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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.239431 (7 seq.)
>W1711399672
MFFZ01000049
Unclassified
Candidatus Falkowbacteria bacterium RIFOXYA2_FULL_35_8 [MFFZ]
13753
13678
-
Thr
GGT
[ENA]
¡û
>W1711399852
MFGE01000006
Unclassified
Candidatus Falkowbacteria bacterium RIFOXYB2_FULL_35_7 [MFGE]
4900
4975
+
Thr
GGT
[ENA]
¡û
>W1711400096
MFGJ01000008
Unclassified
Candidatus Falkowbacteria bacterium RIFOXYC2_FULL_36_12 [MFGJ]
65262
65187
-
Thr
GGT
[ENA]
¡û
>W1711400301
MFGP01000033
Unclassified
Candidatus Falkowbacteria bacterium RIFOXYD2_FULL_35_9 [MFGP]
8836
8911
+
Thr
GGT
[ENA]
¡û
>WENV170570964
FLOH01000043
[FLOH] marine metagenome; water
334414
334341
-
Thr
GGT
[ENA]
¢þ
>WENV170572457
FLOH01000887
[FLOH] marine metagenome; water
30534
30459
-
Thr
GGT
[ENA]
¢þ
>WENV170610271
FUWD011803123
[FUWD] metagenome; unknown
95
20
-
Thr
GGT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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