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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.239407 (12 seq.)
>W1711395477
METS01000001
Unclassified
candidate division WOR-1 bacterium RIFOXYA12_FULL_43_27 [METS]
146302
146376
+
Gly
TCC
[ENA]
¡û
>W1711395544
METT01000001
Unclassified
candidate division WOR-1 bacterium RIFOXYA12_FULL_52_29 [METT]
1543807
1543735
-
Gly
TCC
[ENA]
¡û
>W1711395640
METV01000113
Unclassified
candidate division WOR-1 bacterium RIFOXYA2_FULL_37_7 [METV]
3159
3087
-
Gly
TCC
[ENA]
¡û
>W1711395720
METX01000003
Unclassified
candidate division WOR-1 bacterium RIFOXYA2_FULL_46_56 [METX]
385115
385041
-
Gly
TCC
[ENA]
¡û
>W1711395759
METY01000001
Unclassified
candidate division WOR-1 bacterium RIFOXYA2_FULL_51_19 [METY]
1543807
1543735
-
Gly
TCC
[ENA]
¡û
>W1711395783
METZ01000001
Unclassified
candidate division WOR-1 bacterium RIFOXYB12_FULL_52_16 [METZ]
68991
69063
+
Gly
TCC
[ENA]
¡û
>W1711395903
MEUB01000032
Unclassified
candidate division WOR-1 bacterium RIFOXYB2_FULL_37_13 [MEUB]
3847
3775
-
Gly
TCC
[ENA]
¡û
>W1711395983
MEUD01000001
Unclassified
candidate division WOR-1 bacterium RIFOXYB2_FULL_45_9 [MEUD]
1543807
1543735
-
Gly
TCC
[ENA]
¡û
>W1711396036
MEUE01000003
Unclassified
candidate division WOR-1 bacterium RIFOXYB2_FULL_46_45 [MEUE]
385221
385147
-
Gly
TCC
[ENA]
¡û
>W1711396115
MEUG01000001
Unclassified
candidate division WOR-1 bacterium RIFOXYC12_FULL_54_18 [MEUG]
1543807
1543735
-
Gly
TCC
[ENA]
¡û
>W1711396158
MEUH01000057
Unclassified
candidate division WOR-1 bacterium RIFOXYC2_FULL_37_10 [MEUH]
3821
3749
-
Gly
TCC
[ENA]
¡û
>W1711396231
MEUJ01000002
Unclassified
candidate division WOR-1 bacterium RIFOXYC2_FULL_46_14 [MEUJ]
361160
361086
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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