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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.239314 (79 seq.)
>W1710784800
LJHG01000185
Bacillota
Epulopiscium sp. SCG-B10WGA-EpuloB [LJHG]
846
772
-
Ala
TGC
[ENA]
¡û
>W1711293490
LZYT01000005
Bacillota
Clostridium felsineum DSM 794 [LZYT]
277083
277158
+
Ala
TGC
[ENA]
¡û
>W1711293545
LZYT01000052
Bacillota
Clostridium felsineum DSM 794 [LZYT]
389
464
+
Ala
TGC
[ENA]
¡û
>W1711293584
LZYV01000041
Firmicutes
Clostridium roseum (LZYV) roseum [LZYV]
55328
55403
+
Ala
TGC
[ENA]
¡û
>W1711293630
LZYV01000099
Firmicutes
Clostridium roseum (LZYV) roseum [LZYV]
392
467
+
Ala
TGC
[ENA]
¡û
>W1711293660
LZYW01000043
Firmicutes
Clostridium aurantibutyricum (LZYW) aurantibutyricum [LZYW]
57316
57391
+
Ala
TGC
[ENA]
¡û
>W1711293683
LZYW01000084
Firmicutes
Clostridium aurantibutyricum (LZYW) aurantibutyricum [LZYW]
142
217
+
Ala
TGC
[ENA]
¡û
>W1711293710
LZYW01000140
Firmicutes
Clostridium aurantibutyricum (LZYW) aurantibutyricum [LZYW]
338
413
+
Ala
TGC
[ENA]
¡û
>W1711293770
LZYX01000004
Bacillota
Clostridium acetobutylicum [LZYX]
87128
87203
+
Ala
TGC
[ENA]
¡û
>W1711293791
LZYX01000013
Bacillota
Clostridium acetobutylicum [LZYX]
205
280
+
Ala
TGC
[ENA]
¡û
>W1711293798
LZYX01000017
Bacillota
Clostridium acetobutylicum [LZYX]
142
217
+
Ala
TGC
[ENA]
¡û
>W1711293827
LZYY01000010
Bacillota
Clostridium acetobutylicum [LZYY]
135
210
+
Ala
TGC
[ENA]
¡û
>W1711293847
LZYY01000016
Bacillota
Clostridium acetobutylicum [LZYY]
566
491
-
Ala
TGC
[ENA]
¡û
>W1711342252
MCGV01000001
Bacillota
Clostridium pasteurianum [MCGV]
2784214
2784289
+
Ala
TGC
[ENA]
¡û
>W1711342292
MCGV01000001
Bacillota
Clostridium pasteurianum [MCGV]
2250874
2250799
-
Ala
TGC
[ENA]
¡û
>W1711342300
MCGV01000001
Bacillota
Clostridium pasteurianum [MCGV]
2005873
2005798
-
Ala
TGC
[ENA]
¡û
>C004960
AE001437
Bacillota
Clostridium acetobutylicum ATCC 824 [AE001437]
14575
14650
+
Ala
TGC
[Ensembl]
¡û
>C004994
AE001437
Bacillota
Clostridium acetobutylicum ATCC 824 [AE001437]
3338036
3337961
-
Ala
TGC
[Ensembl]
¡û
>WENV180769234
ODIG01046875
[ODIG] human metagenome; G_DNA_Tongue dorsum
908
833
-
Ala
TGC
[ENA]
¢þ
>WENV180772873
ODIH01345689
[ODIH] human metagenome; G_DNA_Stool
6
81
+
Ala
TGC
[ENA]
¢þ
>WENV180776384
ODIK01037148
[ODIK] human metagenome; G_DNA_Tongue dorsum
799
724
-
Ala
TGC
[ENA]
¢þ
>WENV180806380
ODJH01015695
[ODJH] human metagenome; G_DNA_Tongue dorsum
24
99
+
Ala
TGC
[ENA]
¢þ
>WENV180821597
ODJS01023097
[ODJS] human metagenome; G_DNA_Tongue dorsum
348
273
-
Ala
TGC
[ENA]
¢þ
>WENV180853046
ODKW01022482
[ODKW] human metagenome; G_DNA_Tongue dorsum
1159
1084
-
Ala
TGC
[ENA]
¢þ
>WENV180858630
ODLC01017188
[ODLC] human metagenome; G_DNA_Tongue dorsum
1165
1090
-
Ala
TGC
[ENA]
¢þ
>WENV180960447
ODUM01035022
[ODUM] human metagenome; G_DNA_Tongue dorsum
2
77
+
Ala
TGC
[ENA]
¢þ
>WENV180966264
ODUP01147908
[ODUP] human metagenome; G_DNA_Stool
259
184
-
Ala
TGC
[ENA]
¢þ
>WENV181044972
ODXV01080685
[ODXV] human metagenome; G_DNA_Tongue dorsum
15
90
+
Ala
TGC
[ENA]
¢þ
>WENV181075415
OEAO01170408
[OEAO] human metagenome; G_DNA_Tongue dorsum
139
64
-
Ala
TGC
[ENA]
¢þ
>WENV181394304
OFRY01045052
[OFRY] human gut metagenome; human gut
511
436
-
Ala
TGC
[ENA]
¢þ
>WENV181398426
OFSD01084848
[OFSD] human gut metagenome; human gut
83
158
+
Ala
TGC
[ENA]
¢þ
>WENV181427355
OGCQ01068882
[OGCQ] human gut metagenome; human gut
83
158
+
Ala
TGC
[ENA]
¢þ
>WENV181882472
OGXH01065712
[OGXH] human gut metagenome; faeces
510
435
-
Ala
TGC
[ENA]
¢þ
>WENV181884235
OGXI01071997
[OGXI] human gut metagenome; faeces
83
158
+
Ala
TGC
[ENA]
¢þ
>WENV181897215
OGXS01061271
[OGXS] human gut metagenome; faeces
25
100
+
Ala
TGC
[ENA]
¢þ
>WENV181905160
OGXX01106998
[OGXX] human gut metagenome; faeces
510
435
-
Ala
TGC
[ENA]
¢þ
>WENV181950012
OGZF01049993
[OGZF] human gut metagenome; faeces
82
157
+
Ala
TGC
[ENA]
¢þ
>WENV181953495
OGZI01009458
[OGZI] human gut metagenome; faeces
505
580
+
Ala
TGC
[ENA]
¢þ
>WENV181977301
OHAD01045136
[OHAD] human gut metagenome; faeces
766
691
-
Ala
TGC
[ENA]
¢þ
>WENV181994447
OHAS01044766
[OHAS] human gut metagenome; faeces
510
435
-
Ala
TGC
[ENA]
¢þ
>WENV182006096
OHBE01073267
[OHBE] human gut metagenome; faeces
460
385
-
Ala
TGC
[ENA]
¢þ
>WENV182009705
OHBJ01035253
[OHBJ] human gut metagenome; faeces
510
435
-
Ala
TGC
[ENA]
¢þ
>WENV182540081
OIXV01067846
[OIXV] human gut metagenome; faeces
651
576
-
Ala
TGC
[ENA]
¢þ
>WENV182684259
OJNX01067803
[OJNX] human gut metagenome; human gut
82
157
+
Ala
TGC
[ENA]
¢þ
>WENV182700558
OJOO01078282
[OJOO] human gut metagenome; human gut
29
104
+
Ala
TGC
[ENA]
¢þ
>WENV182888159
OKSD01082177
[OKSD] human gut metagenome; faeces
488
413
-
Ala
TGC
[ENA]
¢þ
>WENV183049995
OLGH01066470
[OLGH] human gut metagenome; faeces
70
145
+
Ala
TGC
[ENA]
¢þ
>WENV183100302
OLNF01097003
[OLNF] human gut metagenome; faeces
83
158
+
Ala
TGC
[ENA]
¢þ
>WENV183140047
OLOI01005562
[OLOI] human gut metagenome; faeces
3844
3770
-
Ala
TGC
[ENA]
¢þ
>WENV183201709
OLPW01099886
[OLPW] human gut metagenome; faeces
510
435
-
Ala
TGC
[ENA]
¢þ
>WENV183273786
OLRX01055796
[OLRX] human gut metagenome; faeces
83
158
+
Ala
TGC
[ENA]
¢þ
>WENV183290102
OLSG01074032
[OLSG] human gut metagenome; faeces
510
435
-
Ala
TGC
[ENA]
¢þ
>WENV183315322
OLVR01071411
[OLVR] human gut metagenome; faeces
83
158
+
Ala
TGC
[ENA]
¢þ
>WENV183321590
OLVW01062378
[OLVW] human gut metagenome; faeces
83
158
+
Ala
TGC
[ENA]
¢þ
>WENV183326749
OLVZ01047034
[OLVZ] human gut metagenome; faeces
510
435
-
Ala
TGC
[ENA]
¢þ
>WENV183331312
OLWB01099651
[OLWB] human gut metagenome; faeces
83
158
+
Ala
TGC
[ENA]
¢þ
>WENV183507865
OMGY01091320
[OMGY] human gut metagenome; human gut
59
134
+
Ala
TGC
[ENA]
¢þ
>WENV183754053
PPYE01081703
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
520
595
+
Ala
TGC
[ENA]
¢þ
>WENV170784828
MDSO01000455
[MDSO] gut metagenome; Stomach gut content
4071
3997
-
Ala
TGC
[ENA]
¢þ
>WENV170784917
MDSO01067756
[MDSO] gut metagenome; Stomach gut content
322
248
-
Ala
TGC
[ENA]
¢þ
>C191138147
CP035281
Bacillota
Aminipila luticellarii JN-18 [CP035281]
753642
753717
+
Ala
TGC
-
¡û
>C191138151
CP035281
Bacillota
Aminipila luticellarii JN-18 [CP035281]
980295
980370
+
Ala
TGC
-
¡û
>C191138162
CP035281
Bacillota
Aminipila luticellarii JN-18 [CP035281]
1928031
1927956
-
Ala
TGC
-
¡û
>W1910888192
NERJ01000008
Bacillota
Clostridium acetobutylicum JB200 [NERJ]
87050
87125
+
Ala
TGC
[ENA]
¡û
>W1810085575
PETE01000002
Bacillota
Clostridium sp. CT7 [PETE]
2784214
2784289
+
Ala
TGC
[ENA]
¡û
>W1810085615
PETE01000002
Bacillota
Clostridium sp. CT7 [PETE]
2250874
2250799
-
Ala
TGC
[ENA]
¡û
>W1810085623
PETE01000002
Bacillota
Clostridium sp. CT7 [PETE]
2005873
2005798
-
Ala
TGC
[ENA]
¡û
>W1810147555
PIQQ01000022
Bacillota
Clostridium acetobutylicum WA [PIQQ]
1572
1647
+
Ala
TGC
[ENA]
¡û
>W1810394210
PYBN01000003
Bacillota
Clostridium sp. NJ4 [PYBN]
609539
609614
+
Ala
TGC
[ENA]
¡û
>W1810394215
PYBN01000004
Bacillota
Clostridium sp. NJ4 [PYBN]
773031
772956
-
Ala
TGC
[ENA]
¡û
>W1810394222
PYBN01000004
Bacillota
Clostridium sp. NJ4 [PYBN]
627676
627601
-
Ala
TGC
[ENA]
¡û
>W1810394224
PYBN01000004
Bacillota
Clostridium sp. NJ4 [PYBN]
627335
627260
-
Ala
TGC
[ENA]
¡û
>C11104554
CP002660
Bacillota
Clostridium acetobutylicum DSM 1731 [CP002660]
14575
14650
+
Ala
TGC
[Ensembl]
¡û
>C11104588
CP002660
Bacillota
Clostridium acetobutylicum DSM 1731 [CP002660]
3339662
3339587
-
Ala
TGC
[Ensembl]
¡û
>C11104627
CP002118
Bacillota
Clostridium acetobutylicum EA 2018 [CP002118]
14575
14650
+
Ala
TGC
[Ensembl]
¡û
>C11104663
CP002118
Bacillota
Clostridium acetobutylicum EA 2018 [CP002118]
3337292
3337217
-
Ala
TGC
[Ensembl]
¡û
>W1511357558
JRWL01000011
Bacillota
Clostridium acetobutylicum GXAS18-1 [JRWL]
87509
87584
+
Ala
TGC
[ENA]
¡û
>W1511707430
LGVB01000015
Bacillota
Clostridium sp. DMHC 10 [LGVB]
2943051
2943126
+
Ala
TGC
[ENA]
¡û
>W1511707449
LGVB01000016
Bacillota
Clostridium sp. DMHC 10 [LGVB]
366352
366427
+
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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