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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.239253 (72 seq.)
>W1710934455
LOJI01000001
Betaproteobacteria
Polynucleobacter yangtzensis [LOJI]
318726
318651
-
Arg
CCG
[ENA]
¡û
>W1710934492
LOJJ01000001
Betaproteobacteria
Polynucleobacter sinensis [LOJJ]
230474
230399
-
Arg
CCG
[ENA]
¡û
>W1711147361
LVJO01000001
Betaproteobacteria
Polynucleobacter asymbioticus [LVJO]
32385
32310
-
Arg
CCG
[ENA]
¡û
>W1711149048
LVLD01000001
Betaproteobacteria
Polynucleobacter asymbioticus P1-KOL8 [LVLD]
32385
32310
-
Arg
CCG
[ENA]
¡û
>W1711149085
LVLE01000001
Betaproteobacteria
Polynucleobacter asymbioticus [LVLE]
32385
32310
-
Arg
CCG
[ENA]
¡û
>W1711149123
LVLF01000001
Betaproteobacteria
Polynucleobacter asymbioticus [LVLF]
62373
62298
-
Arg
CCG
[ENA]
¡û
>W1711149180
LVLG01000001
Betaproteobacteria
Polynucleobacter asymbioticus [LVLG]
32385
32310
-
Arg
CCG
[ENA]
¡û
>W1711272416
LZFI01000001
Betaproteobacteria
Polynucleobacter sp. MWH-Adler-W8 [LZFI]
71215
71140
-
Arg
CCG
[ENA]
¡û
>W1711282002
LZMQ01000004
Betaproteobacteria
Polynucleobacter sp. QLW-P1DATA-2 [LZMQ]
30450
30525
+
Arg
CCG
[ENA]
¡û
>W1711282029
LZMR01000002
Betaproteobacteria
Polynucleobacter sp. MWH-Tro8-2-5-gr [LZMR]
15858
15783
-
Arg
CCG
[ENA]
¡û
>W1711301910
MAIK01000340
Betaproteobacteria
Polynucleobacter necessarius [MAIK]
860
785
-
Arg
CCG
[ENA]
¡û
>W1711387430
MEGQ01000012
Betaproteobacteria
Thiomonas sp. SCN 64-16 [MEGQ]
553
478
-
Arg
CCG
[ENA]
¡û
>W1711421609
MHZG01000012
Betaproteobacteria
Polynucleobacter sp. GWA2_45_21 [MHZG]
5047
5122
+
Arg
CCG
[ENA]
¡û
>W1711625797
MPIY01000017
Betaproteobacteria
Polynucleobacter sphagniphilus MWH-Weng1-1 [MPIY]
194672
194597
-
Arg
CCG
[ENA]
¡û
>W1711932794
NAIA01000001
Betaproteobacteria
Polynucleobacter hirudinilacicola MWH-EgelM1-30-B4 [NAIA]
394073
393998
-
Arg
CCG
[ENA]
¡û
>W1712077062
NGUP01000003
Betaproteobacteria
Polynucleobacter campilacus MWH-Feld-100 [NGUP]
620097
620022
-
Arg
CCG
[ENA]
¡û
>C171035135
CP015016
Betaproteobacteria
Polynucleobacter asymbioticus MWH-RechtKolB [CP015016]
71851
71776
-
Arg
CCG
-
¡û
>C171035173
CP015017
Betaproteobacteria
Polynucleobacter asymbioticus MWH-RechtKol4 [CP015017]
71851
71776
-
Arg
CCG
-
¡û
>C171035211
CP015018
Betaproteobacteria
Polynucleobacter asymbioticus Tro8F10W22 [CP015018]
32385
32310
-
Arg
CCG
-
¡û
>W131220806
ATZV01000038
Betaproteobacteria
beta proteobacterium SCGC AAA027-C02 [ATZV]
6103
6028
-
Arg
CCG
[ENA]
¡û
>C017402
CP000655
Betaproteobacteria
Polynucleobacter asymbioticus QLW-P1DMWA-1 [CP000655]
32385
32310
-
Arg
CCG
[Ensembl]
¡û
>WENV180111411
OAPN01075547
[OAPN] marine metagenome; 2011
271
196
-
Arg
CCG
[ENA]
¢þ
>WENV180391141
OBPM01018539
[OBPM] marine metagenome; ENVO:00002010
386
311
-
Arg
CCG
[ENA]
¢þ
>WENV181367528
OFQB01007162
[OFQB] freshwater metagenome; Freshwater Lake
203
128
-
Arg
CCG
[ENA]
¢þ
>WENV181367718
OFQC01004171
[OFQC] freshwater metagenome; Freshwater Lake
61
136
+
Arg
CCG
[ENA]
¢þ
>WENV181368159
OFQK01000536
[OFQK] freshwater metagenome; Freshwater Lake
84
159
+
Arg
CCG
[ENA]
¢þ
>WENV181368301
OFQL01000295
[OFQL] freshwater metagenome; Freshwater Lake
1821
1746
-
Arg
CCG
[ENA]
¢þ
>WENV181368808
OFQN01000783
[OFQN] freshwater metagenome; Freshwater Lake
3896
3971
+
Arg
CCG
[ENA]
¢þ
>WENV181369318
OFQP01000260
[OFQP] freshwater metagenome; Freshwater Lake
4233
4158
-
Arg
CCG
[ENA]
¢þ
>WENV181369797
OFQR01000152
[OFQR] freshwater metagenome; Freshwater Lake
542
617
+
Arg
CCG
[ENA]
¢þ
>WENV181370139
OFQS01000077
[OFQS] freshwater metagenome; Freshwater Lake
4447
4522
+
Arg
CCG
[ENA]
¢þ
>WENV181370571
OFQT01000332
[OFQT] freshwater metagenome; Freshwater Lake
1966
2041
+
Arg
CCG
[ENA]
¢þ
>WENV181395670
OFSB01000236
[OFSB] freshwater metagenome; Freshwater Lake
194
269
+
Arg
CCG
[ENA]
¢þ
>WENV181844256
OGVV01030791
[OGVV] freshwater metagenome; freshwater
275
200
-
Arg
CCG
[ENA]
¢þ
>WENV181855853
OGWM01003467
[OGWM] freshwater metagenome; freshwater
42
117
+
Arg
CCG
[ENA]
¢þ
>C08007639
CP001010
Betaproteobacteria
Polynucleobacter necessarius [CP001010]
29498
29426
-
Arg
CCG
[Ensembl]
¡û
>WENV170600405
FUWD010123546
[FUWD] metagenome; unknown
99
174
+
Arg
CCG
[ENA]
¢þ
>WENV170604211
FUWD010373938
[FUWD] metagenome; unknown
204
279
+
Arg
CCG
[ENA]
¢þ
>WENV170616668
FUWD012896418
[FUWD] metagenome; unknown
159
84
-
Arg
CCG
[ENA]
¢þ
>WENV170624525
FUWD013182677
[FUWD] metagenome; unknown
5229
5154
-
Arg
CCG
[ENA]
¢þ
>WENV170632811
FUWD013387393
[FUWD] metagenome; unknown
5229
5154
-
Arg
CCG
[ENA]
¢þ
>C181078400
CP023276
Betaproteobacteria
Polynucleobacter difficilis AM-8B5 [CP023276]
24008
23933
-
Arg
CCG
-
¡û
>C181187706
CP030086
Betaproteobacteria
Polynucleobacter paneuropaeus MWH-Creno-4B4 [CP030086]
28586
28511
-
Arg
CCG
-
¡û
>C181195899
CP031124
Betaproteobacteria
Ephemeroptericola cinctiostellae F02 [CP031124]
900993
901068
+
Arg
CCG
-
¡û
>C181218888
LT606946
Betaproteobacteria
Polynucleobacter necessarius [LT606946]
1827359
1827284
-
Arg
CCG
-
¡û
>C181218922
LT606947
Betaproteobacteria
Polynucleobacter necessarius [LT606947]
1581148
1581073
-
Arg
CCG
-
¡û
>C181218953
LT606949
Betaproteobacteria
Polynucleobacter necessarius [LT606949]
1675575
1675500
-
Arg
CCG
-
¡û
>C181218992
LT606950
Betaproteobacteria
Polynucleobacter necessarius [LT606950]
1522709
1522634
-
Arg
CCG
-
¡û
>C181219006
LT606951
Betaproteobacteria
Polynucleobacter necessarius [LT606951]
9619
9694
+
Arg
CCG
-
¡û
>C181219073
LT615227
Betaproteobacteria
Polynucleobacter necessarius [LT615227]
674266
674191
-
Arg
CCG
-
¡û
>W09106291
AAUC01000007
Betaproteobacteria
Polynucleobacter asymbioticus QLW-P1DMWA-1 [AAUC]
5897
5972
+
Arg
CCG
[ENA]
¡û
>W09107491
ABJA01000001
Betaproteobacteria
Polynucleobacter necessarius STIR1 [ABJA]
3579
3654
+
Arg
CCG
[ENA]
¡û
>W141807142
JPOE01000005
Betaproteobacteria
Thiomonas sp. FB-Cd [JPOE]
282591
282516
-
Arg
CCG
[ENA]
¡û
>C141003813
CP004348
Betaproteobacteria
beta proteobacterium CB [CP004348]
28725
28650
-
Arg
CCG
[Ensembl]
¡û
>W1911279046
NTGB01000001
Betaproteobacteria
Polynucleobacter rarus MT-CBb6A5 [NTGB]
2594382
2594457
+
Arg
CCG
[ENA]
¡û
>W1911490751
OANS01000003
Betaproteobacteria
Polynucleobacter meluiroseus AP-Melu-1000-B4 [OANS]
84072
83997
-
Arg
CCG
[ENA]
¡û
>WENV027198
AACY021026437
Marine microbial communities from Global Ocean Sampling (GOS)
680
755
+
Arg
CCG
[ENA]
>W1810101999
PGTX01000002
Betaproteobacteria
Polynucleobacter brandtiae UB-Domo-W1 [PGTX]
345920
345995
+
Arg
CCG
[ENA]
¡û
>W1810273267
PSNX01000005
Betaproteobacteria
Caldimonas caldifontis BCRC 80649 [PSNX]
39181
39106
-
Arg
CCG
[ENA]
¡û
>W1810273296
PSNY01000003
Betaproteobacteria
Caldimonas thermodepolymerans DSM 15344 [PSNY]
164757
164832
+
Arg
CCG
[ENA]
¡û
>W1810699163
QMCG01000001
Betaproteobacteria
Polynucleobacter paneuropaeus MWH-UK1W16 [QMCG]
403210
403135
-
Arg
CCG
[ENA]
¡û
>W1810699180
QMCH01000001
Betaproteobacteria
Polynucleobacter paneuropaeus FUKU-NW-11 [QMCH]
265247
265172
-
Arg
CCG
[ENA]
¡û
>W1810762755
QQAP01000005
Betaproteobacteria
Caldimonas thermodepolymerans DSM 15344 [QQAP]
123767
123692
-
Arg
CCG
[ENA]
¡û
>C151003091
AP014683
Betaproteobacteria
Burkholderiales bacterium GJ-E10 [AP014683]
2952693
2952618
-
Arg
CCG
[Ensembl]
¡û
>C151025668
CP007501
Betaproteobacteria
Polynucleobacter duraquae MWH-MoK4 [CP007501]
28033
27958
-
Arg
CCG
[Ensembl]
¡û
>C161092402
CP015922
Betaproteobacteria
Polynucleobacter wuianus QLW-P1FAT50C-4 [CP015922]
29373
29298
-
Arg
CCG
[Ensembl]
¡û
>WENV058183
AACY023320348
Marine microbial communities from Global Ocean Sampling (GOS)
1410
1485
+
Arg
CCG
[ENA]
>WENV058958
AACY023348675
Marine microbial communities from Global Ocean Sampling (GOS)
1227
1302
+
Arg
CCG
[ENA]
>W1610791986
LOJI01000001
Betaproteobacteria
Polynucleobacter yangtzensis [LOJI]
318726
318651
-
Arg
CCG
[ENA]
¡û
>W1610792023
LOJJ01000001
Betaproteobacteria
Polynucleobacter sinensis [LOJJ]
230474
230399
-
Arg
CCG
[ENA]
¡û
>W1611052750
MAIK01000340
Betaproteobacteria
Polynucleobacter necessarius [MAIK]
860
785
-
Arg
CCG
[ENA]
¡û
>W1710605901
FWXJ01000015
Betaproteobacteria
Polynucleobacter kasalickyi VK13 [FWXJ]
60537
60462
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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