gammaproteobacteria
Aeromonas media Z1-6 [NXBV]
11395
11320
-
Lys
CTT
[ENA]
¡û
>W1911630310
PSZI01000008
Gammaproteobacteria
Aeromonas salmonicida AJ83 [PSZI]
52883
52808
-
Lys
CTT
[ENA]
¡û
>W1911630448
PSZJ01000022
Gammaproteobacteria
Aeromonas salmonicida A308 [PSZJ]
458
383
-
Lys
CTT
[ENA]
¡û
>W1911630529
PSZK01000006
Gammaproteobacteria
Aeromonas salmonicida 947C [PSZK]
226797
226872
+
Lys
CTT
[ENA]
¡û
>W1810242347
PPUX01000009
Gammaproteobacteria
Aeromonas bestiarum GA97-22 [PPUX]
111124
111049
-
Lys
CTT
[ENA]
¡û
>W1810338585
PUTQ01000037
Gammaproteobacteria
Aeromonas hydrophila AFG_SD03_1510_Ahy_093 [PUTQ]
48884
48959
+
Lys
CTT
[ENA]
¡û
>W1810693577
QLLM01000003
Gammaproteobacteria
Aeromonas salmonicida 17 [QLLM]
52524
52449
-
Lys
CTT
[ENA]
¡û
>C151028268
CP007567
Gammaproteobacteria
Aeromonas media WS [CP007567]
4563056
4562981
-
Lys
CTT
[Ensembl]
¡û
>W1510065014
CDBL01000004
Gammaproteobacteria
Aeromonas piscicola LMG 24783 [CDBL]
35101
35026
-
Lys
CTT
[ENA]
¡û
>W1510066191
CDBZ01000179
Gammaproteobacteria
Aeromonas media CECT 4232 [CDBZ]
331
256
-
Lys
CTT
[ENA]
¡û
>W1510066255
CDCA01000024
Gammaproteobacteria
Aeromonas tecta CECT 7082 [CDCA]
45229
45304
+
Lys
CTT
[ENA]
¡û
>W1510067412
CDDA01000006
Gammaproteobacteria
Aeromonas bestiarum CECT 4227 [CDDA]
301807
301882
+
Lys
CTT
[ENA]
¡û
>W1510068115
CDDI01000018
Gammaproteobacteria
Aeromonas encheleia CECT 4342 [CDDI]
55404
55479
+
Lys
CTT
[ENA]
¡û
>W1510068792
CDDW01000049
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida CIP 103209 [CDDW]
52763
52688
-
Lys
CTT
[ENA]
¡û
>W1511359769
JRYV01000037
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida 2009-144K3 [JRYV]
394
319
-
Lys
CTT
[ENA]
¡û
>W1511359860
JRYW01000003
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida 2004-05MF26 [JRYW]
221198
221273
+
Lys
CTT
[ENA]
¡û
>W1511511397
JXTA01000002
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida JF3224 [JXTA]
221156
221231
+
Lys
CTT
[ENA]
¡û
>C121012665
CP003415
Gammaproteobacteria
Pectobacterium parmentieri SCC3193 [CP003415]
1598858
1598933
+
Lys
CTT
-
¡û
>W121021171
AGVO01000028
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida 01-B526 [AGVO]
91
16
-
Lys
CTT
[ENA]
¡û
>W121011324
AGJY01000145
Gammaproteobacteria
Yersinia pestis biovar Orientalis str. AS200902147 [AGJY]
26957
26882
-
Lys
CTT
[ENA]
¡û
>W121096260
AKRV01000265
Gammaproteobacteria
Yersinia pestis PY-10 [AKRV]
5109
5184
+
Lys
CTT
[ENA]
¡û
>W121097068
AKSI01000291
Gammaproteobacteria
Yersinia pestis PY-42 [AKSI]
5127
5202
+
Lys
CTT
[ENA]
¡û
>W121097252
AKSL01000296
Gammaproteobacteria
Yersinia pestis PY-47 [AKSL]
5135
5210
+
Lys
CTT
[ENA]
¡û
>W121097314
AKSM01000321
Gammaproteobacteria
Yersinia pestis PY-48 [AKSM]
5095
5170
+
Lys
CTT
[ENA]
¡û
>W121097492
AKSP01000626
Gammaproteobacteria
Yersinia pestis PY-54 [AKSP]
3153
3228
+
Lys
CTT
[ENA]
¡û
>W121097674
AKSS01000397
Gammaproteobacteria
Yersinia pestis PY-58 [AKSS]
5095
5170
+
Lys
CTT
[ENA]
¡û
>W121097978
AKSX01000509
Gammaproteobacteria
Yersinia pestis PY-64 [AKSX]
2215
2290
+
Lys
CTT
[ENA]
¡û
>W121098204
AKTB01000019
Gammaproteobacteria
Yersinia pestis PY-72 [AKTB]
5055
5130
+
Lys
CTT
[ENA]
¡û
>W121098403
AKTE01000389
Gammaproteobacteria
Yersinia pestis PY-89 [AKTE]
5070
5145
+
Lys
CTT
[ENA]
¡û
>W121098650
AKTI01000247
Gammaproteobacteria
Yersinia pestis PY-93 [AKTI]
5088
5163
+
Lys
CTT
[ENA]
¡û
>C131008709
CP003873
Gammaproteobacteria
Alteromonas macleodii str. 'Balearic Sea AD45' [CP003873]
1479312
1479387
+
Lys
TTT
[Ensembl]
¡û
>C131008710
CP003873
Gammaproteobacteria
Alteromonas macleodii str. 'Balearic Sea AD45' [CP003873]
1479412
1479487
+
Lys
TTT
[Ensembl]
¡û
>C131008711
CP003873
Gammaproteobacteria
Alteromonas macleodii str. 'Balearic Sea AD45' [CP003873]
1479526
1479601
+
Lys
TTT
[Ensembl]
¡û
>C131014313
CP004851
Gammaproteobacteria
Alteromonas mediterranea U7 [CP004851]
1496066
1496141
+
Lys
TTT
[Ensembl]
¡û
>C131014314
CP004851
Gammaproteobacteria
Alteromonas mediterranea U7 [CP004851]
1496166
1496241
+
Lys
TTT
[Ensembl]
¡û
>W1610551006
JYFF01000003
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [JYFF]
221164
221239
+
Lys
CTT
[ENA]
¡û
>W1610551107
JYFG01000003
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [JYFG]
221184
221259
+
Lys
CTT
[ENA]
¡û
>W1610574822
JZTF01000016
Gammaproteobacteria
Aeromonas salmonicida [JZTF]
41633
41558
-
Lys
CTT
[ENA]
¡û
>W1610574940
JZTG01000009
Gammaproteobacteria
Aeromonas salmonicida [JZTG]
191660
191735
+
Lys
CTT
[ENA]
¡û
>W1610575037
JZTH01000021
Gammaproteobacteria
Aeromonas salmonicida [JZTH]
19946
20021
+
Lys
CTT
[ENA]
¡û
>W1610575107
JZTI01000003
Gammaproteobacteria
Aeromonas salmonicida subsp. smithia [JZTI]
53394
53319
-
Lys
CTT
[ENA]
¡û
>W1610910814
LSGV01000026
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [LSGV]
199
124
-
Lys
CTT
[ENA]
¡û
>W1610910910
LSGW01000049
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [LSGW]
242
167
-
Lys
CTT
[ENA]
¡û
>W1610910994
LSGX01000060
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [LSGX]
220823
220898
+
Lys
CTT
[ENA]
¡û
>W1610911078
LSGY01000101
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [LSGY]
52763
52688
-
Lys
CTT
[ENA]
¡û
>W1611024053
LYXO01000039
Gammaproteobacteria
Aeromonas piscicola [LYXO]
147
72
-
Lys
CTT
[ENA]
¡û
>W1710661279
JYFF01000003
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [JYFF]
221164
221239
+
Lys
CTT
[ENA]
¡û
>W1710661380
JYFG01000003
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [JYFG]
221184
221259
+
Lys
CTT
[ENA]
¡û
>W1710692057
JZTF01000016
Gammaproteobacteria
Aeromonas salmonicida [JZTF]
41633
41558
-
Lys
CTT
[ENA]
¡û
>W1710692175
JZTG01000009
Gammaproteobacteria
Aeromonas salmonicida [JZTG]
191660
191735
+
Lys
CTT
[ENA]
¡û
>W1710692272
JZTH01000021
Gammaproteobacteria
Aeromonas salmonicida [JZTH]
19946
20021
+
Lys
CTT
[ENA]
¡û
>W1710692342
JZTI01000003
Gammaproteobacteria
Aeromonas salmonicida subsp. smithia [JZTI]
53394
53319
-
Lys
CTT
[ENA]
¡û
>W1710694429
LAIS01000291
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [LAIS]
15426
15501
+
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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