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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.239724 (40 seq.)
>W1710807305
LKCX01000012
Betaproteobacteria
Curvibacter sp. PAE-UM [LKCX]
50160
50084
-
Met
CAT
[ENA]
¡û
>W1711409727
MGPC01000014
Betaproteobacteria
Curvibacter sp. GWA2_64_110 [MGPC]
84726
84650
-
Met
CAT
[ENA]
¡û
>W1711503044
MKTG01000072
Betaproteobacteria
Burkholderiales bacterium 68-10 [MKTG]
116923
116847
-
Met
CAT
[ENA]
¡û
>W1711680531
MRWK01000286
Betaproteobacteria
Comamonadaceae bacterium BIN2 [MRWK]
8185
8261
+
Met
CAT
[ENA]
¡û
>W131066635
ANOY01000539
Betaproteobacteria
Pseudacidovorax intermedius NH-1 [ANOY]
2257
2333
+
Met
CAT
[ENA]
¡û
>C026311
CP000542
Betaproteobacteria
Verminephrobacter eiseniae EF01-2 [CP000542]
2609566
2609490
-
Met
CAT
[Ensembl]
¡û
>C171091622
CP019236
Betaproteobacteria
Rhodoferax koreense DCY-110 [CP019236]
513161
513237
+
Met
CAT
-
¡û
>WENV180284582
OBID01064454
[OBID] metagenome; sludge
662
586
-
fMet
CAT
[ENA]
¢þ
>WENV181169261
OEIV010000968
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
8264
8340
+
fMet
CAT
[ENA]
¢þ
>WENV181227214
OFDN01003393
[OFDN] hot springs metagenome; Water
851
927
+
fMet
CAT
[ENA]
¢þ
>WENV181311284
OFJB01000560
[OFJB] sludge metagenome; sludge
17737
17661
-
fMet
CAT
[ENA]
¢þ
>WENV181311334
OFJB01000863
[OFJB] sludge metagenome; sludge
1
77
+
fMet
CAT
[ENA]
¢þ
>WENV181312389
OFJB01103973
[OFJB] sludge metagenome; sludge
477
553
+
fMet
CAT
[ENA]
¢þ
>WENV181361135
OFNH01000307
[OFNH] sediment metagenome; Lake sediment
471
395
-
fMet
CAT
[ENA]
¢þ
>WENV181363120
OFOS01000033
[OFOS] sediment metagenome; Lake sediment
26433
26357
-
fMet
CAT
[ENA]
¢þ
>WENV181364544
OFOY01000016
[OFOY] sediment metagenome; Lake sediment
40804
40728
-
fMet
CAT
[ENA]
¢þ
>WENV181364648
OFPA01000023
[OFPA] sediment metagenome; Lake sediment
40807
40731
-
fMet
CAT
[ENA]
¢þ
>WENV181364826
OFPE01000296
[OFPE] sediment metagenome; Lake sediment
2006
1930
-
fMet
CAT
[ENA]
¢þ
>WENV181365326
OFPO01000063
[OFPO] sediment metagenome; Lake sediment
8970
8894
-
fMet
CAT
[ENA]
¢þ
>WENV181416079
OGCL01047542
[OGCL] hot springs metagenome; Hot spring water
1125
1049
-
fMet
CAT
[ENA]
¢þ
>W141425993
JEMG01000001
Betaproteobacteria
Hylemonella gracilis str. Niagara R [JEMG]
3709179
3709103
-
Met
CAT
[ENA]
¡û
>C181158408
CP027666
Betaproteobacteria
Ottowia oryzae KADR8-3 [CP027666]
1255440
1255516
+
Met
CAT
-
¡û
>C181158495
CP027667
Betaproteobacteria
Melaminivora suipulveris SC2-9 [CP027667]
1482826
1482750
-
Met
CAT
-
¡û
>C181160003
CP027792
Betaproteobacteria
Pulveribacter suum SC2-7 [CP027792]
100729
100653
-
Met
CAT
-
¡û
>W1911244730
NSJB01000003
Betaproteobacteria
Vandammella animalimorsus NML00-0135 [NSJB]
89085
89009
-
Met
CAT
[ENA]
¡û
>W1911244765
NSJC01000002
Betaproteobacteria
Vandammella animalimorsus NML97-0112 [NSJC]
8984
8908
-
Met
CAT
[ENA]
¡û
>W1911244830
NSJD01000019
Betaproteobacteria
Vandammella animalimorsus NML79-0751 [NSJD]
28856
28932
+
Met
CAT
[ENA]
¡û
>W1911244885
NSJE01000023
Betaproteobacteria
Vandammella animalimorsus NML120219 [NSJE]
40159
40083
-
Met
CAT
[ENA]
¡û
>W1911270470
NTBH01000004
Betaproteobacteria
Vandammella animalimorsus NML91-0036 [NTBH]
8983
8907
-
Met
CAT
[ENA]
¡û
>W1810486301
QAXU01000006
Betaproteobacteria
Acidovorax sp. CF301 [QAXU]
140864
140940
+
Met
CAT
[ENA]
¡û
>W1810763080
QQAV01000001
Betaproteobacteria
Pseudacidovorax intermedius DSM 21352 [QQAV]
225945
225869
-
Met
CAT
[ENA]
¡û
>W1511596020
LBNQ01000025
Betaproteobacteria
Lampropedia cohaerens CT6 [LBNQ]
50504
50428
-
Met
CAT
[ENA]
¡û
>W121108925
ALEE01000608
Betaproteobacteria
Melaminivora alkalimesophila CRZ1 [ALEE]
863
787
-
Met
CAT
[ENA]
¡û
>W1610074352
BCWP01000010
Betaproteobacteria
Curvibacter delicatus NBRC 14919 [BCWP]
4290
4214
-
Met
CAT
[ENA]
¡û
>W1610591942
LDSL01000060
Betaproteobacteria
Pseudacidovorax intermedius [LDSL]
5777
5701
-
Met
CAT
[ENA]
¡û
>W1610671409
LKCX01000012
Betaproteobacteria
Curvibacter sp. PAE-UM [LKCX]
50160
50084
-
Met
CAT
[ENA]
¡û
>W1710071470
BCWP01000010
Betaproteobacteria
Curvibacter delicatus NBRC 14919 [BCWP]
4290
4214
-
Met
CAT
[ENA]
¡û
>W1710512075
FMZC01000011
Betaproteobacteria
Paracidovorax valerianellae [FMZC]
67219
67295
+
Met
CAT
[ENA]
¡û
>W1710522987
FNHP01000004
Betaproteobacteria
Oryzisolibacter propanilivorax EPL6 [FNHP]
309882
309806
-
Met
CAT
[ENA]
¡û
>W1710711222
LDSL01000060
Betaproteobacteria
Pseudacidovorax intermedius [LDSL]
5777
5701
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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