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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.23969 (31 seq.)
>W131224683
AUCZ01000007
Bacteroidota
Flavobacterium suncheonense DSM 17707 [AUCZ]
121614
121525
-
Ser
GGA
[ENA]
¡û
>W1711713284
MTCY01000008
Bacteroidota
Flavobacterium oreochromis columnare [MTCY]
25725
25636
-
Ser
GGA
[ENA]
¡û
>W1711713363
MTCZ01000113
Bacteroidota
Flavobacterium davisii columnare [MTCZ]
710
621
-
Ser
GGA
[ENA]
¡û
>W1711713388
MTDA01000003
Bacteroidota
Flavobacterium covae columnare [MTDA]
96477
96566
+
Ser
GGA
[ENA]
¡û
>W1711713454
MTDC01000020
Bacteroidota
Flavobacterium covae columnare [MTDC]
20645
20734
+
Ser
GGA
[ENA]
¡û
>W1711713494
MTDD01000005
Bacteroidota
Flavobacterium oreochromis columnare [MTDD]
25288
25199
-
Ser
GGA
[ENA]
¡û
>W1711737995
MUAW01000002
Bacteroidota
Flavobacterium columnare [MUAW]
202408
202497
+
Ser
GGA
[ENA]
¡û
>C171086277
CP018912
Bacteroidota
Flavobacterium columnare TC 1691 [CP018912]
1902743
1902654
-
Ser
GGA
-
¡û
>WENV181837054
OGVK01001369
[OGVK] freshwater metagenome; freshwater
2006
2093
+
Ser
GGA
[ENA]
¢þ
>ENV08002208
ABON01028018
freshwater metagenome; microbial fraction from tilapia pond at Kent SeaTech (Salton Sea, CA)
18
105
+
Ser
GGA
[ENA]
¡û
>C191008572
CP010992
Bacteroidota
Flavobacterium columnare B185 [CP010992]
1630438
1630525
+
Ser
GGA
-
¡û
>W1910578020
JUIX01000027
Bacteroidota
Flavobacterium dauae TCH3-2 [JUIX]
23395
23308
-
Ser
GGA
[ENA]
¡û
>W1910804160
MTCX01000032
Bacteroidota
Flavobacterium columnare 1201 [MTCX]
5040
5127
+
Ser
GGA
[ENA]
¡û
>W1910804207
MTDB01000004
Bacteroidota
Flavobacterium columnare 1372 [MTDB]
96372
96459
+
Ser
GGA
[ENA]
¡û
>W1910809015
MUGU01000101
Bacteroidota
Flavobacterium columnare NBRC 100251 = ATCC 23463 [MUGU]
939
852
-
Ser
GGA
[ENA]
¡û
>W1911139438
NOXX01000168
Bacteroidota
Flavobacterium aurantiibacter TH167 [NOXX]
10828
10741
-
Ser
GGA
[ENA]
¡û
>W1911533968
OLKH01000051
Bacteroidota
Flavobacterium columnare [OLKH]
43651
43738
+
Ser
GGA
[ENA]
¡û
>W1911564350
PCMX01000113
Bacteroidota
Flavobacterium columnare NBRC 100251 = ATCC 23463 [PCMX]
21195
21282
+
Ser
GGA
[ENA]
¡û
>W1810260940
PQNY01000016
Bacteroidota
Flavobacterium croceum DSM 17960 [PQNY]
38813
38900
+
Ser
GGA
[ENA]
¡û
>W1810355123
PVLU01000003
Bacteroidota
Flavobacterium columnare MS-FC-4 [PVLU]
305694
305781
+
Ser
GGA
[ENA]
¡û
>C121009088
CP003222
Bacteroidota
Flavobacterium columnare ATCC 49512 [CP003222]
1230379
1230468
+
Ser
GGA
[Ensembl]
¡û
>C121009111
CP003222
Bacteroidota
Flavobacterium columnare ATCC 49512 [CP003222]
3157721
3157632
-
Ser
GGA
[Ensembl]
¡û
>C161063758
CP013992
Bacteroidota
Flavobacterium covae 94-081 [CP013992]
343913
343824
-
Ser
GGA
[Ensembl]
¡û
>C161083170
CP015107
Bacteroidota
Flavobacterium covae C#2 [CP015107]
918345
918434
+
Ser
GGA
-
¡û
>C161095510
CP016277
Bacteroidota
Flavobacterium columnare Pf1 [CP016277]
2819028
2819117
+
Ser
GGA
-
¡û
>W1610535038
JRLW01000002
Bacteroidota
Flavobacterium suncheonense GH29-5 = DSM 17707 [JRLW]
158621
158710
+
Ser
GGA
[ENA]
¡û
>W1710540836
FNXE01000004
Bacteroidota
Paenimyroides aquimaris marinum [FNXE]
25200
25111
-
Ser
GGA
[ENA]
¡û
>W1710570702
FOVI01000001
Bacteroidota
Paenimyroides ummariense [FOVI]
288109
288020
-
Ser
GGA
[ENA]
¡û
>W1710584547
FQVQ01000001
Bacteroidota
Flavobacterium fontis [FQVQ]
362946
363035
+
Ser
GGA
[ENA]
¡û
>W1710588397
FQZI01000001
Bacteroidota
Flavobacterium terrae [FQZI]
717210
717299
+
Ser
GGA
[ENA]
¡û
>W1710637274
JRLW01000002
Bacteroidota
Flavobacterium suncheonense GH29-5 = DSM 17707 [JRLW]
158621
158710
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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