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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.23944 (25 seq.)
>W131053707
ANAH01000049
Myxococcota
Cystobacter fuscus DSM 2262 [ANAH]
152608
152521
-
Ser
CGA
[ENA]
¡û
>W1711625300
MPIN01000031
Myxococcota
Cystobacter ferrugineus [MPIN]
26454
26367
-
Ser
CGA
[ENA]
¡û
>W1711628686
MPOI01000028
Myxococcota
Archangium sp. Cb G35 [MPOI]
22124
22211
+
Ser
CGA
[ENA]
¡û
>w012175
AAMD01000157
Myxococcota
Stigmatella aurantiaca DW4/3-1 [AAMD]
15489
15580
+
Ser
CGA
[ENA]
¡û
>WENV180016104
FSUC01000282
[FSUC] metagenome; soil
5652
5739
+
Ser
CGA
[ENA]
¢þ
>WENV181184974
OEKZ01000440
[OEKZ] metagenome; 1998
2455
2368
-
Ser
CGA
[ENA]
¢þ
>WENV170556907
CXWL01015948
[CXWL] groundwater metagenome; biofilm material
4602
4689
+
Ser
CGA
[ENA]
¢þ
>C181057895
CP022098
Myxococcota
Cystobacter fuscus DSM 52655 [CP022098]
2970129
2970042
-
Ser
CGA
-
¡û
>C181059846
CP022163
Myxococcota
Melittangium boletus DSM 14713 [CP022163]
6261300
6261213
-
Ser
CGA
-
¡û
>C181060667
CP022203
Myxococcota
Corallococcus macrosporus DSM 14697 [CP022203]
2346188
2346101
-
Ser
CGA
-
¡û
>C191128702
CP034669
Myxococcota
Corallococcus coralloides B035 [CP034669]
2215239
2215152
-
Ser
CGA
-
¡û
>W141695209
JMCB01000015
Myxococcota
Hyalangium minutum [JMCB]
5795
5708
-
Ser
CGA
[ENA]
¡û
>W141695269
JMCC01000071
Myxococcota
Enhygromyxa salina [JMCC]
62823
62910
+
Ser
CGA
[ENA]
¡û
>W141806655
JPMI01000150
Myxococcota
Archangium violaceum Cb vi76 [JPMI]
18923
19010
+
Ser
CGA
[ENA]
¡û
>W1911701614
QNUN01000016
Myxococcota
Corallococcus sp. H22C18031201 [QNUN]
216401
216488
+
Ser
CGA
[ENA]
¡û
>W1810452208
PZOX01000014
Myxococcota
Vitiosangium sp. GDMCC 1.1324 [PZOX]
16553
16640
+
Ser
CGA
[ENA]
¡û
>W1810884687
QUMU01000003
Myxococcota
Archangium gephyra DSM 2261 [QUMU]
362282
362195
-
Ser
CGA
[ENA]
¡û
>C151083602
CP011509
Myxococcota
Archangium gephyra DSM 2261 [CP011509]
3920325
3920238
-
Ser
CGA
[Ensembl]
¡û
>C11114356
CP002830
Myxococcota
Corallococcus macrosporus HW-1 [CP002830]
4149196
4149109
-
Ser
CGA
[Ensembl]
¡û
>C11119148
CP002271
Myxococcota
Stigmatella aurantiaca DW4/3-1 [CP002271]
3285854
3285767
-
Ser
CGA
[Ensembl]
¡û
>C121012102
CP003389
Myxococcota
Corallococcus coralloides DSM 2259 [CP003389]
2352065
2351978
-
Ser
CGA
[Ensembl]
¡û
>W1710513724
FNAJ01000009
Myxococcota
Myxococcus virescens [FNAJ]
106860
106773
-
Ser
CGA
[ENA]
¡û
>W1710544106
FOAP01000001
Myxococcota
Stigmatella aurantiaca [FOAP]
580964
580877
-
Ser
CGA
[ENA]
¡û
>W1710554013
FOIB01000011
Myxococcota
Myxococcus fulvus [FOIB]
54868
54781
-
Ser
CGA
[ENA]
¡û
>W1710554372
FOIJ01000027
Myxococcota
Stigmatella erecta [FOIJ]
36166
36079
-
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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