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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.23945 (38 seq.)
>W131086641
AOBT01000021
Myxococcota
Myxococcus xanthus DZF1 [AOBT]
105977
106065
+
Ser
GGA
[ENA]
¡û
>W131053708
ANAH01000049
Myxococcota
Cystobacter fuscus DSM 2262 [ANAH]
152509
152423
-
Ser
GGA
[ENA]
¡û
>W1711625301
MPIN01000031
Myxococcota
Cystobacter ferrugineus [MPIN]
26355
26267
-
Ser
GGA
[ENA]
¡û
>W1711628687
MPOI01000028
Myxococcota
Archangium sp. Cb G35 [MPOI]
22223
22311
+
Ser
GGA
[ENA]
¡û
>C014527
CP000113
Myxococcota
Myxococcus xanthus DK 1622 [CP000113]
2270365
2270279
-
Ser
GGA
[Ensembl]
¡û
>w012176
AAMD01000157
Myxococcota
Stigmatella aurantiaca DW4/3-1 [AAMD]
15589
15680
+
Ser
GGA
[ENA]
¡û
>WENV180016105
FSUC01000282
[FSUC] metagenome; soil
5750
5838
+
Ser
GGA
[ENA]
¢þ
>WENV181184975
OEKZ01000440
[OEKZ] metagenome; 1998
2363
2275
-
Ser
GGA
[ENA]
¢þ
>C181057896
CP022098
Myxococcota
Cystobacter fuscus DSM 52655 [CP022098]
2970030
2969942
-
Ser
GGA
-
¡û
>C181059847
CP022163
Myxococcota
Melittangium boletus DSM 14713 [CP022163]
6261201
6261112
-
Ser
GGA
-
¡û
>C181060668
CP022203
Myxococcota
Corallococcus macrosporus DSM 14697 [CP022203]
2346090
2346002
-
Ser
GGA
-
¡û
>C191013164
CP017169
Myxococcota
Myxococcus xanthus GH3.5.6c2 [CP017169]
2291013
2290925
-
Ser
GGA
-
¡û
>C191013229
CP017170
Myxococcota
Myxococcus xanthus GH5.1.9c20 [CP017170]
2203144
2203056
-
Ser
GGA
-
¡û
>C191013296
CP017171
Myxococcota
Myxococcus xanthus KF3.2.8c11 [CP017171]
2074000
2073912
-
Ser
GGA
-
¡û
>C191013360
CP017172
Myxococcota
Myxococcus xanthus KF4.3.9c1 [CP017172]
2210796
2210708
-
Ser
GGA
-
¡û
>C191013425
CP017173
Myxococcota
Myxococcus xanthus MC3.3.5c16 [CP017173]
2221150
2221062
-
Ser
GGA
-
¡û
>C191013490
CP017174
Myxococcota
Myxococcus xanthus MC3.5.9c15 [CP017174]
2221150
2221062
-
Ser
GGA
-
¡û
>C191128703
CP034669
Myxococcota
Corallococcus coralloides B035 [CP034669]
2215140
2215052
-
Ser
GGA
-
¡û
>W141695210
JMCB01000015
Myxococcota
Hyalangium minutum [JMCB]
5692
5604
-
Ser
GGA
[ENA]
¡û
>W141695270
JMCC01000071
Myxococcota
Enhygromyxa salina [JMCC]
62926
63014
+
Ser
GGA
[ENA]
¡û
>W141806656
JPMI01000150
Myxococcota
Archangium violaceum Cb vi76 [JPMI]
19024
19112
+
Ser
GGA
[ENA]
¡û
>W1911701615
QNUN01000016
Myxococcota
Corallococcus sp. H22C18031201 [QNUN]
216500
216588
+
Ser
GGA
[ENA]
¡û
>W1810452209
PZOX01000014
Myxococcota
Vitiosangium sp. GDMCC 1.1324 [PZOX]
16652
16740
+
Ser
GGA
[ENA]
¡û
>W1810884688
QUMU01000003
Myxococcota
Archangium gephyra DSM 2261 [QUMU]
362183
362095
-
Ser
GGA
[ENA]
¡û
>C151008211
CP006003
Myxococcota
Myxococcus fulvus 124B02 [CP006003]
2949349
2949261
-
Ser
GGA
[Ensembl]
¡û
>C151083603
CP011509
Myxococcota
Archangium gephyra DSM 2261 [CP011509]
3920226
3920138
-
Ser
GGA
[Ensembl]
¡û
>C151091015
CP012109
Myxococcota
Myxococcus hansupus mixupus [CP012109]
6284661
6284749
+
Ser
GGA
[Ensembl]
¡û
>C11114357
CP002830
Myxococcota
Corallococcus macrosporus HW-1 [CP002830]
4149098
4149010
-
Ser
GGA
[Ensembl]
¡û
>C11119149
CP002271
Myxococcota
Stigmatella aurantiaca DW4/3-1 [CP002271]
3285755
3285667
-
Ser
GGA
[Ensembl]
¡û
>C121012103
CP003389
Myxococcota
Corallococcus coralloides DSM 2259 [CP003389]
2351966
2351878
-
Ser
GGA
[Ensembl]
¡û
>W121102873
AKXT01000022
Myxococcota
Myxococcus hansupus DSM 436 [AKXT]
42721
42633
-
Ser
GGA
[ENA]
¡û
>W121103095
AKYI01000049
Myxococcota
Myxococcus xanthus DZ2 [AKYI]
6773
6861
+
Ser
GGA
[ENA]
¡û
>C131011700
CP004025
Myxococcota
Myxococcus stipitatus DSM 14675 [CP004025]
2821728
2821640
-
Ser
GGA
[Ensembl]
¡û
>W1710513725
FNAJ01000009
Myxococcota
Myxococcus virescens [FNAJ]
106762
106674
-
Ser
GGA
[ENA]
¡û
>W1710529822
FNOH01000016
Myxococcota
Myxococcus xanthus [FNOH]
163560
163648
+
Ser
GGA
[ENA]
¡û
>W1710544107
FOAP01000001
Myxococcota
Stigmatella aurantiaca [FOAP]
580865
580777
-
Ser
GGA
[ENA]
¡û
>W1710554014
FOIB01000011
Myxococcota
Myxococcus fulvus [FOIB]
54769
54681
-
Ser
GGA
[ENA]
¡û
>W1710554373
FOIJ01000027
Myxococcota
Stigmatella erecta [FOIJ]
36067
35979
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK